Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008401

Physical Location & Seq

Genomic Coordinates Forward (+)

53778185 .. 53780978

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG311100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGATTCGACTCGGTCCGAAATGCAAGAGCCGAGTATTGATACGGATAAGCTGAGCTACGAGATATTCTCGATTCTGGAGAGTAAGTTTTTGTTTGGATATGACGATCAGAAGCTGTGGGTGCCGAAGCAGATCTCTCCGCCGGCGACGGAGCCGAAAGCCGAGGCCCACCCCGACCAGAATGCCGTGATCAAGAACCAGAGAGGCAAAATCTGCATACTCAGCCTCGACGGCGGAGGCATGCGCGGGATTCTCTCCGGCAAGGCCCTGGCGTATCTCGAGAACGCGCTCAAGCTGAAATCGGGGAACCCCGACGCCAGAATCGCCGATTACTTCGACGTCTCCGCCGGCGCCGGCGTCGGGGGCATTTTCACCGCCATGCTCTTCGCCACCAGGGACCAGAGCCGGCCGATATTCAAGGCCGACGACACGTGGCGGTTCCTCGTTGATCAGGGGAAGAGGTTTTACAACAACCGCTCGTCGTCGTCCTCCTCCTCCTCCTCCGGCGGGTTCCTGCGGTGGTTCATTCGCGGCGGGTCGGGTTCAGGCTCCGGCTCCGGCTCGACCACGTCGGCCACGGCCGGACTGGAGAAGGCGATGAGAGAGGCCTTCGCCGACAACAGCCGGAGCCTGACGCTGAGGGACACATTGAAGCCGGTTTTGATACCCTGCTACGACCTCTCCAGTACGGCGCCGTTTCTGTTCTCCCGGGCCGACGCGCTCGAGACCGAGAGCTACGACTTCCGCCTCTGGGAGGTCTGCCGCGCCACGTCAGCCGAGCCGGGGCTTTTCGAGCCGGTCCAAATGCGGTCCGTGAACAGCCAGACCAGTTGCCTGGCCGTGGACGGCGGCCTGGCCATGAGCAACCCGACCGCCGCGGCCATCACGCACGTGCTGCACAACAAGCAGGAGTTCCCGTTCGTGCGAGGGGTGGAGGACCTTTTGGTCCTTTCCATCGGGAGCGGGCAGTTTCTAGAAGCGAGCCACGAGTACGAGCAGGTCAAGAGGTGGAAGGCCAAGGAGTGGGCCCGCCCCATGGCCCGCATCTCCGGCGACGGCTCCGCTGACCTCGTTGACCAGTCCGTCGCCATGGCCTTCGGTCAGTCCGGCAGCACCAACTACGTCCGCATCCAGGCGAATGCGACAAGCTTGGGGAGGTGTGGTCCAAATGTAGATACAGACCCAAGTCCTAACAATGTCAAGATGCTGGTGGGATTAGCAGAGGATATGCTGAAGCAGAAGAATGTTGAATCGGTTCTGTTTGGCGGCAAGAGGATCGGCGAGCAGAGCAATTTCGAGAAGCTAGACTGGTTCGCCGGAGAACTTGTGCTGGAACATCAGAGGAGGAGTTGCAGAATAGCTCCCACTGTTGCCTTCAAGCAAGCTGCTCCTAAAGCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009987 GO:0016020 GO:0016289 GO:0016298 GO:0016787 GO:0016788 GO:0016790 GO:0019374 GO:0019637 GO:0043207 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0047617 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

467

Amino Acids

50.88

Weight (kDa)

6.57

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	74 - 295	1.7e-21	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39220 AT3G54950
fragaria_vesca	FvH4_7g19660 FvH4_7g19660 FvH4_7g19660
malus_domestica	MD01G1108800.v1.1 MD07G1175100.v1.1
prunus_persica	Prupe.2G214300_v2.0.a1 Prupe.2G214300_v2.0.a1
pyrus_communis	pycom01g13590 pycom07g16950
rosa_chinensis	RchiOBHm_Chr1g0363481
