Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8109046.1

Orthogroup ID

OG0008580

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 609

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8109046.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ccaggcggtgtcaagcggtcctacccggccactgggtcgtcggtgatgctcccgctcaagatgaacggggttcttgacgggtcgggtcaaccagaggtggaaatcttgatttgcggcgggtcctacggcggcgcttactacaaatcgaaccgggagaacgtctacatcggcgcatccgccagctgcggccggatcaatatctcggatccgaacccgaactgggtcatggaggaaatgccgctgccacgtgtcatgggcgacatgctgctcttgccgaacggtgacgtcctcatccttaacggcgcggcgaacggaacggcagggtgggaggacgcgatcaacccggttttgcacccggtgctgtacaagacctacgagcccgacccgagccgccggtttgtgatactgaacccgaccacaatccccagaatgtaccactcctcgtgtttgctgttgccagatggcagaatactagtgggcgggagcaacccccaccaaatgtacaacttcaggcgagctttcccgaccgagctgagcctggaggcgtatcttccgccgtacctgagccccggctggacccctcggcgccctacgatcatatccatcgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1929 Glyoxal_oxid_N

Protein Analysis

203

Amino Acids

22.19

Weight (kDa)

6.38

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14430
fragaria_vesca	FvH4_4g31980 FvH4_4g31981
malus_domestica	MD13G1079200.v1.1 MD16G1079000.v1.1
prunus_persica	Prupe.1G267600_v2.0.a1
pyrus_communis	pycom13g06890
rosa_chinensis	RchiOBHm_Chr4g0440661 RchiOBHm_Chr4g0440671
rosa_laevigata	RLG00000006160 RLG00000006162
rosa_multiflora	Rmu_co8109046.1_g000001 Rmu_sc0008018.1_g000009 Rmu_sc0008018.1_g000010 Rmu_sc0032009.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381470 Rroxscaffold_5G00381480
rosa_rugosa	Rorug04G0327500 Rorug04G0327500
rosa_samantha	Rh4CG406500 Rh4CG406600 Rh4CG406700
rosa_wichuraiana	Rw4G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	585
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	2 cut(s)	305, 335
AclWI	GGATC	3 cut(s)	200, 200, 213
AcoI	YGGCCR	2 cut(s)	27, 187
AcuI	CTGAAG	1 cut(s)	493
AcvI	CACGTG	1 cut(s)	248
AcyI	GRCGYC	2 cut(s)	285, 586
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	4 cut(s)	365, 434, 503, 560
AfiI	CCNNNNNNNGG	2 cut(s)	32, 220
AflIII	ACRYGT	1 cut(s)	247
AhlI	ACTAGT	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	3 cut(s)	183, 518, 532
AluI	AGCT	3 cut(s)	183, 518, 532
AlwI	GGATC	3 cut(s)	200, 200, 213
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	2 cut(s)	27, 187
ApeKI	GCWGC	3 cut(s)	183, 241, 265
AspLEI	GCGC	4 cut(s)	134, 173, 305, 588
AspS9I	GGNCC	3 cut(s)	18, 120, 576
AsuC2I	CCSGG	5 cut(s)	26, 152, 344, 356, 570
AsuHPI	GGTGA	2 cut(s)	55, 293
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	3 cut(s)	18, 120, 576
BamHI	GGATCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	585
BanII	GRGCYC	2 cut(s)	381, 569
BauI	CACGAG	1 cut(s)	442
BbrPI	CACGTG	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	170, 228, 252
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	4 cut(s)	142, 316, 333, 541
BciT130I	CCWGG	2 cut(s)	3, 539
BcnI	CCSGG	5 cut(s)	26, 152, 344, 356, 570
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	1 cut(s)	473
BfoI	RGCGCY	2 cut(s)	135, 589
BisI	GCNGC	9 cut(s)	115, 130, 184, 187, 239, 242, 266, 306, 391
BlpI	GCTNAGC	1 cut(s)	533
BlsI	GCNGC	9 cut(s)	116, 131, 185, 188, 240, 243, 267, 307, 392
Bme1390I	CCNGG	7 cut(s)	3, 26, 152, 344, 356, 539, 570
Bme18I	GGWCC	3 cut(s)	18, 120, 576
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	3 cut(s)	18, 120, 576
BmiI	GGNNCC	4 cut(s)	121, 207, 578, 587
BmrFI	CCNGG	7 cut(s)	3, 26, 152, 344, 356, 539, 570
BmrI	ACTGGG	2 cut(s)	42, 229
BmsI	GCATC	2 cut(s)	36, 182
BmuI	ACTGGG	2 cut(s)	42, 229
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	563
Bpu1102I	GCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	5 cut(s)	26, 152, 344, 356, 570
BsaAI	YACGTR	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	197
BsaHI	GRCGYC	2 cut(s)	285, 586
