Rw4G033470

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
60656421 .. 60659043
2623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G033470.1

Sequence Viewer

Length: 1839 bp
ATGGCTTCCACTTCAACTTCTTCAATATCTTTGCAAACTAGTGCTCAGAAACCAAGCTTCCCCTCAAATCCAGCAGCCACAACATTCCACACAAACCTTACTTTTCCATATAATCCATTGCCATTTACTAAATTTTTATGTGTAAGATCTTCTAGCACTTCCAAGTACTACAATGAAGTTGTGGTGGATGAAGAGATGGACAGAATTCGGAGGCTCCAAAACGGATCAGATATTCGTGGGGTGGCCTTGGAAGGTGAGAAGGGAAGGTCAGTCGACCTAACGCCTCCGGCTGTGGAGGCCATTGCAGAAAGCTTTGGTGAGTGGGTTATCAATGGCTTGGAGAAGGCGAGAGGACAGCCTGTGGAGAATGTTAAGGTGTCCCTTGGCAGAGACCCTAGAATATCAGGAGTATCTTTGAGTGTAGCTGTATTTTCAGGTCTAGCTCGTGCCGGTTGTCTGGTGTTTGATATGGGACTTGCAACCACTCCTGCTTGCTTCATGAGTACAATTTTGCCTCCGTTTTCCTATGACGCTTCAATCATGATGACAGCATCTCACTTGCCCTACACTCGTAACGGTCTGAAATTCTTCACCAAGAGAGGGGGATTGACCTCGCCGGAAGTGGAGGAAATATGTGACAGAGCTGCCAGAAAGTATGCTAATAGGCTTGCGAAAGTGTCAAGCGTGTTTCGCGTACCACCATCAAGAGTTGATTTCATGAGCTCTTACTCGGAGCACCTCCGAAACATTATCAAGGAGAGAGTCAACCATCCACTATATTATGACACTCCACTGAAAGGATTTCAGGTATGGGATGTTTCCAAACCACATTCCCAACCCAGAGGACAAAGTCGCCATGGCACTTACAAGGGCTGCAGACCAGATGGGATGTTTCCAAACCACATTCCCAACCCAGAGGACAAAGTCGCCATGGCACTTACAAGGGCTGCAGTGCTAGAAAACTCTGCTGATCTTGGAATTGTGTTCGACACTGATGTGGACCGCAGTGGCGTTGTAGATAACAAAGGCAATCCCATTAATGGGGACAAGCTTATTGCTTTGATTTCAGCTATTGTATTGAAGGACCACCCTGGAACCACCATTGTGACTGATGCTCGAACAAGTATGGCACTTACAAGATTCATCACCAACAGAGGAGGTCACCATTGTTTATATCGCGTTGGTTACAGGAATGTGATTGACAAGGGAGTCCAGCTTAATAAGGATGGCATTGAAACTCATCTTATGATGGAAACTTCAGGACATGGTGCTCTTAAAGAGAACTTTTTCCTTGATGATGGGGCTTACATGGTGGTGAAGATCATCATTGAGATGGTACGAATGAAGCTTGCTGGGTCAGATGAAGTTATTGGAAGTATCATTAACGATCTTGAAGAACCAAAAGATTCTGTAGAGCTAAGGATGAATATAGTCTCTGACCCTAGATATGCAAAAGAAAAGGCAATCGAGGCAATTGAAACGTTTCGACAGTACGTGGAGGAGGGAAGAATTGAAGGATGGGAATTAGATACATGTGGAGATTGTTGGGTCAGCGAAGGCTGTCTAGCAGACACAAATGACACCTCGGCTGCTGCAGTTGACGCTCACATGTATAGGGCAAAAGTATCAGATGAGGTGCATGGACAACATGGTTGGGTACACATTCGGCAGAGCATTCACAACCCGAATATTGCAGTGAACATGCAATCATCTGTGCCTGGCTGTTGCCAAATGATGACGATAGTTCTTCGAGATAAATTTCTCATAGCTAGTGAAATGGACAGAATCCTTGACATTAATGAGATTGACAAGTACGCCAAAAGTGGAATTGTAGGCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

612

Amino Acids

67.61

Weight (kDa)