rosa_laevigata	RLG00000027562
rosa_multiflora	Rmu_co7982616.1_g000001 Rmu_sc0008820.1_g000004
rosa_roxburghii	Rroxscaffold_4G00293130
rosa_rugosa	Rorug01G0307300 Rorug01G0307400
rosa_samantha	Rh1AG316500 Rh1BG279800 Rh1CG295900 Rh1DG311100
rosa_wichuraiana	Rw1G028040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	944, 1082
AatII	GACGTC	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	988
AccB1I	GGYRCC	3 cut(s)	121, 350, 691
AccB7I	CCANNNNNTGG	1 cut(s)	1023
AccBSI	CCGCTC	2 cut(s)	477, 963
AccII	CGCG	6 cut(s)	246, 287, 531, 719, 765, 878
AclWI	GGATC	1 cut(s)	1283
AcoI	YGGCCR	6 cut(s)	407, 573, 579, 837, 855, 879
AcuI	CTGAAG	1 cut(s)	1253
AcvI	CACGTG	2 cut(s)	432, 892
AcyI	GRCGYC	5 cut(s)	315, 339, 351, 357, 692
AfaI	GTAC	2 cut(s)	688, 992
AfiI	CCNNNNNNNGG	9 cut(s)	360, 507, 751, 754, 783, 841, 1023, 1036, 1132
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	418, 652, 1250, 1378
AjiI	CACGTC	2 cut(s)	570, 771
AjnI	CCWGG	5 cut(s)	267, 392, 834, 852, 1131
AleI	CACNNNNGTG	1 cut(s)	890
AloI	GAACNNNNNNTCC	2 cut(s)	902, 934
AluBI	AGCT	9 cut(s)	52, 57, 115, 295, 735, 1149, 1303, 1361, 1385
AluI	AGCT	9 cut(s)	52, 57, 115, 295, 735, 1149, 1303, 1361, 1385
Alw26I	GTCTC	2 cut(s)	346, 719
AlwI	GGATC	1 cut(s)	1283
AlwNI	CAGNNNCTG	1 cut(s)	115
Ama87I	CYCGRG	3 cut(s)	278, 708, 722
ApaI	GGGCCC	1 cut(s)	1030
ApeKI	GCWGC	3 cut(s)	895, 1110, 1385
Asp700I	GAANNNNTTC	1 cut(s)	1254
AspLEI	GCGC	6 cut(s)	246, 289, 353, 694, 721, 767
AsuC2I	CCSGG	3 cut(s)	709, 710, 783
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	3 cut(s)	278, 708, 722
AvaII	GGWCC	7 cut(s)	15, 397, 799, 810, 937, 946, 1163
BaeGI	GKGCMC	1 cut(s)	1030
BalI	TGGCCA	1 cut(s)	857
BanI	GGYRCC	3 cut(s)	121, 350, 691
BanII	GRGCYC	1 cut(s)	1030
BarI	GAAGNNNNNNTAC	2 cut(s)	449, 481
BauI	CACGAG	1 cut(s)	986
BbrPI	CACGTG	2 cut(s)	432, 892
BbvCI	CCTCAGC	1 cut(s)	638
BbvI	GCAGC	3 cut(s)	882, 1122, 1372
BccI	CCATC	2 cut(s)	890, 962
BceAI	ACGGC	8 cut(s)	170, 247, 594, 679, 705, 824, 862, 1072
BcgI	CGANNNNNNTGC	4 cut(s)	164, 198, 1258, 1292
BciT130I	CCWGG	5 cut(s)	269, 394, 836, 854, 1133
BclI	TGATCA	2 cut(s)	189, 448
BcnI	CCSGG	3 cut(s)	709, 710, 783
BcoDI	GTCTC	2 cut(s)	346, 719
BfaI	CTAG	2 cut(s)	974, 1304
BfoI	RGCGCY	2 cut(s)	354, 695
BfuAI	ACCTGC	1 cut(s)	988
BglI	GCCNNNNNGGC	1 cut(s)	231
