Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008691

Physical Location & Seq

Genomic Coordinates Reverse (-)

61167532 .. 61170846

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG394800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGAGATTGAATGTTGTTGTATTGCAGATGACAGCATCTCACTTGCCCTACACTCGTAACGGTCTGAAATTCTTCACCAAGAGAGGGGGATTGACCTCGCCGGAAGTGGAGGAAATATGTGACAGAGCTGCCAGAAAGTATGCTAATAGGCTTGCGAAAGTGTCAAGCGTGCTTCGCGTACCACCATCAAGAGTTGATTTCATGAGCTCTTACTCGGAGCACCTCCGAAACATTATCAAGGAGAGAGTCAACCATCCACTATATTATGACACTCCACTGAAAGGATTTCAGATAGTAGTCAATGCTGGTAATGGATCAGGAGGCTTCTTCACATGGGATGTGTTAGACAAGCTAGGAGCAGACACATTTGGGTCTCTACACCTCAAACCAGATGGGATGTTTCCAAACCACATTCCCAACCCAGAGGACAAAGTCGCCATGGCACTTACAAGGGCTGCAGTGCTAGAAAACTCTGCTGATCTTGGAATTGTGTTCGACACTGATGTGGACCGCAGTGGCGTTGTAGATAACAAAGGCAATCCCATTAATGGGGACAAGCTTATTGCTTTGATTTCAGCTATTGTATTGAAGGAACACCCTGGAACCACCATTGTGACTGATGCTCGAACAAGTATGGCACTTACAAGATTCATCACCAACAGAGGAGGTCACCATTGTTTATATCGCGTTGGTTACAGGAATGTGATTGACAAGGGAGTCCAGCTTAATAAGGATGGCATTGAAACTCATCTTATGATGGAAACTTCAGGACATGGTGCTCTTAAAGAGAACTTTTTCCTTGATGATGGGGCTTACATGGTGGTGAAGATCATCATTGAGATGGTACGAATGAAGCTTGCTGGGTCAGATGAAGGTATTGGAAGTATCATTAACGATCTTGAAGAACCAAAAGATTCTGTAGAGCTAAGGATGAATGTAGTCTCTGACCCTAGATATGCAAAAGAAAAGGCAATCGAGGCAATTGAAACGTTTCGACAGTACGTGGAGGAGGGAAGAATTGAAGGATGGGAATTAGATACATGTGGAGATTGTTGGGTCAGCGAAGGCTGTCTAGCAGACATAAATGAAACCTCGGCTGCTGCAGTTGACGCTCACATGTATAGGGCAAAAGTATCAGATGAGGTGCATGGACAACATGGTTGGGTACACATTCGGCAGAGCATTCACAACCCGAATATTGCAGTGAACATGCAATCATCTGTGCTTGGCTGTTGCCAAATGATGACGATAGTTCTTCGAGATAAATTTCTCATAGCTAGTGAAATGGACAGAATCCTTGACATTACTGAGATTGACAAGTACGCCAAAAGTGCAATTGTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004615 GO:0005975 GO:0008150 GO:0008152 GO:0016853 GO:0016866 GO:0016868 GO:0044238 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

448

Amino Acids

49.74

Weight (kDa)

