Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8034156.1

Orthogroup ID

OG0008691

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 529

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8034156.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgcagatagtagtcaatgctggtaatggatcaggaggcttcttcacatgggatgtgttagacaaactaggagcagacacatttgggtctctacacctcaaaccagatgggatgtttccaaaccacattcccaacccagaggacaaagtcgccatggcacttacaagggctgcagtgctagaaaactctgctgatcttggaattgtgttcgacactgatgtggaccgcagtggcgttgtagataacaaaggcaatcccattaatggggacaagcttattgctttgatttcagctattgtattgaaggaccaccctggaaccaccattgtgactgatgctcgaacaagtatggcacttacaagattcatcaccaacagaggaggtcaccattgtttatatcgcgttggttacaggaatgtgattgacaagggagtccagcttaataaggatggcattgaaactcatcttatgatggaaacttcaggacatggtgctcttaaagagaactttttccttgatgatggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005975 GO:0008150 GO:0008152 GO:0016853 GO:0016866 GO:0016868 GO:0044238 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

175

Amino Acids

18.88

Weight (kDa)

5.54

Isoelectric Point (pI)

2.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70820 AT1G70820
fragaria_vesca	FvH4_4g32820
malus_domestica	MD16G1023700.v1.1
prunus_persica	Prupe.1G329200_v2.0.a1 Prupe.1G329200_v2.0.a1 Prupe.1G329200_v2.0.a1 Prupe.1G329200_v2.0.a1
pyrus_communis	pycom16g02060
rosa_chinensis	RchiOBHm_Chr4g0441801
rosa_laevigata	RLG00000006065
rosa_multiflora	Rmu_co8034156.1_g000001 Rmu_co8340765.1_g000001 Rmu_sc0013960.1_g000003 Rmu_ssc0000486.1_g000028
rosa_roxburghii	Rroxscaffold_5G00382620
rosa_rugosa	Rorug04G0336300 Rorug04G0336400
rosa_samantha	Rh4AG387800 Rh4BG401500 Rh4CG416500 Rh4DG394800
rosa_wichuraiana	Rw4G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
AccII	CGCG	1 cut(s)	402
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	263, 264
AgsI	TTSAA	2 cut(s)	304, 458
AjnI	CCWGG	1 cut(s)	313
AleI	CACNNNNGTG	2 cut(s)	218, 326
AluBI	AGCT	3 cut(s)	274, 293, 439
AluI	AGCT	3 cut(s)	274, 293, 439
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	170
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	223, 307
AsuHPI	GGTGA	2 cut(s)	361, 377
AvaII	GGWCC	2 cut(s)	223, 307
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	4 cut(s)	101, 443, 466, 515
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	2 cut(s)	68, 179
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	2 cut(s)	223, 307
BmgT120I	GGNCC	2 cut(s)	223, 307
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	325
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	153, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 264
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	153, 313
BseGI	GGATG	3 cut(s)	58, 117, 454
BseLI	CCNNNNNNNGG	2 cut(s)	263, 264
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	263, 264
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	29, 193
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	319
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	153, 313
BssMI	GATC	2 cut(s)	29, 193
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	3 cut(s)	58, 117, 454
BstFNI	CGCG	1 cut(s)	402
BstKTI	GATC	2 cut(s)	32, 196
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	29, 193
BstNI	CCWGG	1 cut(s)	315
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	58, 117, 454
BtsI	GCAGTG	2 cut(s)	180, 235
BtsIMutI	CAGTG	3 cut(s)	180, 213, 235
Cfr13I	GGNCC	2 cut(s)	223, 307
CviAII	CATG	3 cut(s)	48, 154, 488
CviJI	RGCY	5 cut(s)	39, 170, 274, 293, 439
CviKI_1	RGCY	5 cut(s)	39, 170, 274, 293, 439
DpnI	GATC	2 cut(s)	31, 195
DpnII	GATC	2 cut(s)	29, 193
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	2 cut(s)	223, 307
Eco57I	CTGAAG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	383
EcoO65I	GGTNACC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	3 cut(s)	51, 157, 491
FaiI	YATR	6 cut(s)	49, 155, 350, 397, 470, 489
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	47, 153, 487
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	3 cut(s)	65, 124, 461
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	68, 179
GluI	GCNGC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	51, 157, 491
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	363, 432
HphI	GGTGA	2 cut(s)	361, 377
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	2 cut(s)	33, 483
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	4, 173
Hsp92II	CATG	3 cut(s)	51, 157, 491
Kzo9I	GATC	2 cut(s)	29, 193
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	9 cut(s)	6, 18, 117, 150, 300, 327, 397, 449, 468
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	2 cut(s)	68, 179
MaeIII	GTNAC	3 cut(s)	328, 383, 407
MalI	GATC	2 cut(s)	31, 195
MboI	GATC	2 cut(s)	29, 193
MboII	GAAGA	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	441
MnlI	CCTC	5 cut(s)	29, 107, 133, 371, 374
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	3 cut(s)	261, 441, 498
MslI	CAYNNNNRTG	2 cut(s)	218, 326
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	402
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	29, 193
NlaIII	CATG	3 cut(s)	51, 157, 491
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	328, 383
OliI	CACNNNNGTG	2 cut(s)	218, 326
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	1 cut(s)	363
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	313
PspEI	GGTNACC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	2 cut(s)	223, 307
PstI	CTGCAG	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	146
RseI	CAYNNNNRTG	2 cut(s)	218, 326
SaqAI	TTAA	3 cut(s)	261, 441, 498
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	29, 193
Sau96I	GGNCC	2 cut(s)	223, 307
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	5 cut(s)	99, 276, 295, 385, 441
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	2 cut(s)	223, 307
SmiMI	CAYNNNNRTG	2 cut(s)	218, 326
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	68, 179
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	153
TaqI	TCGA	2 cut(s)	210, 340
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	3 cut(s)	261, 441, 498
Tru9I	TTAA	3 cut(s)	261, 441, 498
TscAI	CASTG	3 cut(s)	180, 220, 235
TseFI	GTSAC	2 cut(s)	328, 383
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	2 cut(s)	328, 383
TspDTI	ATGAA	1 cut(s)	355
TspRI	CASTG	3 cut(s)	180, 220, 235
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	223, 307
VspI	ATTAAT	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	2 cut(s)	68, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.