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	9 cut(s)	532, 763, 850, 876, 879, 896, 1111, 1267, 1386
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	9 cut(s)	533, 764, 851, 877, 880, 897, 1112, 1268, 1387
Bme1390I	CCNGG	8 cut(s)	269, 394, 709, 710, 783, 836, 854, 1133
Bme18I	GGWCC	7 cut(s)	15, 397, 799, 810, 937, 946, 1163
BmeT110I	CYCGRG	3 cut(s)	278, 708, 722
BmgBI	CACGTC	2 cut(s)	570, 771
BmrFI	CCNGG	8 cut(s)	269, 394, 709, 710, 783, 836, 854, 1133
BmsI	GCATC	3 cut(s)	1053, 1137, 1194
BoxI	GACNNNNGTC	1 cut(s)	1185
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	3 cut(s)	98, 608, 667
Bpu10I	CCTNAGC	1 cut(s)	638
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	3 cut(s)	709, 710, 783
BsaAI	YACGTR	2 cut(s)	432, 892
BsaHI	GRCGYC	5 cut(s)	315, 339, 351, 357, 692
BsaI	GGTCTC	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	9 cut(s)	360, 507, 751, 754, 783, 841, 1023, 1036, 1132
Bse118I	RCCGGY	6 cut(s)	142, 347, 353, 405, 655, 796
Bse1I	ACTGG	5 cut(s)	591, 684, 828, 1078, 1313
BseBI	CCWGG	5 cut(s)	269, 394, 836, 854, 1133
BseGI	GGATG	1 cut(s)	1128
BseLI	CCNNNNNNNGG	9 cut(s)	360, 507, 751, 754, 783, 841, 1023, 1036, 1132
BseMII	CTCAG	3 cut(s)	44, 235, 629
BseNI	ACTGG	5 cut(s)	591, 684, 828, 1078, 1313
BseRI	GAGGAG	6 cut(s)	481, 484, 487, 490, 1357, 1360
BseSI	GKGCMC	1 cut(s)	1030
BseX3I	CGGCCG	2 cut(s)	407, 579
BseXI	GCAGC	3 cut(s)	882, 1122, 1372
BsgI	GTGCAG	1 cut(s)	881
Bsh1236I	CGCG	6 cut(s)	246, 287, 531, 719, 765, 878
Bsh1285I	CGRYCG	3 cut(s)	410, 582, 873
BshNI	GGYRCC	3 cut(s)	121, 350, 691
BsiEI	CGRYCG	3 cut(s)	410, 582, 873
BsiHKCI	CYCGRG	3 cut(s)	278, 708, 722
BslFI	GGGAC	2 cut(s)	410, 656
BslI	CCNNNNNNNGG	9 cut(s)	360, 507, 751, 754, 783, 841, 1023, 1036, 1132
BsmAI	GTCTC	2 cut(s)	346, 719
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	2 cut(s)	410, 656
BsmI	GAATGC	2 cut(s)	187, 1144
Bso31I	GGTCTC	1 cut(s)	719
BsoBI	CYCGRG	3 cut(s)	278, 708, 722
Bsp120I	GGGCCC	1 cut(s)	1026
Bsp1286I	GDGCHC	1 cut(s)	1030
Bsp143I	GATC	5 cut(s)	106, 132, 189, 448, 1275
Bsp1720I	GCTNAGC	1 cut(s)	53
Bsp19I	CCATGG	2 cut(s)	1035, 1089
BspCNI	CTCAG	3 cut(s)	45, 234, 630
BspFNI	CGCG	6 cut(s)	246, 287, 531, 719, 765, 878
BspMI	ACCTGC	1 cut(s)	988
BspPI	GGATC	1 cut(s)	1283
BspQI	GCTCTTC	1 cut(s)	389
BspT107I	GGYRCC	3 cut(s)	121, 350, 691
BspTNI	GGTCTC	1 cut(s)	719
BsrBI	CCGCTC	2 cut(s)	477, 963
BsrFI	RCCGGY	6 cut(s)	142, 347, 353, 405, 655, 796