BsaJI	CCNNGG	2 cut(s)	568, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 220
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	2 cut(s)	37, 224
Bse8I	GATNNNNATC	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	3, 539
BseDI	CCNNGG	2 cut(s)	568, 581
BseGI	GGATG	2 cut(s)	173, 291
BseJI	GATNNNNATC	1 cut(s)	197
BseLI	CCNNNNNNNGG	2 cut(s)	32, 220
BseMII	CTCAG	2 cut(s)	524, 554
BseNI	ACTGG	2 cut(s)	37, 224
BseRI	GAGGAG	1 cut(s)	430
BseX3I	CGGCCG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	170, 228, 252
Bsh1236I	CGCG	2 cut(s)	305, 335
Bsh1285I	CGRYCG	2 cut(s)	190, 528
BshFI	GGCC	2 cut(s)	29, 189
BshNI	GGYRCC	1 cut(s)	585
BsiEI	CGRYCG	2 cut(s)	190, 528
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	7 cut(s)	26, 151, 190, 344, 356, 394, 570
BslI	CCNNNNNNNGG	2 cut(s)	32, 220
BsnI	GGCC	2 cut(s)	29, 189
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	381, 569
Bsp1407I	TGTACA	2 cut(s)	363, 501
Bsp143I	GATC	4 cut(s)	192, 205, 336, 594
Bsp1720I	GCTNAGC	1 cut(s)	533
BspANI	GGCC	2 cut(s)	29, 189
BspCNI	CTCAG	2 cut(s)	525, 555
BspFNI	CGCG	2 cut(s)	305, 335
BspLI	GGNNCC	4 cut(s)	121, 207, 578, 587
BspPI	GGATC	3 cut(s)	200, 200, 213
BspT107I	GGYRCC	1 cut(s)	585
BsrBI	CCGCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	393
BsrGI	TGTACA	2 cut(s)	363, 501
BsrI	ACTGG	2 cut(s)	37, 224
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	568, 581
BssMI	GATC	4 cut(s)	192, 205, 336, 594
BssNI	GRCGYC	2 cut(s)	285, 586
BssSI	CACGAG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	442
Bst2UI	CCWGG	2 cut(s)	3, 539
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	2 cut(s)	285, 586
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstAUI	TGTACA	2 cut(s)	363, 501
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	181, 516
BstDEI	CTNAG	2 cut(s)	533, 563
BstF5I	GGATG	2 cut(s)	173, 291
BstFNI	CGCG	2 cut(s)	305, 335
BstH2I	RGCGCY	2 cut(s)	135, 589
BstHHI	GCGC	4 cut(s)	134, 173, 305, 588
BstKTI	GATC	4 cut(s)	195, 208, 339, 597
BstMBI	GATC	4 cut(s)	192, 205, 336, 594
BstMCI	CGRYCG	2 cut(s)	190, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 358
BstNI	CCWGG	2 cut(s)	3, 539
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	6 cut(s)	24, 150, 342, 354, 537, 568
BstUI	CGCG	2 cut(s)	305, 335
BstV1I	GCAGC	3 cut(s)	170, 228, 252
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BstZI	CGGCCG	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	29, 189
BtsCI	GGATG	2 cut(s)	173, 291
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	181, 516
CfoI	GCGC	4 cut(s)	134, 173, 305, 588
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	3 cut(s)	18, 120, 576
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	4 cut(s)	364, 433, 502, 559
CviAII	CATG	3 cut(s)	226, 253, 262
CviQI	GTAC	4 cut(s)	364, 433, 502, 559
DdeI	CTNAG	2 cut(s)	533, 563
DinI	GGCGCC	1 cut(s)	587
DpnI	GATC	4 cut(s)	194, 207, 338, 596
DpnII	GATC	4 cut(s)	192, 205, 336, 594
DraIII	CACNNNGTG	1 cut(s)	358
EaeI	YGGCCR	2 cut(s)	27, 187
EagI	CGGCCG	1 cut(s)	187
EciI	GGCGGA	2 cut(s)	166, 543
EclXI	CGGCCG	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	381, 569
Eco47I	GGWCC	3 cut(s)	18, 120, 576
Eco52I	CGGCCG	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	493
Eco72I	CACGTG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	537
EcoT38I	GRGCYC	2 cut(s)	381, 569
EgeI	GGCGCC	1 cut(s)	587
EheI	GGCGCC	1 cut(s)	587
FaeI	CATG	3 cut(s)	229, 256, 265
FaiI	YATR	4 cut(s)	227, 254, 263, 599
FatI	CATG	3 cut(s)	225, 252, 261
FauI	CCCGC	3 cut(s)	60, 110, 473
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	9 cut(s)	115, 130, 184, 187, 239, 242, 266, 306, 391
FokI	GGATG	2 cut(s)	160, 278
FriOI	GRGCYC	2 cut(s)	381, 569
Fsp4HI	GCNGC	9 cut(s)	115, 130, 184, 187, 239, 242, 266, 306, 391
