Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008018.1

Orthogroup ID

OG0008580

Physical Location & Seq

Genomic Coordinates Forward (+)

38668 .. 39801

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008018.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggctttattattatcccccatcttctcctttattcttctctccctctatgtctccccctccttttatgcgcatccgagcaaggaaactgcggcggaagctctttcagccgtcgcttccaacggaggaggagagtgggttcttcttcaaaaaagcatcggagtctcggcaatgcacatgcagcttctcaagaacaacagagtcatcatcttcgaccgcaccaacatcggcccttccaacctcacactccccgaggacaaaaagtactgcctcaactacaccatccacaacaaacccgagctccttatagactgcaccgcgcactccgtctcctacgacgtcgcttccaacactttccgccccctcgtcgtccgcaccgacccgtggtgctcctccggctccgtggaccctaccggaactctaatccaggccggaggctacggcaccggcagccgcggcgtccgcacggtcccgccctgcgacgacgacacgtgtgactggacggaacatcagcaagacagcctcgcggagaacaggtggtacgcctcgtcgcaaatcctccccgacggacgcgtcatcttcgtcggaggcagaaaagctttcacgtacgagttctatcccaaaacaaacgacaggccgtcggataaatatttcctaaaatttttggtagagacttatgatcagagagaggagaacaatctctatccatttttgcatctcttgcctgacgggaacctcttcttgtttgcaaacaaccgggtcatcaaggagtttccggtcatgcccggcggcgtcaagaggaactacccgagcacggggtcgtccaaattttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1929 Glyoxal_oxid_N

Protein Analysis

278

Amino Acids

31.15

Weight (kDa)