BsrI	ACTGG	5 cut(s)	591, 684, 828, 1078, 1313
BssAI	RCCGGY	6 cut(s)	142, 347, 353, 405, 655, 796
BssMI	GATC	5 cut(s)	106, 132, 189, 448, 1275
BssNI	GRCGYC	5 cut(s)	315, 339, 351, 357, 692
BssSI	CACGAG	1 cut(s)	986
BssT1I	CCWWGG	3 cut(s)	1017, 1035, 1089
Bst2BI	CACGAG	1 cut(s)	986
Bst2UI	CCWGG	5 cut(s)	269, 394, 836, 854, 1133
Bst4CI	ACNGT	1 cut(s)	1369
Bst6I	CTCTTC	2 cut(s)	389, 452
BstACI	GRCGYC	5 cut(s)	315, 339, 351, 357, 692
BstAPI	GCANNNNNTGC	2 cut(s)	213, 895
BstBAI	YACGTR	2 cut(s)	432, 892
BstDEI	CTNAG	3 cut(s)	53, 221, 638
BstDSI	CCRYGG	5 cut(s)	576, 840, 876, 1035, 1089
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstF5I	GGATG	1 cut(s)	1128
BstFNI	CGCG	6 cut(s)	246, 287, 531, 719, 765, 878
BstH2I	RGCGCY	2 cut(s)	354, 695
BstHHI	GCGC	6 cut(s)	246, 289, 353, 694, 721, 767
BstKTI	GATC	5 cut(s)	109, 135, 192, 451, 1278
BstMAI	GTCTC	2 cut(s)	346, 719
BstMBI	GATC	5 cut(s)	106, 132, 189, 448, 1275
BstMCI	CGRYCG	3 cut(s)	410, 582, 873
BstNI	CCWGG	5 cut(s)	269, 394, 836, 854, 1133
BstNSI	RCATGY	1 cut(s)	244
BstPAI	GACNNNNGTC	1 cut(s)	1185
BstSCI	CCNGG	8 cut(s)	267, 392, 707, 708, 781, 834, 852, 1131
BstSLI	GKGCMC	1 cut(s)	1030
BstUI	CGCG	6 cut(s)	246, 287, 531, 719, 765, 878
BstV1I	GCAGC	3 cut(s)	882, 1122, 1372
BstX2I	RGATCY	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	132
BstZI	CGGCCG	2 cut(s)	407, 579
BtgI	CCRYGG	5 cut(s)	576, 840, 876, 1035, 1089
BtgZI	GCGATG	1 cut(s)	611
BtrI	CACGTC	2 cut(s)	570, 771
BtsCI	GGATG	1 cut(s)	1128
BtsIMutI	CAGTG	1 cut(s)	1365
BveI	ACCTGC	1 cut(s)	988
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	6 cut(s)	246, 289, 353, 694, 721, 767
Cfr10I	RCCGGY	6 cut(s)	142, 347, 353, 405, 655, 796
Cfr42I	CCGCGG	1 cut(s)	879
Cfr9I	CCCGGG	1 cut(s)	708
CpoI	CGGWCCG	2 cut(s)	15, 810
CseI	GACGC	4 cut(s)	323, 346, 643, 725
Csp6I	GTAC	2 cut(s)	687, 991
CspI	CGGWCCG	2 cut(s)	15, 810
CviAII	CATG	5 cut(s)	241, 379, 859, 1036, 1090
CviQI	GTAC	2 cut(s)	687, 991
DdeI	CTNAG	3 cut(s)	53, 221, 638
DinI	GGCGCC	2 cut(s)	352, 693
DpnI	GATC	5 cut(s)	108, 134, 191, 450, 1277
DpnII	GATC	5 cut(s)	106, 132, 189, 448, 1275
DrdI	GACNNNNNNGTC	2 cut(s)	944, 1082
DseDI	GACNNNNNNGTC	2 cut(s)	944, 1082
EaeI	YGGCCR	6 cut(s)	407, 573, 579, 837, 855, 879
EagI	CGGCCG	2 cut(s)	407, 579
Eam1104I	CTCTTC	2 cut(s)	389, 452
EarI	CTCTTC	2 cut(s)	389, 452
EciI	GGCGGA	4 cut(s)	129, 249, 334, 734
