Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008580

Physical Location & Seq

Genomic Coordinates Forward (+)

65341583 .. 65343120

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG406600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCCCGGCGGCGTCAAGAGGAACTACCCGAGCACCGGGTCGTCGGTGCTCCTCCCGCTCAAAATAAACGGGTTGGGTTTACCCGAAGCCGAGGTGTTGATATGCGGCGGAGCAGAGCTTGGTGCGTTTTCATTGACAGATGGAAAGTCGGACAAAAAGAAAGTGTTCAAGGGAGCCTCTAGCACTTGTGGTAGGATCAAAGTGACGGACCCGGATCCCAAATGGGCCATGGAGACGCTGCCCATGCCACGTGTCATGCCGGACATGCTGTTGTTACCGACGGGTGACGTGATCATCATCAACGGCGCGTTGAATGGGACTGCGGGCTGGGAAGATGCGACAAACCCGGTTTTGAACCCGGTTCTTTACAAGACCTATGAGAACAAACCGGAATCTCGGTTCACTGTACTCACTCCCTCTGAAATTCTGAGAATGTACCACTCCTCGGCCGTGCTTTTGCCAGATGGCAGGATATTAGTGGGCGGAAGCAACACTCACGAAAGGTACAGTTTCAGACGAACATTCCCTACTGACCTCAGCTTGGAGGCTTATATTCCGCCGTACCTGGGCCACACCTTCCATACCCTGCGTCCTACAATCCTGTCCGTTGAATCGAGGACTAAGACTGTATCGTACGGTCAAAATTTCGGGGTTAAGTTTCGGTTAGATGTGCGTACAGATGATTCTTCCAAGTTTTCATTGGCCATCGTAACGCCGTCGTTTACGACGCACTCGTTTGCTATGAATCAGAGGATGGTGGTTTTGGAGATTGTTAGGTTGAAGCATTTAAACAGTAGATATAGAAAGCCGTCGGATAAGTATGATTACATGATTGTGGCCCGCGGCCCACCGAAGAACACGGTGGCGCCGCCGGGTTACTATATGCTTTTCCTTGTTCATGCTGGAATTCCTGCCCAGGCTACTTGGGTGAAGGTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1929 Glyoxal_oxid_N

Protein Analysis

313

Amino Acids

34.64

Weight (kDa)