6.21

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGM_PMM_I PF02878 71 - 217 4.3e-23 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PGM_PMM_II PF02879 292 - 343 2.9e-12 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
PGM_PMM_III PF02880 347 - 447 1.6e-10 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1208
AccI GTMKAC 1 cut(s) 273
AccII CGCG 2 cut(s) 693, 1179
AciI CCGC 1 cut(s) 1003
AclI AACGTT 1 cut(s) 1481
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 4 cut(s) 131, 204, 584, 1757
AcuI CTGAAG 1 cut(s) 1242
AfaI GTAC 7 cut(s) 167, 505, 696, 1338, 1493, 1659, 1814
AfiI CCNNNNNNNGG 4 cut(s) 600, 797, 1040, 1041
AflIII ACRYGT 2 cut(s) 1532, 1608
AgsI TTSAA 8 cut(s) 15, 24, 537, 1081, 1235, 1394, 1478, 1514
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 2 cut(s) 1090, 1717
AleI CACNNNNGTG 2 cut(s) 995, 1103
Alw21I GWGCWC 4 cut(s) 46, 725, 738, 1273
Alw26I GTCTC 2 cut(s) 384, 1438
AlwI GGATC 1 cut(s) 232
AoxI GGCC 2 cut(s) 243, 297
ApeKI GCWGC 6 cut(s) 74, 644, 873, 947, 1589, 1592
ApoI RAATTY 4 cut(s) 131, 204, 584, 1757
AseI ATTAAT 2 cut(s) 1038, 1797
Asp700I GAANNNNTTC 3 cut(s) 587, 1286, 1482
AspS9I GGNCC 2 cut(s) 1000, 1084
AsuHPI GGTGA 6 cut(s) 266, 329, 583, 1138, 1154, 1327
AvaII GGWCC 2 cut(s) 1000, 1084
BanII GRGCYC 1 cut(s) 725
BauI CACGAG 1 cut(s) 444
Bbv12I GWGCWC 4 cut(s) 46, 725, 738, 1273
BbvI GCAGC 6 cut(s) 86, 631, 860, 934, 1576, 1579
BccI CCATC 9 cut(s) 190, 709, 777, 878, 1220, 1243, 1292, 1327, 1512
BciT130I CCWGG 2 cut(s) 1092, 1719
BcoDI GTCTC 2 cut(s) 384, 1438
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 8 cut(s) 39, 153, 396, 440, 956, 1443, 1565, 1770
BfmI CTRYAG 4 cut(s) 874, 948, 1410, 1593
BglII AGATCT 1 cut(s) 146
BisI GCNGC 6 cut(s) 75, 645, 874, 948, 1590, 1593
BlsI GCNGC 6 cut(s) 76, 646, 875, 949, 1591, 1594
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 2 cut(s) 1092, 1719
Bme18I GGWCC 2 cut(s) 1000, 1084
BmgT120I GGNCC 2 cut(s) 1000, 1084
BmiI GGNNCC 2 cut(s) 215, 1096
BmrFI CCNGG 2 cut(s) 1092, 1719
BmsI GCATC 2 cut(s) 560, 1102
Bpu10I CCTNAGC 1 cut(s) 1418
BsaAI YACGTR 1 cut(s) 1495
BsaI GGTCTC 1 cut(s) 384
BsaJI CCNNGG 6 cut(s) 246, 382, 856, 930, 1090, 1584
Bsc4I CCNNNNNNNGG 4 cut(s) 600, 797, 1040, 1041
Bse118I RCCGGY 1 cut(s) 449
Bse3DI GCAATG 2 cut(s) 116, 300
BseBI CCWGG 2 cut(s) 1092, 1719
BseDI CCNNGG 6 cut(s) 246, 382, 856, 930, 1090, 1584
BseGI GGATG 7 cut(s) 193, 769, 820, 894, 1231, 1428, 1523
BseLI CCNNNNNNNGG 4 cut(s) 600, 797, 1040, 1041
BseMI GCAATG 2 cut(s) 116, 300
BseMII CTCAG 1 cut(s) 59
BseRI GAGGAG 2 cut(s) 1170, 1514
BseXI GCAGC 6 cut(s) 86, 631, 860, 934, 1576, 1579
BseYI CCCAGC 1 cut(s) 1352
Bsh1236I CGCG 2 cut(s) 693, 1179
BshFI GGCC 2 cut(s) 245, 299
