Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203904.1

Orthogroup ID

OG0008276

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 489

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203904.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 278 bp

actcagatctgaagccccacattacagaacttggtgaattcatagctcaggaattagacattaacacttcacaggtcaatttggtgaaattttcttccagtggaaatcattcctttattaaatgggacataacccctgcagattcaaccgaatacatttctaatacaacagctgtggctataatttccaggcttgctgaacatcggttgcagtttcctgtcatgtttggaagttatcagttgattgattggagggttgagcccaaggcaaaacggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

91

Amino Acids

10.35

Weight (kDa)

5.83

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50050
fragaria_vesca	FvH4_1g17040 FvH4_1g17040
malus_domestica	MD02G1180600.v1.1 MD15G1291500.v1.1
prunus_persica	Prupe.6G225700_v2.0.a1 Prupe.6G225700_v2.0.a1 Prupe.6G225700_v2.0.a1 Prupe.6G225700_v2.0.a1
pyrus_communis	pycom02g14650 pycom15g25500
rosa_chinensis	RchiOBHm_Chr2g0107201
rosa_laevigata	RLG00000017559
rosa_multiflora	Rmu_co8203904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136550 Rroxscaffold_7G00198230
rosa_rugosa	Rorug02G0140700 Rorug02G0140800
rosa_samantha	Rh2AG191500 Rh2BG203500 Rh2CG196700 Rh2DG198800
rosa_wichuraiana	Rw2G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	37, 88
AcuI	CTGAAG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	46, 172
AluI	AGCT	2 cut(s)	46, 172
ApoI	RAATTY	2 cut(s)	37, 88
Asp700I	GAANNNNTTC	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	46, 96
BanII	GRGCYC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	137
BglII	AGATCT	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	263
BseMII	CTCAG	2 cut(s)	17, 61
BseNI	ACTGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	6
BspCNI	CTCAG	2 cut(s)	16, 60
BspMAI	CTGCAG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	3, 47
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	194
CspCI	CAANNNNNGTGG	2 cut(s)	155, 190
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	6 cut(s)	15, 46, 172, 178, 192, 261
CviKI_1	RGCY	6 cut(s)	15, 46, 172, 178, 192, 261
DdeI	CTNAG	2 cut(s)	3, 47
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	1 cut(s)	225
FaiI	YATR	4 cut(s)	43, 130, 181, 223
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	225
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	2 cut(s)	46, 96
Hpy188I	TCNGA	2 cut(s)	6, 11
Hpy188III	TCNNGA	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	139, 210
HpyF3I	CTNAG	2 cut(s)	3, 47
Hsp92II	CATG	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	7 cut(s)	34, 58, 111, 149, 174, 201, 230
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	5 cut(s)	37, 52, 78, 88, 182
MnlI	CCTC	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	62, 119
MspA1I	CMGCKG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	6
PvuII	CAGCTG	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	62, 119
Sau3AI	GATC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	3 cut(s)	48, 77, 174
SfcI	CTRYAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	37, 52, 78, 88, 182
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	275
TasI	AATT	5 cut(s)	37, 52, 78, 88, 182
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	62, 119
Tru9I	TTAA	2 cut(s)	62, 119
TscAI	CASTG	1 cut(s)	105
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	105
XapI	RAATTY	2 cut(s)	37, 88
XmnI	GAANNNNTTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.