9.48

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxal_oxid_N	PF07250	1 - 188	5.4e-77	Glyoxal oxidase N-terminus
GO-like_E_set	PF09118	197 - 312	2.5e-27	Galactose oxidase-like, Early set domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14430
fragaria_vesca	FvH4_4g31980 FvH4_4g31981
malus_domestica	MD13G1079200.v1.1 MD16G1079000.v1.1
prunus_persica	Prupe.1G267600_v2.0.a1
pyrus_communis	pycom13g06890
rosa_chinensis	RchiOBHm_Chr4g0440661 RchiOBHm_Chr4g0440671
rosa_laevigata	RLG00000006160 RLG00000006162
rosa_multiflora	Rmu_co8109046.1_g000001 Rmu_sc0008018.1_g000009 Rmu_sc0008018.1_g000010 Rmu_sc0032009.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381470 Rroxscaffold_5G00381480
rosa_rugosa	Rorug04G0327500 Rorug04G0327500
rosa_samantha	Rh4CG406500 Rh4CG406600 Rh4CG406700
rosa_wichuraiana	Rw4G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	865
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	2 cut(s)	308, 843
AclWI	GGATC	3 cut(s)	203, 209, 222
AcoI	YGGCCR	2 cut(s)	447, 702
AcsI	RAATTY	3 cut(s)	423, 643, 906
AcvI	CACGTG	1 cut(s)	251
AcyI	GRCGYC	2 cut(s)	12, 866
AfaI	GTAC	6 cut(s)	408, 437, 506, 563, 635, 676
AfiI	CCNNNNNNNGG	4 cut(s)	35, 445, 541, 566
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	5 cut(s)	169, 313, 355, 611, 781
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	564, 915
AloI	GAACNNNNNNTCC	2 cut(s)	383, 415
AluBI	AGCT	2 cut(s)	118, 540
AluI	AGCT	2 cut(s)	118, 540
Alw21I	GWGCWC	2 cut(s)	35, 51
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	3 cut(s)	203, 209, 222
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	6 cut(s)	225, 447, 568, 702, 837, 844
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	3 cut(s)	423, 643, 906
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	308, 868
AspS9I	GGNCC	5 cut(s)	208, 225, 568, 838, 845
AsuC2I	CCSGG	6 cut(s)	6, 37, 212, 347, 359, 873
AsuHPI	GGTGA	2 cut(s)	296, 940
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	865
BbrPI	CACGTG	1 cut(s)	251
Bbv12I	GWGCWC	2 cut(s)	35, 51
BbvCI	CCTCAGC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	4 cut(s)	134, 458, 713, 748
BceAI	ACGGC	5 cut(s)	319, 434, 544, 700, 793
BciT130I	CCWGG	2 cut(s)	566, 917
BclI	TGATCA	1 cut(s)	291
BcnI	CCSGG	6 cut(s)	6, 37, 212, 347, 359, 873
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	869
BisI	GCNGC	5 cut(s)	10, 106, 239, 844, 869
BlsI	GCNGC	5 cut(s)	11, 107, 240, 845, 870
Bme1390I	CCNGG	8 cut(s)	6, 37, 212, 347, 359, 566, 873, 917
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	5 cut(s)	208, 225, 568, 838, 845
BmiI	GGNNCC	4 cut(s)	175, 210, 216, 867
BmrFI	CCNGG	8 cut(s)	6, 37, 212, 347, 359, 566, 873, 917
BmsI	GCATC	1 cut(s)	325
Bpu10I	CCTNAGC	1 cut(s)	536
BpuMI	CCSGG	6 cut(s)	6, 37, 212, 347, 359, 873
BsaAI	YACGTR	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	296
BsaHI	GRCGYC	2 cut(s)	12, 866
BsaJI	CCNNGG	6 cut(s)	90, 228, 444, 565, 841, 915
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 445, 541, 566
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	566, 917
BseDI	CCNNGG	6 cut(s)	90, 228, 444, 565, 841, 915
BseGI	GGATG	1 cut(s)	759
BseJI	GATNNNNATC	1 cut(s)	296
BseLI	CCNNNNNNNGG	4 cut(s)	35, 445, 541, 566
BseMII	CTCAG	2 cut(s)	419, 550
BseRI	GAGGAG	2 cut(s)	41, 433
BseX3I	CGGCCG	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	327
Bsh1236I	CGCG	2 cut(s)	308, 843
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	6 cut(s)	227, 449, 570, 704, 839, 846
BshNI	GGYRCC	1 cut(s)	865
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	2 cut(s)	35, 51
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	8 cut(s)	6, 36, 212, 260, 347, 359, 389, 872