5.86

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGM_PMM_II	PF02879	71 - 179	1.1e-21	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PGM_PMM_III	PF02880	183 - 282	6.5e-11	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70820 AT1G70820
fragaria_vesca	FvH4_4g32820
malus_domestica	MD16G1023700.v1.1
prunus_persica	Prupe.1G329200_v2.0.a1 Prupe.1G329200_v2.0.a1 Prupe.1G329200_v2.0.a1 Prupe.1G329200_v2.0.a1
pyrus_communis	pycom16g02060
rosa_chinensis	RchiOBHm_Chr4g0441801
rosa_laevigata	RLG00000006065
rosa_multiflora	Rmu_co8034156.1_g000001 Rmu_co8340765.1_g000001 Rmu_sc0013960.1_g000003 Rmu_ssc0000486.1_g000028
rosa_roxburghii	Rroxscaffold_5G00382620
rosa_rugosa	Rorug04G0336300 Rorug04G0336400
rosa_samantha	Rh4AG387800 Rh4BG401500 Rh4CG416500 Rh4DG394800
rosa_wichuraiana	Rw4G033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	716
AccII	CGCG	2 cut(s)	177, 687
AciI	CCGC	1 cut(s)	511
AclI	AACGTT	1 cut(s)	989
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	68, 1265
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	5 cut(s)	180, 846, 1001, 1167, 1322
AfiI	CCNNNNNNNGG	4 cut(s)	84, 281, 548, 549
AflIII	ACRYGT	2 cut(s)	1040, 1116
AgsI	TTSAA	6 cut(s)	10, 589, 743, 902, 986, 1022
AjnI	CCWGG	1 cut(s)	598
AleI	CACNNNNGTG	2 cut(s)	503, 611
AluBI	AGCT	9 cut(s)	128, 207, 352, 559, 578, 724, 856, 925, 1277
AluI	AGCT	9 cut(s)	128, 207, 352, 559, 578, 724, 856, 925, 1277
Alw21I	GWGCWC	3 cut(s)	209, 222, 781
Alw26I	GTCTC	2 cut(s)	378, 946
AlwI	GGATC	1 cut(s)	322
ApeKI	GCWGC	4 cut(s)	128, 455, 1097, 1100
ApoI	RAATTY	2 cut(s)	68, 1265
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	3 cut(s)	71, 794, 990
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	4 cut(s)	67, 646, 662, 835
AvaII	GGWCC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	209
Bbv12I	GWGCWC	3 cut(s)	209, 222, 781
BbvI	GCAGC	4 cut(s)	115, 442, 1084, 1087
BccI	CCATC	8 cut(s)	193, 261, 386, 728, 751, 800, 835, 1020
BciT130I	CCWGG	1 cut(s)	600
BcoDI	GTCTC	2 cut(s)	378, 946
BfaI	CTAG	5 cut(s)	353, 464, 951, 1073, 1278
BfmI	CTRYAG	3 cut(s)	456, 918, 1101
BisI	GCNGC	4 cut(s)	129, 456, 1098, 1101
BlsI	GCNGC	4 cut(s)	130, 457, 1099, 1102
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	604
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	44, 610
Bpu10I	CCTNAGC	1 cut(s)	926
BsaAI	YACGTR	1 cut(s)	1003
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	438, 598, 1092
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 281, 548, 549
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	438, 598, 1092
BseGI	GGATG	6 cut(s)	253, 343, 402, 739, 936, 1031
BseLI	CCNNNNNNNGG	4 cut(s)	84, 281, 548, 549
BseMII	CTCAG	1 cut(s)	1299
BseRI	GAGGAG	2 cut(s)	678, 1022
BseXI	GCAGC	4 cut(s)	115, 442, 1084, 1087
BseYI	CCCAGC	1 cut(s)	860
Bsh1236I	CGCG	2 cut(s)	177, 687
BsiHKAI	GWGCWC	3 cut(s)	209, 222, 781
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	4 cut(s)	84, 281, 548, 549
BsmAI	GTCTC	2 cut(s)	378, 946
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	1182
Bso31I	GGTCTC	1 cut(s)	378
Bsp1286I	GDGCHC	3 cut(s)	209, 222, 781
Bsp143I	GATC	4 cut(s)	314, 478, 828, 895
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	1 cut(s)	511
