Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7982616.1

Orthogroup ID

OG0008401

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 473

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7982616.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 472 bp

atgagagaggccttcgccgacagcagccggagcctgacgctgagggacacattgaagccggttctgataccctgctacgacctctccagtacggcgccgtttctgttctcccgggccgacgcgctcgagaccgagagctacgacttccgcctctgggaggtctgccgcgccacgtcagccgagccggggcttttcgagccggtccaaatgcggtccgtgaacagccagaccagttgcctggccgtggacggcggcctggccatgagcaacccgacagccgcggccatcacgcacgtgctgcacaacaagcaggagttcccgttcgtgcgaggggtggaggaccttttggtcctttccatcgggagcgggcagtttctagaagcgagccacgagtacgagcaggtcaagaggtggaaggccaaggagtgggcccgccccatggcccgcatctccggcgacggctccgctgacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009987 GO:0016020 GO:0016289 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019374 GO:0019637 GO:0043207 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0047617 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

157

Amino Acids

17.4

Weight (kDa)

5.22

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39220 AT3G54950
fragaria_vesca	FvH4_7g19660 FvH4_7g19660 FvH4_7g19660
malus_domestica	MD01G1108800.v1.1 MD07G1175100.v1.1
prunus_persica	Prupe.2G214300_v2.0.a1 Prupe.2G214300_v2.0.a1
pyrus_communis	pycom01g13590 pycom07g16950
rosa_chinensis	RchiOBHm_Chr1g0363481
rosa_laevigata	RLG00000027562
rosa_multiflora	Rmu_co7982616.1_g000001 Rmu_sc0008820.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293130
rosa_rugosa	Rorug01G0307300 Rorug01G0307400
rosa_samantha	Rh1AG316500 Rh1BG279800 Rh1CG295900 Rh1DG311100
rosa_wichuraiana	Rw1G028040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	426
AccBSI	CCGCTC	1 cut(s)	366
AccII	CGCG	3 cut(s)	122, 168, 281
AcoI	YGGCCR	3 cut(s)	240, 258, 282
AcvI	CACGTG	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	2 cut(s)	91, 395
AfiI	CCNNNNNNNGG	6 cut(s)	154, 157, 186, 244, 426, 439
AgsI	TTSAA	1 cut(s)	55
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	237, 255
AleI	CACNNNNGTG	1 cut(s)	293
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	1 cut(s)	138
AluI	AGCT	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	122
Ama87I	CYCGRG	2 cut(s)	111, 125
AoxI	GGCC	9 cut(s)	9, 114, 240, 253, 258, 282, 417, 429, 441
ApaI	GGGCCC	1 cut(s)	433
ApeKI	GCWGC	2 cut(s)	24, 298
AspLEI	GCGC	3 cut(s)	97, 124, 170
AspS9I	GGNCC	8 cut(s)	114, 202, 213, 340, 349, 429, 430, 442
AsuC2I	CCSGG	3 cut(s)	112, 113, 186
AvaI	CYCGRG	2 cut(s)	111, 125
AvaII	GGWCC	4 cut(s)	202, 213, 340, 349
BaeGI	GKGCMC	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	389
BbrPI	CACGTG	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	36, 285
BccI	CCATC	2 cut(s)	293, 365
BceAI	ACGGC	4 cut(s)	82, 108, 227, 265
BciT130I	CCWGG	2 cut(s)	239, 257
BcnI	CCSGG	3 cut(s)	112, 113, 186
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	377
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	6 cut(s)	25, 166, 253, 279, 282, 299
BlsI	GCNGC	6 cut(s)	26, 167, 254, 280, 283, 300
Bme1390I	CCNGG	5 cut(s)	112, 113, 186, 239, 257
Bme18I	GGWCC	4 cut(s)	202, 213, 340, 349
BmeT110I	CYCGRG	2 cut(s)	111, 125
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	8 cut(s)	114, 202, 213, 340, 349, 429, 430, 442
BmiI	GGNNCC	4 cut(s)	32, 96, 431, 463
BmrFI	CCNGG	5 cut(s)	112, 113, 186, 239, 257
BmsI	GCATC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	41
BpuMI	CCSGG	3 cut(s)	112, 113, 186
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	6 cut(s)	111, 185, 243, 279, 420, 438
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 305, 335