BsiWI	CGTACG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	4 cut(s)	35, 445, 541, 566
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	6 cut(s)	227, 449, 570, 704, 839, 846
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	35, 51
Bsp143I	GATC	3 cut(s)	195, 214, 291
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	6 cut(s)	227, 449, 570, 704, 839, 846
BspCNI	CTCAG	2 cut(s)	420, 549
BspFNI	CGCG	2 cut(s)	308, 843
BspLI	GGNNCC	4 cut(s)	175, 210, 216, 867
BspPI	GGATC	3 cut(s)	203, 209, 222
BspT107I	GGYRCC	1 cut(s)	865
BsrBI	CCGCTC	1 cut(s)	58
BssECI	CCNNGG	6 cut(s)	90, 228, 444, 565, 841, 915
BssMI	GATC	3 cut(s)	195, 214, 291
BssNI	GRCGYC	2 cut(s)	12, 866
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	566, 917
Bst4CI	ACNGT	6 cut(s)	406, 509, 628, 638, 794, 862
BstACI	GRCGYC	2 cut(s)	12, 866
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	325, 841
BstDEI	CTNAG	3 cut(s)	428, 536, 621
BstDSI	CCRYGG	2 cut(s)	228, 841
BstF5I	GGATG	1 cut(s)	759
BstFNI	CGCG	2 cut(s)	308, 843
BstH2I	RGCGCY	1 cut(s)	869
BstHHI	GCGC	2 cut(s)	308, 868
BstKTI	GATC	3 cut(s)	198, 217, 294
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	195, 214, 291
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 244, 265
BstNI	CCWGG	2 cut(s)	566, 917
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	8 cut(s)	4, 35, 210, 345, 357, 564, 871, 915
BstUI	CGCG	2 cut(s)	308, 843
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BstZI	CGGCCG	1 cut(s)	447
BsuRI	GGCC	6 cut(s)	227, 449, 570, 704, 839, 846
BtgI	CCRYGG	2 cut(s)	228, 841
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	325, 841
CfoI	GCGC	2 cut(s)	308, 868
Cfr13I	GGNCC	5 cut(s)	208, 225, 568, 838, 845
Cfr42I	CCGCGG	1 cut(s)	844
CseI	GACGC	3 cut(s)	244, 578, 736
Csp6I	GTAC	6 cut(s)	407, 436, 505, 562, 634, 675
CviAII	CATG	6 cut(s)	229, 244, 256, 265, 829, 899
CviQI	GTAC	6 cut(s)	407, 436, 505, 562, 634, 675
DdeI	CTNAG	3 cut(s)	428, 536, 621
DinI	GGCGCC	1 cut(s)	867
DpnI	GATC	3 cut(s)	197, 216, 293
DpnII	GATC	3 cut(s)	195, 214, 291
DraI	TTTAAA	1 cut(s)	789
EaeI	YGGCCR	2 cut(s)	447, 702
EagI	CGGCCG	1 cut(s)	447
EciI	GGCGGA	3 cut(s)	123, 498, 546
EclXI	CGGCCG	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	208
Eco52I	CGGCCG	1 cut(s)	447
Eco72I	CACGTG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	906
EcoRII	CCWGG	2 cut(s)	564, 915
EcoT14I	CCWWGG	1 cut(s)	228
EgeI	GGCGCC	1 cut(s)	867
EheI	GGCGCC	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	6 cut(s)	232, 247, 259, 268, 832, 902
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	6 cut(s)	228, 243, 255, 264, 828, 898
FauI	CCCGC	3 cut(s)	63, 316, 848
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	5 cut(s)	10, 106, 239, 844, 869
FokI	GGATG	1 cut(s)	766
Fsp4HI	GCNGC	5 cut(s)	10, 106, 239, 844, 869
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	2 cut(s)	307, 867
GluI	GCNGC	5 cut(s)	10, 106, 239, 844, 869
GsaI	CCCAGC	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	869
HaeIII	GGCC	6 cut(s)	227, 449, 570, 704, 839, 846
HapII	CCGG	8 cut(s)	6, 36, 212, 260, 347, 359, 389, 872
HgaI	GACGC	3 cut(s)	244, 578, 736
HhaI	GCGC	2 cut(s)	308, 868
Hin1I	GRCGYC	2 cut(s)	12, 866
Hin1II	CATG	6 cut(s)	232, 247, 259, 268, 832, 902
Hin6I	GCGC	2 cut(s)	306, 866
HinP1I	GCGC	2 cut(s)	306, 866
HinfI	GANTC	4 cut(s)	392, 611, 683, 745
HpaII	CCGG	8 cut(s)	6, 36, 212, 260, 347, 359, 389, 872
HphI	GGTGA	2 cut(s)	296, 940
Hpy166II	GTNNAC	3 cut(s)	80, 402, 723
Hpy188I	TCNGA	6 cut(s)	151, 421, 429, 515, 750, 814
Hpy188III	TCNNGA	2 cut(s)	16, 497
Hpy8I	GTNNAC	3 cut(s)	80, 402, 723
Hpy99I	CGWCG	5 cut(s)	46, 283, 721, 730, 814
HpyAV	CCTTC	2 cut(s)	586, 925
HpyCH4III	ACNGT	6 cut(s)	406, 509, 628, 638, 794, 862