BsiHKAI GWGCWC 4 cut(s) 46, 725, 738, 1273
BsiSI CCGG 3 cut(s) 287, 450, 617
BslFI GGGAC 3 cut(s) 364, 486, 1058
BslI CCNNNNNNNGG 4 cut(s) 600, 797, 1040, 1041
BsmAI GTCTC 2 cut(s) 384, 1438
BsmFI GGGAC 3 cut(s) 364, 486, 1058
BsmI GAATGC 1 cut(s) 1674
BsnI GGCC 2 cut(s) 245, 299
Bso31I GGTCTC 1 cut(s) 384
Bsp1286I GDGCHC 4 cut(s) 46, 725, 738, 1273
Bsp143I GATC 5 cut(s) 146, 224, 970, 1320, 1387
Bsp19I CCATGG 2 cut(s) 856, 930
BspACI CCGC 1 cut(s) 1003
BspANI GGCC 2 cut(s) 245, 299
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 2 cut(s) 693, 1179
BspHI TCATGA 3 cut(s) 498, 540, 717
BspLI GGNNCC 2 cut(s) 215, 1096
BspMAI CTGCAG 3 cut(s) 878, 952, 1597
BspPI GGATC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 384
BsrDI GCAATG 2 cut(s) 116, 300
BsrFI RCCGGY 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 6 cut(s) 246, 382, 856, 930, 1090, 1584
BssMI GATC 5 cut(s) 146, 224, 970, 1320, 1387
BssSI CACGAG 1 cut(s) 444
BssT1I CCWWGG 4 cut(s) 246, 382, 856, 930
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 2 cut(s) 1092, 1719
Bst4CI ACNGT 2 cut(s) 578, 1491
Bst6I CTCTTC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 1495
BstC8I GCNNGC 3 cut(s) 493, 669, 1350
BstDEI CTNAG 2 cut(s) 45, 1418
BstDSI CCRYGG 2 cut(s) 856, 930
BstEII GGTNACC 1 cut(s) 1160
BstF5I GGATG 7 cut(s) 193, 769, 820, 894, 1231, 1428, 1523
BstFNI CGCG 2 cut(s) 693, 1179
BstKTI GATC 5 cut(s) 149, 227, 973, 1323, 1390
BstMAI GTCTC 2 cut(s) 384, 1438
BstMBI GATC 5 cut(s) 146, 224, 970, 1320, 1387
BstMWI GCNNNNNNNGC 4 cut(s) 296, 690, 1469, 1601
BstNI CCWGG 2 cut(s) 1092, 1719
BstNSI RCATGY 3 cut(s) 1536, 1612, 1705
BstPI GGTNACC 1 cut(s) 1160
BstSCI CCNGG 2 cut(s) 1090, 1717
BstSFI CTRYAG 4 cut(s) 874, 948, 1410, 1593
BstUI CGCG 2 cut(s) 693, 1179
BstV1I GCAGC 6 cut(s) 86, 631, 860, 934, 1576, 1579
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 2 cut(s) 245, 299
BtgI CCRYGG 2 cut(s) 856, 930
BtsCI GGATG 7 cut(s) 193, 769, 820, 894, 1231, 1428, 1523
BtsI GCAGTG 3 cut(s) 957, 1012, 1701
BtsIMutI CAGTG 5 cut(s) 791, 957, 990, 1012, 1701
Cac8I GCNNGC 3 cut(s) 493, 669, 1350
CciI TCATGA 3 cut(s) 498, 540, 717
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 1000, 1084
CseI GACGC 2 cut(s) 539, 1610
Csp6I GTAC 7 cut(s) 166, 504, 695, 1337, 1492, 1658, 1813
CviQI GTAC 7 cut(s) 166, 504, 695, 1337, 1492, 1658, 1813
DdeI CTNAG 2 cut(s) 45, 1418
DpnI GATC 5 cut(s) 148, 226, 972, 1322, 1389
DpnII GATC 5 cut(s) 146, 224, 970, 1320, 1387
DrdI GACNNNNNNGTC 1 cut(s) 1208
DseDI GACNNNNNNGTC 1 cut(s) 1208
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 723
Eco130I CCWWGG 4 cut(s) 246, 382, 856, 930
Eco24I GRGCYC 1 cut(s) 725
Eco31I GGTCTC 1 cut(s) 384
Eco47I GGWCC 2 cut(s) 1000, 1084