Bsc4I	CCNNNNNNNGG	6 cut(s)	154, 157, 186, 244, 426, 439
Bse118I	RCCGGY	2 cut(s)	58, 199
Bse1I	ACTGG	2 cut(s)	87, 231
BseBI	CCWGG	2 cut(s)	239, 257
BseDI	CCNNGG	6 cut(s)	111, 185, 243, 279, 420, 438
BseLI	CCNNNNNNNGG	6 cut(s)	154, 157, 186, 244, 426, 439
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	87, 231
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	36, 285
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	3 cut(s)	122, 168, 281
BshFI	GGCC	9 cut(s)	11, 116, 242, 255, 260, 284, 419, 431, 443
BshNI	GGYRCC	1 cut(s)	94
BsiHKCI	CYCGRG	2 cut(s)	111, 125
BsiSI	CCGG	6 cut(s)	28, 59, 112, 185, 200, 453
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	6 cut(s)	154, 157, 186, 244, 426, 439
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	9 cut(s)	11, 116, 242, 255, 260, 284, 419, 431, 443
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	2 cut(s)	111, 125
Bsp120I	GGGCCC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp19I	CCATGG	1 cut(s)	438
BspANI	GGCC	9 cut(s)	11, 116, 242, 255, 260, 284, 419, 431, 443
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	3 cut(s)	122, 168, 281
BspLI	GGNNCC	4 cut(s)	32, 96, 431, 463
BspMI	ACCTGC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	366
BsrFI	RCCGGY	2 cut(s)	58, 199
BsrI	ACTGG	2 cut(s)	87, 231
BssAI	RCCGGY	2 cut(s)	58, 199
BssECI	CCNNGG	6 cut(s)	111, 185, 243, 279, 420, 438
BssNI	GRCGYC	1 cut(s)	95
BssSI	CACGAG	1 cut(s)	389
BssT1I	CCWWGG	2 cut(s)	420, 438
Bst2BI	CACGAG	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	239, 257
BstACI	GRCGYC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	4 cut(s)	368, 385, 433, 445
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	3 cut(s)	243, 279, 438
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstFNI	CGCG	3 cut(s)	122, 168, 281
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	3 cut(s)	97, 124, 170
BstMAI	GTCTC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 176, 196, 298, 307, 453
BstNI	CCWGG	2 cut(s)	239, 257
BstSCI	CCNGG	5 cut(s)	110, 111, 184, 237, 255
BstSLI	GKGCMC	1 cut(s)	433
BstUI	CGCG	3 cut(s)	122, 168, 281
BstV1I	GCAGC	2 cut(s)	36, 285
BstXI	CCANNNNNNTGG	1 cut(s)	238
BsuRI	GGCC	9 cut(s)	11, 116, 242, 255, 260, 284, 419, 431, 443
BtgI	CCRYGG	3 cut(s)	243, 279, 438
BtrI	CACGTC	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	4 cut(s)	368, 385, 433, 445
CfoI	GCGC	3 cut(s)	97, 124, 170
Cfr10I	RCCGGY	2 cut(s)	58, 199
Cfr13I	GGNCC	8 cut(s)	114, 202, 213, 340, 349, 429, 430, 442
Cfr42I	CCGCGG	1 cut(s)	282
Cfr9I	CCCGGG	1 cut(s)	111
CpoI	CGGWCCG	1 cut(s)	213
CseI	GACGC	2 cut(s)	46, 128
Csp6I	GTAC	2 cut(s)	90, 394
CspI	CGGWCCG	1 cut(s)	213
CviAII	CATG	2 cut(s)	262, 439
CviQI	GTAC	2 cut(s)	90, 394
DdeI	CTNAG	1 cut(s)	41
DinI	GGCGCC	1 cut(s)	96
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	3 cut(s)	240, 258, 282
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	420, 438
Eco147I	AGGCCT	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	4 cut(s)	202, 213, 340, 349
Eco72I	CACGTG	1 cut(s)	295
Eco88I	CYCGRG	2 cut(s)	111, 125
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	237, 255
EcoT14I	CCWWGG	2 cut(s)	420, 438
EcoT38I	GRGCYC	1 cut(s)	433
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	420, 438
FaeI	CATG	2 cut(s)	265, 442
FaiI	YATR	2 cut(s)	263, 440
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	261, 438
FauI	CCCGC	3 cut(s)	359, 440, 452
Fnu4HI	GCNGC	6 cut(s)	25, 166, 253, 279, 282, 299
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	6 cut(s)	25, 166, 253, 279, 282, 299