BspCNI	CTCAG	1 cut(s)	1300
BspFNI	CGCG	2 cut(s)	177, 687
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	604
BspMAI	CTGCAG	2 cut(s)	460, 1105
BspPI	GGATC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	378
BssECI	CCNNGG	3 cut(s)	438, 598, 1092
BssMI	GATC	4 cut(s)	314, 478, 828, 895
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	2 cut(s)	62, 999
BstBAI	YACGTR	1 cut(s)	1003
BstC8I	GCNNGC	3 cut(s)	153, 170, 858
BstDEI	CTNAG	2 cut(s)	926, 1308
BstDSI	CCRYGG	1 cut(s)	438
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	6 cut(s)	253, 343, 402, 739, 936, 1031
BstFNI	CGCG	2 cut(s)	177, 687
BstKTI	GATC	4 cut(s)	317, 481, 831, 898
BstMAI	GTCTC	2 cut(s)	378, 946
BstMBI	GATC	4 cut(s)	314, 478, 828, 895
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 977, 1109, 1331
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	3 cut(s)	1044, 1120, 1213
BstPI	GGTNACC	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	3 cut(s)	456, 918, 1101
BstUI	CGCG	2 cut(s)	177, 687
BstV1I	GCAGC	4 cut(s)	115, 442, 1084, 1087
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	6 cut(s)	253, 343, 402, 739, 936, 1031
BtsI	GCAGTG	3 cut(s)	465, 520, 1209
BtsIMutI	CAGTG	5 cut(s)	275, 465, 498, 520, 1209
Cac8I	GCNNGC	3 cut(s)	153, 170, 858
CciI	TCATGA	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	1 cut(s)	1118
Csp6I	GTAC	5 cut(s)	179, 845, 1000, 1166, 1321
CviQI	GTAC	5 cut(s)	179, 845, 1000, 1166, 1321
DdeI	CTNAG	2 cut(s)	926, 1308
DpnI	GATC	4 cut(s)	316, 480, 830, 897
DpnII	GATC	4 cut(s)	314, 478, 828, 895
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	508
Eco53kI	GAGCTC	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	750
Eco91I	GGTNACC	1 cut(s)	668
EcoICRI	GAGCTC	1 cut(s)	207
EcoO65I	GGTNACC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	438
FaqI	GGGAC	1 cut(s)	566
Fnu4HI	GCNGC	4 cut(s)	129, 456, 1098, 1101
FokI	GGATG	6 cut(s)	240, 350, 409, 746, 943, 1038
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	4 cut(s)	129, 456, 1098, 1101
FspBI	CTAG	5 cut(s)	353, 464, 951, 1073, 1278
GluI	GCNGC	4 cut(s)	129, 456, 1098, 1101
GsaI	CCCAGC	1 cut(s)	864
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	1118
HincII	GTYRAC	2 cut(s)	250, 1108
HindII	GTYRAC	2 cut(s)	250, 1108
HindIII	AAGCTT	2 cut(s)	557, 854
HinfI	GANTC	5 cut(s)	246, 648, 717, 914, 1293
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	4 cut(s)	67, 646, 662, 835
Hpy166II	GTNNAC	5 cut(s)	250, 508, 1108, 1168, 1207
Hpy188I	TCNGA	7 cut(s)	66, 217, 227, 291, 868, 946, 1138
Hpy188III	TCNNGA	6 cut(s)	189, 202, 318, 768, 899, 1259
Hpy8I	GTNNAC	5 cut(s)	250, 508, 1108, 1168, 1207
HpyAV	CCTTC	4 cut(s)	583, 866, 1016, 1058
HpyCH4III	ACNGT	2 cut(s)	62, 999
HpyCH4IV	ACGT	2 cut(s)	989, 1002
HpyCH4V	TGCA	8 cut(s)	25, 458, 959, 1103, 1147, 1202, 1213, 1334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 977, 1109, 1331
HpyF3I	CTNAG	2 cut(s)	926, 1308
HpySE526I	ACGT	2 cut(s)	989, 1002
Kzo9I	GATC	4 cut(s)	314, 478, 828, 895
LmnI	GCTCC	2 cut(s)	217, 356
Lsp1109I	GCAGC	4 cut(s)	115, 442, 1084, 1087
LweI	GCATC	2 cut(s)	44, 610
MaeI	CTAG	5 cut(s)	353, 464, 951, 1073, 1278
MaeII	ACGT	2 cut(s)	989, 1002