Eco53kI GAGCTC 1 cut(s) 723
Eco57I CTGAAG 1 cut(s) 1242
Eco91I GGTNACC 1 cut(s) 1160
EcoICRI GAGCTC 1 cut(s) 723
EcoO65I GGTNACC 1 cut(s) 1160
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 1090, 1717
EcoT14I CCWWGG 4 cut(s) 246, 382, 856, 930
EcoT38I GRGCYC 1 cut(s) 725
ErhI CCWWGG 4 cut(s) 246, 382, 856, 930
FaqI GGGAC 3 cut(s) 364, 486, 1058
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 6 cut(s) 75, 645, 874, 948, 1590, 1593
FokI GGATG 7 cut(s) 200, 756, 827, 901, 1238, 1435, 1530
FriOI GRGCYC 1 cut(s) 725
Fsp4HI GCNGC 6 cut(s) 75, 645, 874, 948, 1590, 1593
FspBI CTAG 8 cut(s) 39, 153, 396, 440, 956, 1443, 1565, 1770
GluI GCNGC 6 cut(s) 75, 645, 874, 948, 1590, 1593
GsaI CCCAGC 1 cut(s) 1356
HaeIII GGCC 2 cut(s) 245, 299
HapII CCGG 3 cut(s) 287, 450, 617
HgaI GACGC 2 cut(s) 539, 1610
HincII GTYRAC 3 cut(s) 274, 766, 1600
HindII GTYRAC 3 cut(s) 274, 766, 1600
HindIII AAGCTT 4 cut(s) 55, 310, 1049, 1346
HinfI GANTC 5 cut(s) 762, 1140, 1209, 1406, 1785
HpaII CCGG 3 cut(s) 287, 450, 617
HphI GGTGA 6 cut(s) 266, 329, 583, 1138, 1154, 1327
Hpy166II GTNNAC 6 cut(s) 274, 766, 1000, 1600, 1660, 1699
Hpy188I TCNGA 9 cut(s) 48, 210, 229, 582, 733, 743, 1360, 1438, 1630
Hpy188III TCNNGA 8 cut(s) 405, 499, 541, 705, 718, 1260, 1391, 1751
Hpy8I GTNNAC 6 cut(s) 274, 766, 1000, 1600, 1660, 1699
HpyAV CCTTC 7 cut(s) 245, 253, 258, 337, 1075, 1508, 1550
HpyCH4III ACNGT 2 cut(s) 578, 1491
HpyCH4IV ACGT 2 cut(s) 1481, 1494
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 690, 1469, 1601
HpyF3I CTNAG 2 cut(s) 45, 1418
HpySE526I ACGT 2 cut(s) 1481, 1494
Kzo9I GATC 5 cut(s) 146, 224, 970, 1320, 1387
LmnI GCTCC 2 cut(s) 219, 733
Lsp1109I GCAGC 6 cut(s) 86, 631, 860, 934, 1576, 1579
LweI GCATC 2 cut(s) 560, 1102
MaeI CTAG 8 cut(s) 39, 153, 396, 440, 956, 1443, 1565, 1770
MaeII ACGT 2 cut(s) 1481, 1494
MaeIII GTNAC 5 cut(s) 572, 635, 1105, 1160, 1184
MalI GATC 5 cut(s) 148, 226, 972, 1322, 1389
MboI GATC 5 cut(s) 146, 224, 970, 1320, 1387
MboII GAAGA 8 cut(s) 12, 141, 203, 580, 1330, 1406, 1518, 1739
MfeI CAATTG 1 cut(s) 1473
MflI RGATCY 1 cut(s) 146
MhlI GDGCHC 4 cut(s) 46, 725, 738, 1273
MlyI GAGTC 2 cut(s) 771, 1218
MroXI GAANNNNTTC 3 cut(s) 587, 1286, 1482
MseI TTAA 6 cut(s) 372, 1038, 1218, 1275, 1383, 1797
MslI CAYNNNNRTG 4 cut(s) 995, 1103, 1313, 1331
MspI CCGG 3 cut(s) 287, 450, 617
MspR9I CCNGG 2 cut(s) 1092, 1719
MunI CAATTG 1 cut(s) 1473
Mva1269I GAATGC 1 cut(s) 1674
MvaI CCWGG 2 cut(s) 1092, 1719
MvnI CGCG 2 cut(s) 693, 1179
MwoI GCNNNNNNNGC 4 cut(s) 296, 690, 1469, 1601
NcoI CCATGG 2 cut(s) 856, 930
NdeII GATC 5 cut(s) 146, 224, 970, 1320, 1387
NlaIV GGNNCC 2 cut(s) 215, 1096
NmeAIII GCCGAG 1 cut(s) 1565
NmuCI GTSAC 3 cut(s) 635, 1105, 1160
