Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008276

Physical Location & Seq

Genomic Coordinates Reverse (-)

12392041 .. 12393302

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0140700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGGATTACCTACCCGAGGACGTGATAGTTCGAATCATGCAGAGGTTGCCGATCAAATCCCTAATCCGCTTCACCTGCGTTTCGAAACGCTGGCGTTTCATCATATTATCCGACCCAGAATTCGCCAGGTCCCAATTCCAAATAGCTTCTCACCACCAAACCCTCTGTCACAGGCTCCTCATCTGCACCGTATCTATATCTGAATCGTTCAATTCGGTAGACGAGTTCAACTCACTAGACTTGGACACGCCGCCGCCGTCGCCGTTGGGAGAAAATTCTTTGGTGCTGAGAAAGGTTAGGTGCCCATTGACGCAACATCCAGTGACGATACTGTGCTCCTGCAATGGCTTGATATTGGCAGCACTTTATGATCAAGAAAACAAAATGTTTATCTGGAACCCATCAACTCAATTCTTCAAAAAACTTCCTGACCCAGCTGATCTTCCGTCAGAATTACTCTGTTTTGGTTTTGGCTATTTGTTGGCCACTGACGACTATAAAGTTATTGCCAACTTCAAAGTCAGTGATGATTATTATGTTGATGAGGTGGAGGAGGAGAAAAAGGGCAAGGAAATGCACATCTTTTCATCAAAAGCCAACACTTGGAAAAGGACTGAAGCCCCTCTCGACTTCGACTTTGATTTTGAGGGGACTCTGTCAAATGAGGTACTTCATTGGCCGGACAACTTTGGCATCTTTGCTTTTGATCTAGCAAGGGAGGAGTTCCGAAGAATGCCGCTGCCTATTCCAGGTGGTGAGGGTGAGTTTAGGTATGTCAGGGCTTTCGGAGACTGTCTGTGTGCGTTTGATTTTGCAAATCTTGATACTGCTAGCTCCATTGATTTGTGGGTGATGAAAAAATATGGCGTGGCTGACTCATGGACGAAGCTCTTTAACTTAAAGGTTTCCGATCAGCCTGAGAAGATACCTTATTGTTTGCCAGTCTCGGTAATGGAAACTAGTACATTGCTGCACAAATTGATTAGATTCCGTGATGAGCAGTTTATGAATTGGATAAGGATTGATCATACGAAACAGAAGCCTGAAATTCATGTGTTGAGCAGGTTTACAGATATCATCGAAACTGTTCAATATGAAGAGACTATACTTTGGTTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

374

Amino Acids

43.48

Weight (kDa)

