Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8340765.1

Orthogroup ID

OG0008691

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 983

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8340765.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggcttccacttcaacttcttcaatatctttgcaaactagtgctcagaaaccaagcttcccctcaaattcagcagccacaacattccacacaaaccttactttttcttataatccattgccatttactaaatttttatgtgtaagatcttctagcacttccaagtactacaatgaagttgtggtggatgaagagatggacagaattcggaggctccaaaacggatcagatattcgtggggtggccttggaaggtgagaagggaaggtcagtcaacctaacgcctccggctgtggaggccattgcagaaagctttggtgagtgggttatcaatggcttggagaaggcgagaggacagcctgtggagaatgttaaggtgtcccttggcagagaccctagaatatcaggagcatctttgagtgtagctgtattttcaggtctagctcgtgccggttgtctggtgtttgatatgggacttgcaaccactcctgcttgcttcatgagtacaattttgcctccgttttcctatgacgcttcaatcatgatgacagcatctcacttgccctacactcgtaacggtctgaaattcttcaccaagagagggggattgacctcgccggaagtggaggaaatatgtgacagagctgccagaaagtatgctaataggcttgcgaaagtgtcaagcctgtttcgcgtaccgccatcaagagttgatttcatgagctcttactcggagcacctccgaaacattatcaaggagagagtcaaccatccactatattatgacactccactgaaaggatttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005975 GO:0008150 GO:0008152 GO:0016853 GO:0016866 GO:0016868 GO:0044238 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

269

Amino Acids

29.62

Weight (kDa)