EclXI	CGGCCG	2 cut(s)	407, 579
Eco130I	CCWWGG	3 cut(s)	1017, 1035, 1089
Eco147I	AGGCCT	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	1030
Eco31I	GGTCTC	1 cut(s)	719
Eco47I	GGWCC	7 cut(s)	15, 397, 799, 810, 937, 946, 1163
Eco52I	CGGCCG	2 cut(s)	407, 579
Eco57I	CTGAAG	1 cut(s)	1253
Eco72I	CACGTG	2 cut(s)	432, 892
Eco88I	CYCGRG	3 cut(s)	278, 708, 722
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoO109I	RGGNCCY	2 cut(s)	265, 937
EcoRII	CCWGG	5 cut(s)	267, 392, 834, 852, 1131
EcoT14I	CCWWGG	3 cut(s)	1017, 1035, 1089
EcoT38I	GRGCYC	1 cut(s)	1030
EgeI	GGCGCC	2 cut(s)	352, 693
EheI	GGCGCC	2 cut(s)	352, 693
ErhI	CCWWGG	3 cut(s)	1017, 1035, 1089
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	5 cut(s)	244, 382, 862, 1039, 1093
FaiI	YATR	8 cut(s)	102, 218, 242, 380, 860, 1037, 1091, 1229
FaqI	GGGAC	2 cut(s)	410, 656
FatI	CATG	5 cut(s)	240, 378, 858, 1035, 1089
FauI	CCCGC	6 cut(s)	239, 500, 527, 956, 1037, 1049
FbaI	TGATCA	2 cut(s)	189, 448
Fnu4HI	GCNGC	9 cut(s)	532, 763, 850, 876, 879, 896, 1111, 1267, 1386
FokI	GGATG	1 cut(s)	1115
FriOI	GRGCYC	1 cut(s)	1030
Fsp4HI	GCNGC	9 cut(s)	532, 763, 850, 876, 879, 896, 1111, 1267, 1386
FspBI	CTAG	2 cut(s)	974, 1304
GlaI	GCGC	6 cut(s)	245, 288, 352, 693, 720, 766
GluI	GCNGC	9 cut(s)	532, 763, 850, 876, 879, 896, 1111, 1267, 1386
GsuI	CTGGAG	3 cut(s)	98, 608, 667
HaeII	RGCGCY	2 cut(s)	354, 695
HgaI	GACGC	4 cut(s)	323, 346, 643, 725
HhaI	GCGC	6 cut(s)	246, 289, 353, 694, 721, 767
Hin1I	GRCGYC	5 cut(s)	315, 339, 351, 357, 692
Hin1II	CATG	5 cut(s)	244, 382, 862, 1039, 1093
Hin6I	GCGC	6 cut(s)	244, 287, 351, 692, 719, 765
HinP1I	GCGC	6 cut(s)	244, 287, 351, 692, 719, 765
HincII	GTYRAC	1 cut(s)	1075
HindII	GTYRAC	1 cut(s)	1075
HindIII	AAGCTT	1 cut(s)	1147
HinfI	GANTC	6 cut(s)	5, 10, 73, 250, 321, 1250
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	3 cut(s)	817, 844, 1075
Hpy188I	TCNGA	3 cut(s)	19, 111, 1341
Hpy8I	GTNNAC	3 cut(s)	817, 844, 1075
HpyAV	CCTTC	5 cut(s)	586, 619, 1006, 1105, 1384
HpyCH4III	ACNGT	1 cut(s)	1369
HpyCH4IV	ACGT	6 cut(s)	339, 431, 569, 770, 891, 1122
HpyCH4V	TGCA	4 cut(s)	25, 216, 898, 1353
HpyF3I	CTNAG	3 cut(s)	53, 221, 638
HpySE526I	ACGT	6 cut(s)	339, 431, 569, 770, 891, 1122
Hsp92I	GRCGYC	5 cut(s)	315, 339, 351, 357, 692
Hsp92II	CATG	5 cut(s)	244, 382, 862, 1039, 1093
HspAI	GCGC	6 cut(s)	244, 287, 351, 692, 719, 765
