Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008276

Physical Location & Seq

Genomic Coordinates Reverse (-)

43366457 .. 43367396

Gene Structure 940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTGTTGCCTCTCTACCACTCCACTCCCAATTCCTCTTCTTCTTCTTCAACGTTTAATTCGCGTCGCCACCTTCGGGGATCCGAGTCCCATCACCGCCCCAACGCCGGGATGAGCCTCTACGACGATCTCCTCCGCAACGGGTACTATACGACCAGGCTCGGATCGGAACGCCGCCGCGATGTTCGCTCGATTGTTGATGCGGCAGCACTCGTCACCTATGTGCCTTGCTCCTCTTGTGAACAGATCCGTGGCCCCGATCCCAACTATAATGATATCTGTTTTTCCACCGAAGTAAGTGATGTGTCCCAACTTTCGAGCACCTTTCCACGAGTTGATATGATATTTGGTAATGGGAAAAAGTTTGGCCTATCTCCTGAAAATTTCTTTTTCCGACATTCAAAGGTGCATGGTGCTTATTGTCTAGGGATTTTCCAAAATGGAAAGGATCCAACTACACTTTTGGGAGGAATCCTTGTCCGCAATACTCTTGTAACATACGACCGTGAGCATTCCAAGATTGGTTTTTGGAAAACTAATTGTTCCGAGTTGTGGGAAAGACTTCATGTATCTCCTTCACCTCTACCAATGCCTCCTACTTCGAGGAAAAGAATCCAACGCCGAAACACGACCCTACGTAGCTCCATCGGGTCGCCATATGAACTTTCGGGAGACCTCCAAATTGGACACATAACATTTGATATGTCTTTGAACATCAGCTACTACTCGGATCCGAAGCCCCACATTACGAACTTGGTGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

255

Amino Acids

28.77

Weight (kDa)