NspI RCATGY 3 cut(s) 1536, 1612, 1705
OliI CACNNNNGTG 2 cut(s) 995, 1103
PagI TCATGA 3 cut(s) 498, 540, 717
PciI ACATGT 2 cut(s) 1532, 1608
PctI GAATGC 1 cut(s) 1674
PdmI GAANNNNTTC 3 cut(s) 587, 1286, 1482
PfeI GAWTC 3 cut(s) 1140, 1406, 1785
PflFI GACNNNGTC 2 cut(s) 849, 923
PkrI GCNGC 6 cut(s) 76, 646, 875, 949, 1591, 1594
PleI GAGTC 2 cut(s) 770, 1217
PpsI GAGTC 2 cut(s) 770, 1217
Ppu21I YACGTR 1 cut(s) 1495
PscI ACATGT 2 cut(s) 1532, 1608
PshBI ATTAAT 2 cut(s) 1038, 1797
Psp124BI GAGCTC 1 cut(s) 725
Psp1406I AACGTT 1 cut(s) 1481
Psp6I CCWGG 2 cut(s) 1090, 1717
PspEI GGTNACC 1 cut(s) 1160
PspFI CCCAGC 1 cut(s) 1352
PspGI CCWGG 2 cut(s) 1090, 1717
PspN4I GGNNCC 2 cut(s) 215, 1096
PspPI GGNCC 2 cut(s) 1000, 1084
PstI CTGCAG 3 cut(s) 878, 952, 1597
PsuI RGATCY 1 cut(s) 146
PsyI GACNNNGTC 2 cut(s) 849, 923
RsaI GTAC 7 cut(s) 167, 505, 696, 1338, 1493, 1659, 1814
RsaNI GTAC 7 cut(s) 166, 504, 695, 1337, 1492, 1658, 1813
RseI CAYNNNNRTG 4 cut(s) 995, 1103, 1313, 1331
SacI GAGCTC 1 cut(s) 725
SalI GTCGAC 1 cut(s) 272
SaqAI TTAA 6 cut(s) 372, 1038, 1218, 1275, 1383, 1797
SatI GCNGC 6 cut(s) 75, 645, 874, 948, 1590, 1593
Sau3AI GATC 5 cut(s) 146, 224, 970, 1320, 1387
Sau96I GGNCC 2 cut(s) 1000, 1084
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 2 cut(s) 771, 1218
ScrFI CCNGG 2 cut(s) 1092, 1719
SduI GDGCHC 4 cut(s) 46, 725, 738, 1273
SfaNI GCATC 2 cut(s) 560, 1102
SfcI CTRYAG 4 cut(s) 874, 948, 1410, 1593
SinI GGWCC 2 cut(s) 1000, 1084
SmiMI CAYNNNNRTG 4 cut(s) 995, 1103, 1313, 1331
SpeI ACTAGT 1 cut(s) 38
SsiI CCGC 1 cut(s) 1003
SspI AATATT 1 cut(s) 1690
SspMI CTAG 8 cut(s) 39, 153, 396, 440, 956, 1443, 1565, 1770
SstI GAGCTC 1 cut(s) 725
StyD4I CCNGG 2 cut(s) 1090, 1717
StyI CCWWGG 4 cut(s) 246, 382, 856, 930
TaaI ACNGT 2 cut(s) 578, 1491
TaiI ACGT 2 cut(s) 1484, 1497
TaqI TCGA 6 cut(s) 273, 987, 1117, 1467, 1486, 1750
TatI WGTACW 2 cut(s) 165, 503
TfiI GAWTC 3 cut(s) 1140, 1406, 1785
Tru1I TTAA 6 cut(s) 372, 1038, 1218, 1275, 1383, 1797
Tru9I TTAA 6 cut(s) 372, 1038, 1218, 1275, 1383, 1797
TscAI CASTG 5 cut(s) 798, 957, 997, 1012, 1701
TseFI GTSAC 3 cut(s) 635, 1105, 1160
TseI GCWGC 6 cut(s) 74, 644, 873, 947, 1589, 1592
Tsp45I GTSAC 3 cut(s) 635, 1105, 1160
TspDTI ATGAA 8 cut(s) 189, 204, 487, 706, 1132, 1358, 1377, 1439
TspGWI ACGGA 2 cut(s) 237, 507
TspRI CASTG 5 cut(s) 798, 957, 997, 1012, 1701
Tth111I GACNNNGTC 2 cut(s) 849, 923
VpaK11BI GGWCC 2 cut(s) 1000, 1084
VspI ATTAAT 2 cut(s) 1038, 1797
XapI RAATTY 4 cut(s) 131, 204, 584, 1757
XceI RCATGY 3 cut(s) 1536, 1612, 1705
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 3 cut(s) 587, 1286, 1482
XspI CTAG 8 cut(s) 39, 153, 396, 440, 956, 1443, 1565, 1770
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.