KasI	GGCGCC	2 cut(s)	350, 691
KroI	GCCGGC	4 cut(s)	142, 347, 353, 405
KroNI	GCCGGC	4 cut(s)	144, 349, 355, 407
Ksp22I	TGATCA	2 cut(s)	189, 448
KspI	CCGCGG	1 cut(s)	879
Kzo9I	GATC	5 cut(s)	106, 132, 189, 448, 1275
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	8 cut(s)	151, 554, 560, 627, 960, 1064, 1366, 1393
Lsp1109I	GCAGC	3 cut(s)	882, 1122, 1372
LweI	GCATC	3 cut(s)	1053, 1137, 1194
MaeI	CTAG	2 cut(s)	974, 1304
MaeII	ACGT	6 cut(s)	339, 431, 569, 770, 891, 1122
MalI	GATC	5 cut(s)	108, 134, 191, 450, 1277
MbiI	CCGCTC	2 cut(s)	477, 963
MboI	GATC	5 cut(s)	106, 132, 189, 448, 1275
MboII	GAAGA	3 cut(s)	376, 469, 1252
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	1030
MlsI	TGGCCA	1 cut(s)	857
MluCI	AATT	1 cut(s)	1291
MluNI	TGGCCA	1 cut(s)	857
Mly113I	GGCGCC	2 cut(s)	351, 692
MlyI	GAGTC	1 cut(s)	4
Mox20I	TGGCCA	1 cut(s)	857
MreI	CGCCGGCG	3 cut(s)	142, 347, 353
MroNI	GCCGGC	4 cut(s)	142, 347, 353, 405
MroXI	GAANNNNTTC	1 cut(s)	1254
MscI	TGGCCA	1 cut(s)	857
MseI	TTAA	1 cut(s)	1402
MslI	CAYNNNNRTG	2 cut(s)	377, 890
Msp20I	TGGCCA	1 cut(s)	857
MspA1I	CMGCKG	2 cut(s)	878, 1064
MspR9I	CCNGG	8 cut(s)	269, 394, 709, 710, 783, 836, 854, 1133
Mva1269I	GAATGC	2 cut(s)	187, 1144
MvaI	CCWGG	5 cut(s)	269, 394, 836, 854, 1133
MvnI	CGCG	6 cut(s)	246, 287, 531, 719, 765, 878
NaeI	GCCGGC	4 cut(s)	144, 349, 355, 407
NarI	GGCGCC	2 cut(s)	351, 692
NciI	CCSGG	3 cut(s)	709, 710, 783
NcoI	CCATGG	2 cut(s)	1035, 1089
NdeII	GATC	5 cut(s)	106, 132, 189, 448, 1275
NgoMIV	GCCGGC	4 cut(s)	142, 347, 353, 405
NlaIII	CATG	5 cut(s)	244, 382, 862, 1039, 1093
NmeAIII	GCCGAG	3 cut(s)	57, 187, 802
NspI	RCATGY	1 cut(s)	244
OliI	CACNNNNGTG	1 cut(s)	890
PaeI	GCATGC	1 cut(s)	244
PaeR7I	CTCGAG	2 cut(s)	278, 722
PceI	AGGCCT	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	389
PctI	GAATGC	2 cut(s)	187, 1144
PdiI	GCCGGC	4 cut(s)	144, 349, 355, 407
PdmI	GAANNNNTTC	1 cut(s)	1254
PfeI	GAWTC	5 cut(s)	5, 73, 250, 321, 1250
PflFI	GACNNNGTC	2 cut(s)	13, 568
PflMI	CCANNNNNTGG	1 cut(s)	1023
PkrI	GCNGC	9 cut(s)	533, 764, 851, 877, 880, 897, 1112, 1268, 1387
PleI	GAGTC	1 cut(s)	4
PluTI	GGCGCC	2 cut(s)	354, 695
PmaCI	CACGTG	2 cut(s)	432, 892
PmlI	CACGTG	2 cut(s)	432, 892
PpsI	GAGTC	1 cut(s)	4
Ppu21I	YACGTR	2 cut(s)	432, 892
PpuMI	RGGWCCY	1 cut(s)	937
PshAI	GACNNNNGTC	1 cut(s)	1185
Psp5II	RGGWCCY	1 cut(s)	937