9.28

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70820 AT1G70820
fragaria_vesca	FvH4_4g32820
malus_domestica	MD16G1023700.v1.1
prunus_persica	Prupe.1G329200_v2.0.a1 Prupe.1G329200_v2.0.a1 Prupe.1G329200_v2.0.a1 Prupe.1G329200_v2.0.a1
pyrus_communis	pycom16g02060
rosa_chinensis	RchiOBHm_Chr4g0441801
rosa_laevigata	RLG00000006065
rosa_multiflora	Rmu_co8034156.1_g000001 Rmu_co8340765.1_g000001 Rmu_sc0013960.1_g000003 Rmu_ssc0000486.1_g000028
rosa_roxburghii	Rroxscaffold_5G00382620
rosa_rugosa	Rorug04G0336300 Rorug04G0336400
rosa_samantha	Rh4AG387800 Rh4BG401500 Rh4CG416500 Rh4DG394800
rosa_wichuraiana	Rw4G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccII	CGCG	1 cut(s)	693
AciI	CCGC	1 cut(s)	698
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	4 cut(s)	67, 131, 204, 584
AfaI	GTAC	3 cut(s)	167, 505, 696
AfiI	CCNNNNNNNGG	2 cut(s)	600, 797
AgsI	TTSAA	3 cut(s)	15, 24, 537
AhlI	ACTAGT	1 cut(s)	38
AluBI	AGCT	6 cut(s)	57, 312, 425, 443, 644, 723
AluI	AGCT	6 cut(s)	57, 312, 425, 443, 644, 723
Alw21I	GWGCWC	3 cut(s)	46, 725, 738
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	2 cut(s)	243, 297
ApeKI	GCWGC	2 cut(s)	74, 644
ApoI	RAATTY	4 cut(s)	67, 131, 204, 584
Asp700I	GAANNNNTTC	1 cut(s)	587
AsuHPI	GGTGA	3 cut(s)	266, 329, 583
BanII	GRGCYC	1 cut(s)	725
BauI	CACGAG	1 cut(s)	444
Bbv12I	GWGCWC	3 cut(s)	46, 725, 738
BbvI	GCAGC	2 cut(s)	86, 631
BccI	CCATC	3 cut(s)	190, 709, 777
BcoDI	GTCTC	1 cut(s)	384
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	4 cut(s)	39, 153, 396, 440
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	2 cut(s)	75, 645
BlsI	GCNGC	2 cut(s)	76, 646
BmcAI	AGTACT	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	2 cut(s)	419, 560
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	246, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	600, 797
Bse118I	RCCGGY	1 cut(s)	449
Bse3DI	GCAATG	2 cut(s)	116, 300
BseDI	CCNNGG	2 cut(s)	246, 382
BseGI	GGATG	2 cut(s)	193, 769
BseLI	CCNNNNNNNGG	2 cut(s)	600, 797
BseMI	GCAATG	2 cut(s)	116, 300
BseMII	CTCAG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	86, 631
Bsh1236I	CGCG	1 cut(s)	693
BshFI	GGCC	2 cut(s)	245, 299
BsiHKAI	GWGCWC	3 cut(s)	46, 725, 738
BsiSI	CCGG	3 cut(s)	287, 450, 617
BslFI	GGGAC	2 cut(s)	364, 486
BslI	CCNNNNNNNGG	2 cut(s)	600, 797
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	2 cut(s)	364, 486
BsnI	GGCC	2 cut(s)	245, 299
Bso31I	GGTCTC	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	46, 725, 738
Bsp143I	GATC	2 cut(s)	146, 224
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	2 cut(s)	245, 299
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	693
BspHI	TCATGA	3 cut(s)	498, 540, 717
BspLI	GGNNCC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	384
BsrDI	GCAATG	2 cut(s)	116, 300
BsrFI	RCCGGY	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	246, 382
BssMI	GATC	2 cut(s)	146, 224
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	2 cut(s)	246, 382
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	578
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	493, 669
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	193, 769
BstFNI	CGCG	1 cut(s)	693
BstKTI	GATC	2 cut(s)	149, 227
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	2 cut(s)	146, 224
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 690
BstUI	CGCG	1 cut(s)	693
BstV1I	GCAGC	2 cut(s)	86, 631
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	245, 299
BtsCI	GGATG	2 cut(s)	193, 769
BtsIMutI	CAGTG	1 cut(s)	791
Cac8I	GCNNGC	2 cut(s)	493, 669
CciI	TCATGA	3 cut(s)	498, 540, 717
Cfr10I	RCCGGY	1 cut(s)	449
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	3 cut(s)	166, 504, 695
CviAII	CATG	3 cut(s)	499, 541, 718
CviQI	GTAC	3 cut(s)	166, 504, 695
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	2 cut(s)	148, 226
DpnII	GATC	2 cut(s)	146, 224
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	723
Eco130I	CCWWGG	2 cut(s)	246, 382
Eco24I	GRGCYC	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	723
EcoICRI	GAGCTC	1 cut(s)	723
EcoRI	GAATTC	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	246, 382
EcoT38I	GRGCYC	1 cut(s)	725
ErhI	CCWWGG	2 cut(s)	246, 382
FaeI	CATG	3 cut(s)	502, 544, 721
FaqI	GGGAC	2 cut(s)	364, 486
FatI	CATG	3 cut(s)	498, 540, 717
Fnu4HI	GCNGC	2 cut(s)	75, 645
FokI	GGATG	2 cut(s)	200, 756
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	2 cut(s)	75, 645
FspBI	CTAG	4 cut(s)	39, 153, 396, 440
GluI	GCNGC	2 cut(s)	75, 645
HaeIII	GGCC	2 cut(s)	245, 299
HapII	CCGG	3 cut(s)	287, 450, 617
HgaI	GACGC	1 cut(s)	539
Hin1II	CATG	3 cut(s)	502, 544, 721
HincII	GTYRAC	2 cut(s)	274, 766
HindII	GTYRAC	2 cut(s)	274, 766
HindIII	AAGCTT	2 cut(s)	55, 310
HinfI	GANTC	1 cut(s)	762
HpaII	CCGG	3 cut(s)	287, 450, 617
HphI	GGTGA	3 cut(s)	266, 329, 583
Hpy166II	GTNNAC	2 cut(s)	274, 766
Hpy188I	TCNGA	6 cut(s)	48, 210, 229, 582, 733, 743
Hpy188III	TCNNGA	5 cut(s)	405, 499, 541, 705, 718
Hpy8I	GTNNAC	2 cut(s)	274, 766
HpyAV	CCTTC	4 cut(s)	245, 253, 258, 337
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4V	TGCA	3 cut(s)	34, 305, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 690
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	502, 544, 721
Kzo9I	GATC	2 cut(s)	146, 224
LmnI	GCTCC	3 cut(s)	219, 407, 733
Lsp1109I	GCAGC	2 cut(s)	86, 631
LweI	GCATC	2 cut(s)	419, 560
MaeI	CTAG	4 cut(s)	39, 153, 396, 440
MaeIII	GTNAC	2 cut(s)	572, 635
MalI	GATC	2 cut(s)	148, 226
MboI	GATC	2 cut(s)	146, 224
MboII	GAAGA	4 cut(s)	12, 141, 203, 580
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	3 cut(s)	46, 725, 738
MluCI	AATT	5 cut(s)	67, 131, 204, 507, 584
MlyI	GAGTC	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	587
MseI	TTAA	1 cut(s)	372
MspI	CCGG	3 cut(s)	287, 450, 617
MvnI	CGCG	1 cut(s)	693
MwoI	GCNNNNNNNGC	2 cut(s)	296, 690
NdeII	GATC	2 cut(s)	146, 224
NlaIII	CATG	3 cut(s)	502, 544, 721
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	635
PagI	TCATGA	3 cut(s)	498, 540, 717
PdmI	GAANNNNTTC	1 cut(s)	587
PkrI	GCNGC	2 cut(s)	76, 646
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
PsiI	TTATAA	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	725
PspN4I	GGNNCC	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	3 cut(s)	167, 505, 696
RsaNI	GTAC	3 cut(s)	166, 504, 695
SacI	GAGCTC	1 cut(s)	725
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	75, 645
Sau3AI	GATC	2 cut(s)	146, 224
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	1 cut(s)	771
SduI	GDGCHC	3 cut(s)	46, 725, 738
SfaNI	GCATC	2 cut(s)	419, 560
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	5 cut(s)	67, 131, 204, 507, 584
SsiI	CCGC	1 cut(s)	698
SspMI	CTAG	4 cut(s)	39, 153, 396, 440
SstI	GAGCTC	1 cut(s)	725
StyI	CCWWGG	2 cut(s)	246, 382
TaaI	ACNGT	1 cut(s)	578
TasI	AATT	5 cut(s)	67, 131, 204, 507, 584
TatI	WGTACW	2 cut(s)	165, 503
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	2 cut(s)	74, 644
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	4 cut(s)	189, 204, 487, 706
TspGWI	ACGGA	2 cut(s)	237, 507
TspRI	CASTG	1 cut(s)	798
XapI	RAATTY	4 cut(s)	67, 131, 204, 584
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	4 cut(s)	39, 153, 396, 440
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.