5.17

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 44	5.8e-08	F-box-like
F-box	PF00646	5 - 40	5.1e-10	F-box domain
FBA_3	PF08268	94 - 297	1e-08	F-box associated beta propeller domain
FBA_1	PF07734	106 - 322	3e-19	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	106 - 252	8.5e-07	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50050
fragaria_vesca	FvH4_1g17040 FvH4_1g17040
malus_domestica	MD02G1180600.v1.1 MD15G1291500.v1.1
prunus_persica	Prupe.6G225700_v2.0.a1 Prupe.6G225700_v2.0.a1 Prupe.6G225700_v2.0.a1 Prupe.6G225700_v2.0.a1
pyrus_communis	pycom02g14650 pycom15g25500
rosa_chinensis	RchiOBHm_Chr2g0107201
rosa_laevigata	RLG00000017559
rosa_multiflora	Rmu_co8203904.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136550 Rroxscaffold_7G00198230
rosa_rugosa	Rorug02G0140700 Rorug02G0140800
rosa_samantha	Rh2AG191500 Rh2BG203500 Rh2CG196700 Rh2DG198800
rosa_wichuraiana	Rw2G015140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	2 cut(s)	86, 1056
AccB1I	GGYRCC	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	5 cut(s)	5, 70, 254, 257, 740
AcoI	YGGCCR	2 cut(s)	486, 680
AcsI	RAATTY	3 cut(s)	122, 277, 1050
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	2 cut(s)	672, 967
AfiI	CCNNNNNNNGG	3 cut(s)	19, 606, 752
AgsI	TTSAA	5 cut(s)	214, 232, 421, 520, 1094
AhlI	ACTAGT	1 cut(s)	962
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	128, 751
AluBI	AGCT	4 cut(s)	149, 440, 837, 892
AluI	AGCT	4 cut(s)	149, 440, 837, 892
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	3 cut(s)	786, 952, 1097
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	486, 680
ApeKI	GCWGC	3 cut(s)	362, 742, 973
ApoI	RAATTY	3 cut(s)	122, 277, 1050
ArsI	GACNNNNNNTTYG	8 cut(s)	107, 139, 154, 186, 623, 629, 655, 661
Asp700I	GAANNNNTTC	1 cut(s)	1089
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	5 cut(s)	67, 146, 770, 776, 865
AsuII	TTCGAA	2 cut(s)	34, 86
AsuNHI	GCTAGC	1 cut(s)	833
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	303
BarI	GAAGNNNNNNTAC	2 cut(s)	1092, 1124
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	3 cut(s)	374, 729, 960
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	2 cut(s)	244, 250
BciT130I	CCWGG	2 cut(s)	130, 753
BclI	TGATCA	2 cut(s)	373, 1027
BcoDI	GTCTC	3 cut(s)	786, 952, 1097
BcuI	ACTAGT	1 cut(s)	962
BfaI	CTAG	4 cut(s)	239, 713, 834, 963
BfuAI	ACCTGC	2 cut(s)	86, 1056
BisI	GCNGC	6 cut(s)	254, 257, 363, 740, 743, 974
BlsI	GCNGC	6 cut(s)	255, 258, 364, 741, 744, 975
Bme1390I	CCNGG	2 cut(s)	130, 753
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	4 cut(s)	134, 179, 305, 401
BmrFI	CCNGG	2 cut(s)	130, 753
BmsI	GCATC	1 cut(s)	705
BmtI	GCTAGC	1 cut(s)	837
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
Bpu14I	TTCGAA	2 cut(s)	34, 86
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 606, 752
Bse1I	ACTGG	2 cut(s)	323, 944
Bse3DI	GCAATG	2 cut(s)	352, 968
BseBI	CCWGG	2 cut(s)	130, 753
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	3 cut(s)	19, 606, 752
BseMI	GCAATG	2 cut(s)	352, 968
BseMII	CTCAG	2 cut(s)	281, 912
BseNI	ACTGG	2 cut(s)	323, 944
BseRI	GAGGAG	4 cut(s)	170, 569, 572, 737
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	374, 729, 960
BseYI	CCCAGC	1 cut(s)	436
BsgI	GTGCAG	2 cut(s)	172, 959
BshFI	GGCC	2 cut(s)	488, 682
BshNI	GGYRCC	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	2 cut(s)	118, 667