6.3

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14430
fragaria_vesca	FvH4_4g31980 FvH4_4g31981
malus_domestica	MD13G1079200.v1.1 MD16G1079000.v1.1
prunus_persica	Prupe.1G267600_v2.0.a1
pyrus_communis	pycom13g06890
rosa_chinensis	RchiOBHm_Chr4g0440661 RchiOBHm_Chr4g0440671
rosa_laevigata	RLG00000006160 RLG00000006162
rosa_multiflora	Rmu_co8109046.1_g000001 Rmu_sc0008018.1_g000009 Rmu_sc0008018.1_g000010 Rmu_sc0032009.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381470 Rroxscaffold_5G00381480
rosa_rugosa	Rorug04G0327500 Rorug04G0327500
rosa_samantha	Rh4CG406500 Rh4CG406600 Rh4CG406700
rosa_wichuraiana	Rw4G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	572
AatII	GACGTC	1 cut(s)	342
Acc16I	TGCGCA	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	831
AccII	CGCG	4 cut(s)	320, 456, 527, 573
AcsI	RAATTY	2 cut(s)	659, 827
AcvI	CACGTG	1 cut(s)	492
AcyI	GRCGYC	3 cut(s)	339, 459, 792
AfaI	GTAC	3 cut(s)	266, 542, 608
AfiI	CCNNNNNNNGG	4 cut(s)	384, 814, 815, 831
AflIII	ACRYGT	3 cut(s)	489, 491, 571
AgsI	TTSAA	1 cut(s)	149
AhdI	GACNNNNNGTC	1 cut(s)	637
AjnI	CCWGG	1 cut(s)	426
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
AluBI	AGCT	4 cut(s)	101, 184, 301, 599
AluI	AGCT	4 cut(s)	101, 184, 301, 599
Alw21I	GWGCWC	3 cut(s)	303, 392, 815
Alw26I	GTCTC	4 cut(s)	58, 169, 334, 665
Ama87I	CYCGRG	3 cut(s)	251, 296, 808
AoxI	GGCC	3 cut(s)	229, 429, 635
ApeKI	GCWGC	2 cut(s)	181, 450
ApoI	RAATTY	2 cut(s)	659, 827
Asp700I	GAANNNNTTC	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	73, 322
AspS9I	GGNCC	3 cut(s)	230, 406, 469
AsuC2I	CCSGG	2 cut(s)	758, 786
AvaI	CYCGRG	3 cut(s)	251, 296, 808
AvaII	GGWCC	2 cut(s)	406, 469
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	303
BbrPI	CACGTG	1 cut(s)	492
Bbv12I	GWGCWC	3 cut(s)	303, 392, 815
BbvI	GCAGC	2 cut(s)	193, 462
BccI	CCATC	2 cut(s)	29, 290
BceAI	ACGGC	3 cut(s)	95, 457, 622
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	1 cut(s)	428
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	2 cut(s)	758, 786
BcoDI	GTCTC	4 cut(s)	58, 169, 334, 665
BisI	GCNGC	6 cut(s)	93, 182, 451, 454, 457, 790
BlsI	GCNGC	6 cut(s)	94, 183, 452, 455, 458, 791
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	3 cut(s)	428, 758, 786
Bme18I	GGWCC	2 cut(s)	406, 469
BmeRI	GACNNNNNGTC	1 cut(s)	637
BmeT110I	CYCGRG	3 cut(s)	251, 296, 808
BmgT120I	GGNCC	3 cut(s)	230, 406, 469
BmiI	GGNNCC	5 cut(s)	400, 408, 445, 471, 734
BmrFI	CCNGG	3 cut(s)	428, 758, 786
BmsI	GCATC	3 cut(s)	82, 165, 724
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	758, 786
BsaAI	YACGTR	2 cut(s)	492, 606
BsaHI	GRCGYC	3 cut(s)	339, 459, 792
BsaJI	CCNNGG	4 cut(s)	252, 383, 402, 454
BsaWI	WCCGGW	2 cut(s)	413, 775
BsaXI	ACNNNNNCTCC	8 cut(s)	123, 153, 285, 314, 315, 344, 521, 551
Bsc4I	CCNNNNNNNGG	4 cut(s)	384, 814, 815, 831
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	503
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	4 cut(s)	252, 383, 402, 454
BseGI	GGATG	2 cut(s)	73, 282
BseLI	CCNNNNNNNGG	4 cut(s)	384, 814, 815, 831
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	4 cut(s)	141, 144, 382, 704
BseXI	GCAGC	2 cut(s)	193, 462
BsgI	GTGCAG	1 cut(s)	298
Bsh1236I	CGCG	4 cut(s)	320, 456, 527, 573
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	231, 431, 637
BshNI	GGYRCC	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	3 cut(s)	303, 392, 815
BsiHKCI	CYCGRG	3 cut(s)	251, 296, 808
BsiSI	CCGG	7 cut(s)	396, 414, 432, 447, 757, 776, 786
BsiWI	CGTACG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	4 cut(s)	384, 814, 815, 831
BsmAI	GTCTC	4 cut(s)	58, 169, 334, 665
BsmBI	CGTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	3 cut(s)	231, 431, 637
BsoBI	CYCGRG	3 cut(s)	251, 296, 808
Bsp1286I	GDGCHC	3 cut(s)	303, 392, 815
Bsp143I	GATC	1 cut(s)	679
BspANI	GGCC	3 cut(s)	231, 431, 637
BspFNI	CGCG	4 cut(s)	320, 456, 527, 573
BspLI	GGNNCC	5 cut(s)	400, 408, 445, 471, 734
BspT107I	GGYRCC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	4 cut(s)	252, 383, 402, 454
BssMI	GATC	1 cut(s)	679
BssNI	GRCGYC	3 cut(s)	339, 459, 792
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	743
BstACI	GRCGYC	3 cut(s)	339, 459, 792
BstAPI	GCANNNNNTGC	1 cut(s)	721
BstBAI	YACGTR	2 cut(s)	492, 606
BstDSI	CCRYGG	3 cut(s)	383, 402, 454
BstF5I	GGATG	2 cut(s)	73, 282
BstFNI	CGCG	4 cut(s)	320, 456, 527, 573
BstHHI	GCGC	2 cut(s)	73, 322
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	4 cut(s)	58, 169, 334, 665
BstMBI	GATC	1 cut(s)	679
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	8 cut(s)	98, 107, 181, 396, 450, 456, 462, 721
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	426, 756, 784
BstUI	CGCG	4 cut(s)	320, 456, 527, 573
BstV1I	GCAGC	2 cut(s)	193, 462
BsuRI	GGCC	3 cut(s)	231, 431, 637
BtgI	CCRYGG	3 cut(s)	383, 402, 454
BtsCI	GGATG	2 cut(s)	73, 282
CfoI	GCGC	2 cut(s)	73, 322
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	3 cut(s)	230, 406, 469