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	3 cut(s)	96, 123, 169
GluI	GCNGC	6 cut(s)	25, 166, 253, 279, 282, 299
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	9 cut(s)	11, 116, 242, 255, 260, 284, 419, 431, 443
HapII	CCGG	6 cut(s)	28, 59, 112, 185, 200, 453
HgaI	GACGC	2 cut(s)	46, 128
HhaI	GCGC	3 cut(s)	97, 124, 170
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	265, 442
Hin6I	GCGC	3 cut(s)	95, 122, 168
HinP1I	GCGC	3 cut(s)	95, 122, 168
HpaII	CCGG	6 cut(s)	28, 59, 112, 185, 200, 453
Hpy166II	GTNNAC	2 cut(s)	220, 247
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	4 cut(s)	127, 361, 377, 406
Hpy8I	GTNNAC	2 cut(s)	220, 247
Hpy99I	CGWCG	2 cut(s)	122, 461
HpyAV	CCTTC	2 cut(s)	22, 409
HpyCH4IV	ACGT	2 cut(s)	173, 294
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 176, 196, 298, 307, 453
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	2 cut(s)	173, 294
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	265, 442
HspAI	GCGC	3 cut(s)	95, 122, 168
KasI	GGCGCC	1 cut(s)	94
KspI	CCGCGG	1 cut(s)	282
LmnI	GCTCC	3 cut(s)	30, 363, 467
Lsp1109I	GCAGC	2 cut(s)	36, 285
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	173, 294
MbiI	CCGCTC	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	433
MlsI	TGGCCA	1 cut(s)	260
MluNI	TGGCCA	1 cut(s)	260
Mly113I	GGCGCC	1 cut(s)	95
MnlI	CCTC	7 cut(s)	36, 92, 151, 161, 323, 331, 402
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	2 cut(s)	281, 467
MspI	CCGG	6 cut(s)	28, 59, 112, 185, 200, 453
MspR9I	CCNGG	5 cut(s)	112, 113, 186, 239, 257
MvaI	CCWGG	2 cut(s)	239, 257
MvnI	CGCG	3 cut(s)	122, 168, 281
MwoI	GCNNNNNNNGC	6 cut(s)	30, 176, 196, 298, 307, 453
NarI	GGCGCC	1 cut(s)	95
NciI	CCSGG	3 cut(s)	112, 113, 186
NcoI	CCATGG	1 cut(s)	438
NlaIII	CATG	2 cut(s)	265, 442
NlaIV	GGNNCC	4 cut(s)	32, 96, 431, 463
NmeAIII	GCCGAG	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	426
PkrI	GCNGC	6 cut(s)	26, 167, 254, 280, 283, 300
PluTI	GGCGCC	1 cut(s)	98
PmaCI	CACGTG	1 cut(s)	295
PmlI	CACGTG	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	237, 255
PspCI	CACGTG	1 cut(s)	295
PspGI	CCWGG	2 cut(s)	237, 255
PspN4I	GGNNCC	4 cut(s)	32, 96, 431, 463
PspOMI	GGGCCC	1 cut(s)	429
PspPI	GGNCC	8 cut(s)	114, 202, 213, 340, 349, 429, 430, 442
PspPPI	RGGWCCY	1 cut(s)	340
RsaI	GTAC	2 cut(s)	91, 395
RsaNI	GTAC	2 cut(s)	90, 394
RseI	CAYNNNNRTG	1 cut(s)	293
Rsr2I	CGGWCCG	1 cut(s)	213
RsrII	CGGWCCG	1 cut(s)	213
SacII	CCGCGG	1 cut(s)	282
SatI	GCNGC	6 cut(s)	25, 166, 253, 279, 282, 299
Sau96I	GGNCC	8 cut(s)	114, 202, 213, 340, 349, 429, 430, 442
ScrFI	CCNGG	5 cut(s)	112, 113, 186, 239, 257
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	8 cut(s)	84, 140, 162, 176, 297, 345, 405, 413
SfaNI	GCATC	1 cut(s)	456
SfoI	GGCGCC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	125
Sfr303I	CCGCGG	1 cut(s)	282
SgrBI	CCGCGG	1 cut(s)	282
SinI	GGWCC	4 cut(s)	202, 213, 340, 349
SlaI	CTCGAG	1 cut(s)	125
SmaI	CCCGGG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	11
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	377
StuI	AGGCCT	1 cut(s)	11
StyD4I	CCNGG	5 cut(s)	110, 111, 184, 237, 255
StyI	CCWWGG	2 cut(s)	420, 438
TaiI	ACGT	2 cut(s)	176, 297
TaqI	TCGA	2 cut(s)	126, 195
TaqII	GACCGA	1 cut(s)	146
TauI	GCSGC	4 cut(s)	168, 255, 281, 284
TseI	GCWGC	2 cut(s)	24, 298
TspGWI	ACGGA	1 cut(s)	205
TspMI	CCCGGG	1 cut(s)	111
Van91I	CCANNNNNTGG	1 cut(s)	426
VpaK11BI	GGWCC	4 cut(s)	202, 213, 340, 349
XagI	CCTNNNNNAGG	1 cut(s)	155
XbaI	TCTAGA	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	125
XmaI	CCCGGG	1 cut(s)	111
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.