HpyCH4IV	ACGT	2 cut(s)	250, 288
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 244, 265
HpyF3I	CTNAG	3 cut(s)	428, 536, 621
HpySE526I	ACGT	2 cut(s)	250, 288
Hsp92I	GRCGYC	2 cut(s)	12, 866
Hsp92II	CATG	6 cut(s)	232, 247, 259, 268, 832, 902
HspAI	GCGC	2 cut(s)	306, 866
KasI	GGCGCC	1 cut(s)	865
Ksp22I	TGATCA	1 cut(s)	291
KspI	CCGCGG	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	195, 214, 291
LmnI	GCTCC	3 cut(s)	54, 110, 173
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	2 cut(s)	250, 288
MaeIII	GTNAC	5 cut(s)	202, 273, 284, 709, 875
MalI	GATC	3 cut(s)	197, 216, 293
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	3 cut(s)	195, 214, 291
MboII	GAAGA	3 cut(s)	344, 678, 865
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	35, 51
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	3 cut(s)	423, 643, 906
MluNI	TGGCCA	1 cut(s)	704
Mly113I	GGCGCC	1 cut(s)	866
MmeI	TCCRAC	2 cut(s)	129, 792
Mox20I	TGGCCA	1 cut(s)	704
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	2 cut(s)	654, 788
MslI	CAYNNNNRTG	1 cut(s)	833
Msp20I	TGGCCA	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	843
MspI	CCGG	8 cut(s)	6, 36, 212, 260, 347, 359, 389, 872
MspR9I	CCNGG	8 cut(s)	6, 37, 212, 347, 359, 566, 873, 917
MvaI	CCWGG	2 cut(s)	566, 917
MvnI	CGCG	2 cut(s)	308, 843
MwoI	GCNNNNNNNGC	3 cut(s)	55, 244, 265
NarI	GGCGCC	1 cut(s)	866
NciI	CCSGG	6 cut(s)	6, 37, 212, 347, 359, 873
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	195, 214, 291
NlaIII	CATG	6 cut(s)	232, 247, 259, 268, 832, 902
NlaIV	GGNNCC	4 cut(s)	175, 210, 216, 867
NmeAIII	GCCGAG	2 cut(s)	115, 425
NmuCI	GTSAC	2 cut(s)	202, 284
NspI	RCATGY	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	731
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	4 cut(s)	392, 611, 683, 745
Pfl23II	CGTACG	1 cut(s)	633
PkrI	GCNGC	5 cut(s)	11, 107, 240, 845, 870
PluTI	GGCGCC	1 cut(s)	869
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	564, 915
PspCI	CACGTG	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	2 cut(s)	564, 915
PspLI	CGTACG	1 cut(s)	633
PspN4I	GGNNCC	4 cut(s)	175, 210, 216, 867
PspPI	GGNCC	5 cut(s)	208, 225, 568, 838, 845
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	6 cut(s)	408, 437, 506, 563, 635, 676
RsaNI	GTAC	6 cut(s)	407, 436, 505, 562, 634, 675
RseI	CAYNNNNRTG	1 cut(s)	833
SacII	CCGCGG	1 cut(s)	844
SaqAI	TTAA	2 cut(s)	654, 788
SatI	GCNGC	5 cut(s)	10, 106, 239, 844, 869
Sau3AI	GATC	3 cut(s)	195, 214, 291
Sau96I	GGNCC	5 cut(s)	208, 225, 568, 838, 845
ScrFI	CCNGG	8 cut(s)	6, 37, 212, 347, 359, 566, 873, 917
SduI	GDGCHC	2 cut(s)	35, 51
SfaNI	GCATC	1 cut(s)	325
SfoI	GGCGCC	1 cut(s)	867
Sfr303I	CCGCGG	1 cut(s)	844
SgrBI	CCGCGG	1 cut(s)	844
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	833
Sse9I	AATT	3 cut(s)	423, 643, 906
SspDI	GGCGCC	1 cut(s)	865
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	8 cut(s)	4, 35, 210, 345, 357, 564, 871, 915
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	6 cut(s)	406, 509, 628, 638, 794, 862
TaiI	ACGT	2 cut(s)	253, 291
TaqI	TCGA	1 cut(s)	614
TasI	AATT	3 cut(s)	423, 643, 906
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	4 cut(s)	12, 108, 846, 871
TfiI	GAWTC	4 cut(s)	392, 611, 683, 745
Tru1I	TTAA	2 cut(s)	654, 788
Tru9I	TTAA	2 cut(s)	654, 788
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	2 cut(s)	202, 284
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	2 cut(s)	202, 284
TspDTI	ATGAA	4 cut(s)	120, 687, 758, 887
TspGWI	ACGGA	2 cut(s)	221, 595
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	3 cut(s)	423, 643, 906
XceI	RCATGY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 697
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.