MaeIII	GTNAC	5 cut(s)	56, 119, 613, 668, 692
MalI	GATC	4 cut(s)	316, 480, 830, 897
MboI	GATC	4 cut(s)	314, 478, 828, 895
MboII	GAAGA	6 cut(s)	64, 319, 838, 914, 1026, 1247
MfeI	CAATTG	2 cut(s)	981, 1335
MhlI	GDGCHC	3 cut(s)	209, 222, 781
MluCI	AATT	7 cut(s)	68, 486, 981, 1017, 1031, 1265, 1335
MlyI	GAGTC	2 cut(s)	255, 726
MroXI	GAANNNNTTC	3 cut(s)	71, 794, 990
MseI	TTAA	4 cut(s)	546, 726, 783, 891
MslI	CAYNNNNRTG	4 cut(s)	503, 611, 821, 839
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	600
MunI	CAATTG	2 cut(s)	981, 1335
Mva1269I	GAATGC	1 cut(s)	1182
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	2 cut(s)	177, 687
MwoI	GCNNNNNNNGC	4 cut(s)	174, 977, 1109, 1331
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	4 cut(s)	314, 478, 828, 895
NlaIV	GGNNCC	1 cut(s)	604
NmeAIII	GCCGAG	1 cut(s)	1073
NmuCI	GTSAC	3 cut(s)	119, 613, 668
NspI	RCATGY	3 cut(s)	1044, 1120, 1213
OliI	CACNNNNGTG	2 cut(s)	503, 611
PagI	TCATGA	1 cut(s)	201
PciI	ACATGT	2 cut(s)	1040, 1116
PctI	GAATGC	1 cut(s)	1182
PdmI	GAANNNNTTC	3 cut(s)	71, 794, 990
PfeI	GAWTC	3 cut(s)	648, 914, 1293
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	4 cut(s)	130, 457, 1099, 1102
PleI	GAGTC	2 cut(s)	254, 725
PpsI	GAGTC	2 cut(s)	254, 725
Ppu21I	YACGTR	1 cut(s)	1003
PscI	ACATGT	2 cut(s)	1040, 1116
PshBI	ATTAAT	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	209
Psp1406I	AACGTT	1 cut(s)	989
Psp6I	CCWGG	1 cut(s)	598
PspEI	GGTNACC	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	1 cut(s)	508
PstI	CTGCAG	2 cut(s)	460, 1105
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	5 cut(s)	180, 846, 1001, 1167, 1322
RsaNI	GTAC	5 cut(s)	179, 845, 1000, 1166, 1321
RseI	CAYNNNNRTG	4 cut(s)	503, 611, 821, 839
SacI	GAGCTC	1 cut(s)	209
SaqAI	TTAA	4 cut(s)	546, 726, 783, 891
SatI	GCNGC	4 cut(s)	129, 456, 1098, 1101
Sau3AI	GATC	4 cut(s)	314, 478, 828, 895
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	2 cut(s)	255, 726
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	3 cut(s)	209, 222, 781
SfaNI	GCATC	2 cut(s)	44, 610
SfcI	CTRYAG	3 cut(s)	456, 918, 1101
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	4 cut(s)	503, 611, 821, 839
Sse9I	AATT	7 cut(s)	68, 486, 981, 1017, 1031, 1265, 1335
SsiI	CCGC	1 cut(s)	511
SspI	AATATT	1 cut(s)	1198
SspMI	CTAG	5 cut(s)	353, 464, 951, 1073, 1278
SstI	GAGCTC	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	62, 999
TaiI	ACGT	2 cut(s)	992, 1005
TaqI	TCGA	5 cut(s)	495, 625, 975, 994, 1258
TasI	AATT	7 cut(s)	68, 486, 981, 1017, 1031, 1265, 1335
TfiI	GAWTC	3 cut(s)	648, 914, 1293
Tru1I	TTAA	4 cut(s)	546, 726, 783, 891
Tru9I	TTAA	4 cut(s)	546, 726, 783, 891
TscAI	CASTG	5 cut(s)	282, 465, 505, 520, 1209
TseFI	GTSAC	3 cut(s)	119, 613, 668
TseI	GCWGC	4 cut(s)	128, 455, 1097, 1100
Tsp45I	GTSAC	3 cut(s)	119, 613, 668
TspDTI	ATGAA	6 cut(s)	190, 640, 866, 885, 947, 1101
TspRI	CASTG	5 cut(s)	282, 465, 505, 520, 1209
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	508
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	68, 1265
XceI	RCATGY	3 cut(s)	1044, 1120, 1213
XmnI	GAANNNNTTC	3 cut(s)	71, 794, 990
XspI	CTAG	5 cut(s)	353, 464, 951, 1073, 1278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.