Psp6I	CCWGG	5 cut(s)	267, 392, 834, 852, 1131
PspCI	CACGTG	2 cut(s)	432, 892
PspGI	CCWGG	5 cut(s)	267, 392, 834, 852, 1131
PspOMI	GGGCCC	1 cut(s)	1026
PspPPI	RGGWCCY	1 cut(s)	937
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	132
PsyI	GACNNNGTC	2 cut(s)	13, 568
RsaI	GTAC	2 cut(s)	688, 992
RsaNI	GTAC	2 cut(s)	687, 991
RseI	CAYNNNNRTG	2 cut(s)	377, 890
Rsr2I	CGGWCCG	2 cut(s)	15, 810
RsrII	CGGWCCG	2 cut(s)	15, 810
SacII	CCGCGG	1 cut(s)	879
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	1402
SatI	GCNGC	9 cut(s)	532, 763, 850, 876, 879, 896, 1111, 1267, 1386
Sau3AI	GATC	5 cut(s)	106, 132, 189, 448, 1275
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	8 cut(s)	269, 394, 709, 710, 783, 836, 854, 1133
SduI	GDGCHC	1 cut(s)	1030
SfaNI	GCATC	3 cut(s)	1053, 1137, 1194
SfoI	GGCGCC	2 cut(s)	352, 693
Sfr274I	CTCGAG	2 cut(s)	278, 722
Sfr303I	CCGCGG	1 cut(s)	879
SgrAI	CRCCGGYG	3 cut(s)	142, 347, 353
SgrBI	CCGCGG	1 cut(s)	879
SinI	GGWCC	7 cut(s)	15, 397, 799, 810, 937, 946, 1163
SlaI	CTCGAG	2 cut(s)	278, 722
SmaI	CCCGGG	1 cut(s)	710
SmiMI	CAYNNNNRTG	2 cut(s)	377, 890
SmlI	CTYRAG	3 cut(s)	278, 290, 722
SmoI	CTYRAG	3 cut(s)	278, 290, 722
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	1291
SseBI	AGGCCT	1 cut(s)	608
SspDI	GGCGCC	2 cut(s)	350, 691
SspMI	CTAG	2 cut(s)	974, 1304
StuI	AGGCCT	1 cut(s)	608
StyD4I	CCNGG	8 cut(s)	267, 392, 707, 708, 781, 834, 852, 1131
StyI	CCWWGG	3 cut(s)	1017, 1035, 1089
TaaI	ACNGT	1 cut(s)	1369
TaiI	ACGT	6 cut(s)	342, 434, 572, 773, 894, 1125
TaqI	TCGA	9 cut(s)	8, 71, 228, 279, 336, 563, 723, 792, 1296
TaqII	GACCGA	2 cut(s)	743, 1088
TasI	AATT	1 cut(s)	1291
TauI	GCSGC	6 cut(s)	534, 765, 852, 878, 881, 1269
TfiI	GAWTC	5 cut(s)	5, 73, 250, 321, 1250
Tru1I	TTAA	1 cut(s)	1402
Tru9I	TTAA	1 cut(s)	1402
TscAI	CASTG	1 cut(s)	1372
TseI	GCWGC	3 cut(s)	895, 1110, 1385
TspDTI	ATGAA	1 cut(s)	514
TspGWI	ACGGA	4 cut(s)	59, 164, 802, 1072
TspMI	CCCGGG	1 cut(s)	708
TspRI	CASTG	1 cut(s)	1372
Tth111I	GACNNNGTC	2 cut(s)	13, 568
Van91I	CCANNNNNTGG	1 cut(s)	1023
VpaK11BI	GGWCC	7 cut(s)	15, 397, 799, 810, 937, 946, 1163
XagI	CCTNNNNNAGG	1 cut(s)	752
XbaI	TCTAGA	1 cut(s)	973
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XhoI	CTCGAG	2 cut(s)	278, 722
XmaI	CCCGGG	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	1254
XspI	CTAG	2 cut(s)	974, 1304
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.