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	4 cut(s)	133, 172, 304, 587
GluI	GCNGC	9 cut(s)	115, 130, 184, 187, 239, 242, 266, 306, 391
GsuI	CTGGAG	1 cut(s)	560
HaeII	RGCGCY	2 cut(s)	135, 589
HaeIII	GGCC	2 cut(s)	29, 189
HapII	CCGG	7 cut(s)	26, 151, 190, 344, 356, 394, 570
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	4 cut(s)	134, 173, 305, 588
Hin1I	GRCGYC	2 cut(s)	285, 586
Hin1II	CATG	3 cut(s)	229, 256, 265
Hin6I	GCGC	4 cut(s)	132, 171, 303, 586
HinP1I	GCGC	4 cut(s)	132, 171, 303, 586
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HpaII	CCGG	7 cut(s)	26, 151, 190, 344, 356, 394, 570
HphI	GGTGA	2 cut(s)	55, 293
Hpy166II	GTNNAC	2 cut(s)	89, 163
Hpy188I	TCNGA	2 cut(s)	205, 210
Hpy188III	TCNNGA	4 cut(s)	58, 74, 106, 523
Hpy8I	GTNNAC	2 cut(s)	89, 163
Hpy99I	CGWCG	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	3 cut(s)	159, 247, 285
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 358
HpyF3I	CTNAG	2 cut(s)	533, 563
HpySE526I	ACGT	3 cut(s)	159, 247, 285
Hsp92I	GRCGYC	2 cut(s)	285, 586
Hsp92II	CATG	3 cut(s)	229, 256, 265
HspAI	GCGC	4 cut(s)	132, 171, 303, 586
KasI	GGCGCC	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	192, 205, 336, 594
LmnI	GCTCC	2 cut(s)	54, 483
Lsp1109I	GCAGC	3 cut(s)	170, 228, 252
LweI	GCATC	2 cut(s)	36, 182
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	3 cut(s)	159, 247, 285
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	4 cut(s)	194, 207, 338, 596
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	4 cut(s)	192, 205, 336, 594
MboII	GAAGA	1 cut(s)	542
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	2 cut(s)	381, 569
Mly113I	GGCGCC	1 cut(s)	586
MnlI	CCTC	7 cut(s)	88, 223, 299, 322, 451, 535, 591
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	2 cut(s)	183, 241
MspI	CCGG	7 cut(s)	26, 151, 190, 344, 356, 394, 570
MspR9I	CCNGG	7 cut(s)	3, 26, 152, 344, 356, 539, 570
MvaI	CCWGG	2 cut(s)	3, 539
MvnI	CGCG	2 cut(s)	305, 335
MwoI	GCNNNNNNNGC	2 cut(s)	271, 358
NarI	GGCGCC	1 cut(s)	586
NciI	CCSGG	5 cut(s)	26, 152, 344, 356, 570
NdeII	GATC	4 cut(s)	192, 205, 336, 594
NlaIII	CATG	3 cut(s)	229, 256, 265
NlaIV	GGNNCC	4 cut(s)	121, 207, 578, 587
NmeAIII	GCCGAG	1 cut(s)	562
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	265
PkrI	GCNGC	9 cut(s)	116, 131, 185, 188, 240, 243, 267, 307, 392
PluTI	GGCGCC	1 cut(s)	589
PmaCI	CACGTG	1 cut(s)	248
PmlI	CACGTG	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	537
PspCI	CACGTG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	4 cut(s)	121, 207, 578, 587
PspPI	GGNCC	3 cut(s)	18, 120, 576
PspPPI	RGGWCCY	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	183
RsaI	GTAC	4 cut(s)	365, 434, 503, 560
RsaNI	GTAC	4 cut(s)	364, 433, 502, 559
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	9 cut(s)	115, 130, 184, 187, 239, 242, 266, 306, 391
Sau3AI	GATC	4 cut(s)	192, 205, 336, 594
Sau96I	GGNCC	3 cut(s)	18, 120, 576
ScrFI	CCNGG	7 cut(s)	3, 26, 152, 344, 356, 539, 570
SduI	GDGCHC	2 cut(s)	381, 569
SetI	ASST	9 cut(s)	99, 162, 185, 250, 288, 374, 520, 534, 564
SfaNI	GCATC	2 cut(s)	36, 182
SfoI	GGCGCC	1 cut(s)	587
SinI	GGWCC	3 cut(s)	18, 120, 576
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SpeI	ACTAGT	1 cut(s)	472
SspDI	GGCGCC	1 cut(s)	585
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	6 cut(s)	24, 150, 342, 354, 537, 568
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	3 cut(s)	162, 250, 288
TaqI	TCGA	2 cut(s)	146, 606
TaqII	GACCGA	1 cut(s)	542
TatI	WGTACW	2 cut(s)	363, 501
TauI	GCSGC	6 cut(s)	117, 132, 189, 241, 308, 393
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	183, 241, 265
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	3 cut(s)	18, 120, 576
XceI	RCATGY	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	473
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.