9.24

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	60 - 176	1e-06	Eukaryotic aspartyl protease
TAXi_C	PF14541	91 - 176	4.8e-12	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50050
fragaria_vesca	FvH4_1g17040 FvH4_1g17040
malus_domestica	MD02G1180600.v1.1 MD15G1291500.v1.1
prunus_persica	Prupe.6G225700_v2.0.a1 Prupe.6G225700_v2.0.a1 Prupe.6G225700_v2.0.a1 Prupe.6G225700_v2.0.a1
pyrus_communis	pycom02g14650 pycom15g25500
rosa_chinensis	RchiOBHm_Chr2g0107201
rosa_laevigata	RLG00000017559
rosa_multiflora	Rmu_co8203904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136550 Rroxscaffold_7G00198230
rosa_rugosa	Rorug02G0140700 Rorug02G0140800
rosa_samantha	Rh2AG191500 Rh2BG203500 Rh2CG196700 Rh2DG198800
rosa_wichuraiana	Rw2G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	64, 180
AciI	CCGC	6 cut(s)	97, 136, 175, 178, 203, 481
AclI	AACGTT	1 cut(s)	53
AclWI	GGATC	9 cut(s)	75, 88, 172, 241, 254, 443, 456, 725, 738
AcsI	RAATTY	2 cut(s)	382, 760
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	4 cut(s)	76, 107, 108, 552
AgsI	TTSAA	3 cut(s)	51, 402, 712
AjnI	CCWGG	1 cut(s)	155
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	2 cut(s)	642, 720
AluI	AGCT	2 cut(s)	642, 720
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	666
AlwI	GGATC	9 cut(s)	75, 88, 172, 241, 254, 443, 456, 725, 738
AoxI	GGCC	2 cut(s)	253, 367
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	2 cut(s)	382, 760
Asp700I	GAANNNNTTC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	3 cut(s)	86, 208, 570
BamHI	GGATCC	3 cut(s)	80, 448, 730
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	99, 653
BciT130I	CCWGG	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	1 cut(s)	425
BisI	GCNGC	4 cut(s)	175, 178, 204, 207
BlsI	GCNGC	4 cut(s)	176, 179, 205, 208
Bme1390I	CCNGG	2 cut(s)	109, 157
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	4 cut(s)	82, 256, 450, 732
BmrFI	CCNGG	2 cut(s)	109, 157
BmsI	GCATC	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	638
BsaI	GGTCTC	1 cut(s)	666
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 107, 108, 552
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	4 cut(s)	76, 107, 108, 552
BseRI	GAGGAG	2 cut(s)	122, 223
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	2 cut(s)	64, 180
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	2 cut(s)	255, 369
BsiEI	CGRYCG	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	73, 292
BslI	CCNNNNNNNGG	4 cut(s)	76, 107, 108, 552
BsmAI	GTCTC	1 cut(s)	666
BsmFI	GGGAC	2 cut(s)	73, 292
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	255, 369
Bso31I	GGTCTC	1 cut(s)	666
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	7 cut(s)	80, 127, 164, 246, 259, 448, 730
BspACI	CCGC	6 cut(s)	97, 136, 175, 178, 203, 481
BspANI	GGCC	2 cut(s)	255, 369
BspFNI	CGCG	2 cut(s)	64, 180
BspLI	GGNNCC	4 cut(s)	82, 256, 450, 732
BspPI	GGATC	9 cut(s)	75, 88, 172, 241, 254, 443, 456, 725, 738
BspTNI	GGTCTC	1 cut(s)	666
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	7 cut(s)	80, 127, 164, 246, 259, 448, 730
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	638
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	2 cut(s)	64, 180
BstKTI	GATC	7 cut(s)	83, 130, 167, 249, 262, 451, 733
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	7 cut(s)	80, 127, 164, 246, 259, 448, 730
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	107, 155
BstSNI	TACGTA	1 cut(s)	638
BstUI	CGCG	2 cut(s)	64, 180
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	4 cut(s)	80, 246, 448, 730
BstYI	RGATCY	4 cut(s)	80, 246, 448, 730
BsuRI	GGCC	2 cut(s)	255, 369
BtgI	CCRYGG	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	2 cut(s)	410, 566
CviJI	RGCY	7 cut(s)	117, 160, 255, 369, 642, 720, 739
CviKI_1	RGCY	7 cut(s)	117, 160, 255, 369, 642, 720, 739
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	7 cut(s)	82, 129, 166, 248, 261, 450, 732
DpnII	GATC	7 cut(s)	80, 127, 164, 246, 259, 448, 730
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	666
Eco32I	GATATC	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	760
EcoRII	CCWGG	1 cut(s)	155
EcoRV	GATATC	1 cut(s)	277
FaeI	CATG	2 cut(s)	413, 569
FaqI	GGGAC	2 cut(s)	73, 292
FatI	CATG	2 cut(s)	409, 565
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	175, 178, 204, 207
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	4 cut(s)	175, 178, 204, 207
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	4 cut(s)	175, 178, 204, 207
HaeIII	GGCC	2 cut(s)	255, 369
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	413, 569
HinfI	GANTC	3 cut(s)	86, 471, 612
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	3 cut(s)	86, 208, 570
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	7 cut(s)	85, 164, 169, 395, 547, 730, 735
Hpy188III	TCNNGA	2 cut(s)	377, 669
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	2 cut(s)	69, 128
HpyAV	CCTTC	2 cut(s)	83, 585
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	2 cut(s)	53, 637
HpyCH4V	TGCA	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpySE526I	ACGT	2 cut(s)	53, 637
Hsp92II	CATG	2 cut(s)	413, 569
Kzo9I	GATC	7 cut(s)	80, 127, 164, 246, 259, 448, 730
LmnI	GCTCC	2 cut(s)	236, 647
LpnPI	CCDG	4 cut(s)	121, 142, 169, 390
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	2 cut(s)	53, 637
MaeIII	GTNAC	2 cut(s)	214, 493
MalI	GATC	7 cut(s)	82, 129, 166, 248, 261, 450, 732
MboI	GATC	7 cut(s)	80, 127, 164, 246, 259, 448, 730
MboII	GAAGA	4 cut(s)	30, 33, 36, 39
MflI	RGATCY	4 cut(s)	80, 246, 448, 730
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	6 cut(s)	31, 58, 382, 538, 681, 760
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	3 cut(s)	418, 476, 640
MroXI	GAANNNNTTC	1 cut(s)	561
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	109, 157
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	2 cut(s)	64, 180
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	109
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	7 cut(s)	80, 127, 164, 246, 259, 448, 730
NlaIII	CATG	2 cut(s)	413, 569
NlaIV	GGNNCC	4 cut(s)	82, 256, 450, 732
NmuCI	GTSAC	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	221
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	471, 612
PkrI	GCNGC	4 cut(s)	176, 179, 205, 208
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	638
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	4 cut(s)	82, 256, 450, 732
PspPI	GGNCC	1 cut(s)	254
PsrI	GAACNNNNNNTAC	2 cut(s)	704, 736
PsuI	RGATCY	4 cut(s)	80, 246, 448, 730
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	4 cut(s)	175, 178, 204, 207
Sau3AI	GATC	7 cut(s)	80, 127, 164, 246, 259, 448, 730
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	109, 157
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	221
SnaBI	TACGTA	1 cut(s)	638
Sse9I	AATT	6 cut(s)	31, 58, 382, 538, 681, 760
SsiI	CCGC	6 cut(s)	97, 136, 175, 178, 203, 481
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	107, 155
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	2 cut(s)	56, 640
TaqI	TCGA	3 cut(s)	191, 317, 602
TasI	AATT	6 cut(s)	31, 58, 382, 538, 681, 760
TauI	GCSGC	3 cut(s)	177, 180, 206
TfiI	GAWTC	2 cut(s)	471, 612
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	554, 675, 753
TspGWI	ACGGA	1 cut(s)	239
XapI	RAATTY	2 cut(s)	382, 760
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.