BslI	CCNNNNNNNGG	3 cut(s)	19, 606, 752
BsmAI	GTCTC	3 cut(s)	786, 952, 1097
BsmFI	GGGAC	2 cut(s)	118, 667
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	2 cut(s)	488, 682
BsoBI	CYCGRG	1 cut(s)	17
Bsp119I	TTCGAA	2 cut(s)	34, 86
Bsp1286I	GDGCHC	2 cut(s)	308, 341
Bsp143I	GATC	6 cut(s)	54, 373, 442, 709, 913, 1027
BspACI	CCGC	5 cut(s)	5, 70, 254, 257, 740
BspANI	GGCC	2 cut(s)	488, 682
BspCNI	CTCAG	2 cut(s)	282, 913
BspLI	GGNNCC	4 cut(s)	134, 179, 305, 401
BspMI	ACCTGC	2 cut(s)	86, 1056
BspOI	GCTAGC	1 cut(s)	837
BspT104I	TTCGAA	2 cut(s)	34, 86
BspT107I	GGYRCC	1 cut(s)	303
BsrDI	GCAATG	2 cut(s)	352, 968
BsrI	ACTGG	2 cut(s)	323, 944
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	6 cut(s)	54, 373, 442, 709, 913, 1027
Bst2UI	CCWGG	2 cut(s)	130, 753
Bst4CI	ACNGT	4 cut(s)	193, 336, 797, 1090
Bst6I	CTCTTC	1 cut(s)	1095
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstBI	TTCGAA	2 cut(s)	34, 86
BstC8I	GCNNGC	2 cut(s)	95, 835
BstDEI	CTNAG	2 cut(s)	290, 921
BstENI	CCTNNNNNAGG	2 cut(s)	17, 750
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	6 cut(s)	57, 376, 445, 712, 916, 1030
BstMAI	GTCTC	3 cut(s)	786, 952, 1097
BstMBI	GATC	6 cut(s)	54, 373, 442, 709, 913, 1027
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 78, 262
BstNI	CCWGG	2 cut(s)	130, 753
BstSCI	CCNGG	2 cut(s)	128, 751
BstSLI	GKGCMC	1 cut(s)	308
BstV1I	GCAGC	3 cut(s)	374, 729, 960
BsuRI	GGCC	2 cut(s)	488, 682
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	330, 489, 532
BveI	ACCTGC	2 cut(s)	86, 1056
Cac8I	GCNNGC	2 cut(s)	95, 835
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	671, 966
CviAII	CATG	3 cut(s)	40, 882, 1055
CviQI	GTAC	2 cut(s)	671, 966
DdeI	CTNAG	2 cut(s)	290, 921
DpnI	GATC	6 cut(s)	56, 375, 444, 711, 915, 1029
DpnII	GATC	6 cut(s)	54, 373, 442, 709, 913, 1027
EaeI	YGGCCR	2 cut(s)	486, 680
Eam1104I	CTCTTC	1 cut(s)	1095
EarI	CTCTTC	1 cut(s)	1095
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	1078
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	17
EcoNI	CCTNNNNNAGG	2 cut(s)	17, 750
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	128, 751
EcoRV	GATATC	1 cut(s)	1078
FaeI	CATG	3 cut(s)	43, 885, 1058
FaqI	GGGAC	2 cut(s)	118, 667
FatI	CATG	3 cut(s)	39, 881, 1054
FbaI	TGATCA	2 cut(s)	373, 1027
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	6 cut(s)	254, 257, 363, 740, 743, 974
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	6 cut(s)	254, 257, 363, 740, 743, 974
FspBI	CTAG	4 cut(s)	239, 713, 834, 963
GluI	GCNGC	6 cut(s)	254, 257, 363, 740, 743, 974
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	488, 682
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	1 cut(s)	322
Hin1II	CATG	3 cut(s)	43, 885, 1058
HinfI	GANTC	5 cut(s)	36, 206, 655, 878, 990
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	5 cut(s)	67, 146, 770, 776, 865
Hpy166II	GTNNAC	2 cut(s)	223, 1071
Hpy188I	TCNGA	6 cut(s)	115, 205, 454, 731, 791, 913
Hpy188III	TCNNGA	5 cut(s)	377, 397, 431, 629, 824
Hpy8I	GTNNAC	2 cut(s)	223, 1071
Hpy99I	CGWCG	1 cut(s)	265
HpyCH4III	ACNGT	4 cut(s)	193, 336, 797, 1090
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	6 cut(s)	43, 189, 345, 580, 818, 976
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 78, 262
HpyF3I	CTNAG	2 cut(s)	290, 921
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	43, 885, 1058
Ksp22I	TGATCA	2 cut(s)	373, 1027