Cfr42I	CCGCGG	1 cut(s)	457
CseI	GACGC	4 cut(s)	448, 562, 579, 781
Csp6I	GTAC	3 cut(s)	265, 541, 607
CviAII	CATG	2 cut(s)	178, 781
CviQI	GTAC	3 cut(s)	265, 541, 607
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
DrdI	GACNNNNNNGTC	1 cut(s)	572
DriI	GACNNNNNGTC	1 cut(s)	637
DseDI	GACNNNNNNGTC	1 cut(s)	572
Eam1104I	CTCTTC	1 cut(s)	743
Eam1105I	GACNNNNNGTC	1 cut(s)	637
EarI	CTCTTC	1 cut(s)	743
EciI	GGCGGA	2 cut(s)	110, 347
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	406, 469
Eco53kI	GAGCTC	1 cut(s)	301
Eco72I	CACGTG	1 cut(s)	492
Eco88I	CYCGRG	3 cut(s)	251, 296, 808
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	2 cut(s)	181, 784
FaiI	YATR	6 cut(s)	51, 69, 179, 308, 678, 782
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	2 cut(s)	177, 780
FauI	CCCGC	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	6 cut(s)	93, 182, 451, 454, 457, 790
FokI	GGATG	2 cut(s)	60, 269
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	6 cut(s)	93, 182, 451, 454, 457, 790
FspAI	RTGCGCAY	1 cut(s)	72
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	2 cut(s)	72, 321
GluI	GCNGC	6 cut(s)	93, 182, 451, 454, 457, 790
HaeIII	GGCC	3 cut(s)	231, 431, 637
HapII	CCGG	7 cut(s)	396, 414, 432, 447, 757, 776, 786
HgaI	GACGC	4 cut(s)	448, 562, 579, 781
HhaI	GCGC	2 cut(s)	73, 322
Hin1I	GRCGYC	3 cut(s)	339, 459, 792
Hin1II	CATG	2 cut(s)	181, 784
Hin6I	GCGC	2 cut(s)	71, 320
HinP1I	GCGC	2 cut(s)	71, 320
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	2 cut(s)	162, 201
HpaII	CCGG	7 cut(s)	396, 414, 432, 447, 757, 776, 786
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	5 cut(s)	78, 161, 587, 643, 684
Hpy188III	TCNNGA	2 cut(s)	190, 796
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	3 cut(s)	339, 491, 605
HpyCH4V	TGCA	5 cut(s)	175, 181, 315, 715, 749
HpyF10VI	GCNNNNNNNGC	8 cut(s)	98, 107, 181, 396, 450, 456, 462, 721
HpySE526I	ACGT	3 cut(s)	339, 491, 605
Hsp92I	GRCGYC	3 cut(s)	339, 459, 792
Hsp92II	CATG	2 cut(s)	181, 784
HspAI	GCGC	2 cut(s)	71, 320
Ksp22I	TGATCA	1 cut(s)	679
KspI	CCGCGG	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	679
LmnI	GCTCC	3 cut(s)	306, 395, 404
Lsp1109I	GCAGC	2 cut(s)	193, 462
LweI	GCATC	3 cut(s)	82, 165, 724
MaeII	ACGT	3 cut(s)	339, 491, 605
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	1 cut(s)	681
MboI	GATC	1 cut(s)	679
MboII	GAAGA	7 cut(s)	16, 29, 134, 137, 202, 571, 730
MhlI	GDGCHC	3 cut(s)	303, 392, 815
MluCI	AATT	2 cut(s)	659, 827
MluI	ACGCGT	1 cut(s)	571
MlyI	GAGTC	2 cut(s)	171, 210
MmeI	TCCRAC	5 cut(s)	144, 261, 372, 565, 621
MroXI	GAANNNNTTC	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	7 cut(s)	396, 414, 432, 447, 757, 776, 786
MspR9I	CCNGG	3 cut(s)	428, 758, 786
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	4 cut(s)	320, 456, 527, 573
MwoI	GCNNNNNNNGC	8 cut(s)	98, 107, 181, 396, 450, 456, 462, 721
NciI	CCSGG	2 cut(s)	758, 786
NdeII	GATC	1 cut(s)	679
NlaIII	CATG	2 cut(s)	181, 784
NlaIV	GGNNCC	5 cut(s)	400, 408, 445, 471, 734
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	494
NsbI	TGCGCA	1 cut(s)	72
NspI	RCATGY	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	737
Pfl23II	CGTACG	1 cut(s)	606
PflMI	CCANNNNNTGG	1 cut(s)	831
PkrI	GCNGC	6 cut(s)	94, 183, 452, 455, 458, 791
PleI	GAGTC	2 cut(s)	170, 209
PmaCI	CACGTG	1 cut(s)	492
PmlI	CACGTG	1 cut(s)	492
PpsI	GAGTC	2 cut(s)	170, 209
Ppu21I	YACGTR	2 cut(s)	492, 606
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	426
PspCI	CACGTG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	426
PspLI	CGTACG	1 cut(s)	606
PspN4I	GGNNCC	5 cut(s)	400, 408, 445, 471, 734
PspPI	GGNCC	3 cut(s)	230, 406, 469
PsrI	GAACNNNNNNTAC	2 cut(s)	524, 556
RsaI	GTAC	3 cut(s)	266, 542, 608
RsaNI	GTAC	3 cut(s)	265, 541, 607
SacI	GAGCTC	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	457
SatI	GCNGC	6 cut(s)	93, 182, 451, 454, 457, 790
Sau3AI	GATC	1 cut(s)	679
Sau96I	GGNCC	3 cut(s)	230, 406, 469
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	2 cut(s)	171, 210
ScrFI	CCNGG	3 cut(s)	428, 758, 786
SduI	GDGCHC	3 cut(s)	303, 392, 815
SfaNI	GCATC	3 cut(s)	82, 165, 724
Sfr303I	CCGCGG	1 cut(s)	457
SgrBI	CCGCGG	1 cut(s)	457
SinI	GGWCC	2 cut(s)	406, 469
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	659, 827
SspI	AATATT	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	426, 756, 784
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	3 cut(s)	342, 494, 608
TaqI	TCGA	1 cut(s)	213
TasI	AATT	2 cut(s)	659, 827
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	4 cut(s)	95, 456, 459, 792
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	2 cut(s)	181, 450
Tsp45I	GTSAC	1 cut(s)	494
TspGWI	ACGGA	5 cut(s)	138, 316, 391, 518, 582
Van91I	CCANNNNNTGG	1 cut(s)	831
VpaK11BI	GGWCC	2 cut(s)	406, 469
XapI	RAATTY	2 cut(s)	659, 827
XceI	RCATGY	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	737
ZraI	GACGTC	1 cut(s)	340
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.