Kzo9I	GATC	6 cut(s)	54, 373, 442, 709, 913, 1027
LmnI	GCTCC	3 cut(s)	183, 344, 842
Lsp1109I	GCAGC	3 cut(s)	374, 729, 960
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	4 cut(s)	239, 713, 834, 963
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	170, 325
MalI	GATC	6 cut(s)	56, 375, 444, 711, 915, 1029
MboI	GATC	6 cut(s)	54, 373, 442, 709, 913, 1027
MboII	GAAGA	5 cut(s)	409, 437, 744, 937, 1112
MhlI	GDGCHC	2 cut(s)	308, 341
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	9 cut(s)	122, 137, 214, 277, 413, 455, 980, 1012, 1050
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	2 cut(s)	649, 872
MmeI	TCCRAC	1 cut(s)	138
Mox20I	TGGCCA	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	1089
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	2 cut(s)	897, 902
Msp20I	TGGCCA	1 cut(s)	488
MspA1I	CMGCKG	2 cut(s)	440, 742
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	2 cut(s)	130, 753
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	2 cut(s)	130, 753
MwoI	GCNNNNNNNGC	3 cut(s)	49, 78, 262
NdeII	GATC	6 cut(s)	54, 373, 442, 709, 913, 1027
NheI	GCTAGC	1 cut(s)	833
NlaIII	CATG	3 cut(s)	43, 885, 1058
NlaIV	GGNNCC	4 cut(s)	134, 179, 305, 401
NmuCI	GTSAC	2 cut(s)	170, 325
NspV	TTCGAA	2 cut(s)	34, 86
PaqCI	CACCTGC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PctI	GAATGC	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	1089
PfeI	GAWTC	3 cut(s)	36, 206, 990
PflFI	GACNNNGTC	1 cut(s)	658
PflMI	CCANNNNNTGG	1 cut(s)	606
PkrI	GCNGC	6 cut(s)	255, 258, 364, 741, 744, 975
PleI	GAGTC	2 cut(s)	649, 872
PpsI	GAGTC	2 cut(s)	649, 872
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	128, 751
PspFI	CCCAGC	1 cut(s)	436
PspGI	CCWGG	2 cut(s)	128, 751
PspN4I	GGNNCC	4 cut(s)	134, 179, 305, 401
PspPI	GGNCC	1 cut(s)	132
PspPPI	RGGWCCY	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	672, 967
RsaNI	GTAC	2 cut(s)	671, 966
SaqAI	TTAA	2 cut(s)	897, 902
SatI	GCNGC	6 cut(s)	254, 257, 363, 740, 743, 974
Sau3AI	GATC	6 cut(s)	54, 373, 442, 709, 913, 1027
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	2 cut(s)	649, 872
ScrFI	CCNGG	2 cut(s)	130, 753
SduI	GDGCHC	2 cut(s)	308, 341
SfaNI	GCATC	1 cut(s)	705
SfuI	TTCGAA	2 cut(s)	34, 86
SinI	GGWCC	1 cut(s)	132
SpeI	ACTAGT	1 cut(s)	962
Sse9I	AATT	9 cut(s)	122, 137, 214, 277, 413, 455, 980, 1012, 1050
SsiI	CCGC	5 cut(s)	5, 70, 254, 257, 740
SspMI	CTAG	4 cut(s)	239, 713, 834, 963
StyD4I	CCNGG	2 cut(s)	128, 751
TaaI	ACNGT	4 cut(s)	193, 336, 797, 1090
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	5 cut(s)	34, 86, 630, 636, 1083
TasI	AATT	9 cut(s)	122, 137, 214, 277, 413, 455, 980, 1012, 1050
TatI	WGTACW	1 cut(s)	965
TauI	GCSGC	3 cut(s)	256, 259, 742
TfiI	GAWTC	3 cut(s)	36, 206, 990
Tru1I	TTAA	2 cut(s)	897, 902
Tru9I	TTAA	2 cut(s)	897, 902
TscAI	CASTG	3 cut(s)	330, 496, 532
TseFI	GTSAC	2 cut(s)	170, 325
TseI	GCWGC	3 cut(s)	362, 742, 973
Tsp45I	GTSAC	2 cut(s)	170, 325
TspDTI	ATGAA	7 cut(s)	91, 579, 665, 872, 1025, 1043, 1113
TspGWI	ACGGA	2 cut(s)	438, 983
TspRI	CASTG	3 cut(s)	330, 496, 532
Tth111I	GACNNNGTC	1 cut(s)	658
Van91I	CCANNNNNTGG	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	132
XagI	CCTNNNNNAGG	2 cut(s)	17, 750
XapI	RAATTY	3 cut(s)	122, 277, 1050
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	1089
XspI	CTAG	4 cut(s)	239, 713, 834, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.