Rmu_co8206138.1_g000001

GTPase activator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8206138.1
OG0009686
Physical Location & Seq
Forward (+)
1 .. 566
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8206138.1_g000001.1.cds

Sequence Viewer

Length: 275 bp
gtcatgggacagatccagagtggaatgagcaacttcttttcaccatagctgattcagttgaagatgtcaggcttcgggtccatgacggggattacgttactgatgaagaagttggacattcctctattccattaaacaccctacttgagtcggggtacgaagcgcaaatcgaggcccatccatatgatgtatccaggggaggtgacacctatggagaaattatcgttgccctccattttcatccagagcccggccatgataaagatcaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 C2 EF-hand_8

Protein Analysis

90

Amino Acids

10.1

Weight (kDa)

4.33

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 7
AcoI YGGCCR 1 cut(s) 252
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 87, 250
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
AlwI GGATC 1 cut(s) 7
AoxI GGCC 2 cut(s) 173, 252
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 78, 174
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 33, 214
AvaII GGWCC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 251
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 195
BciVI GTATCC 1 cut(s) 201
BcnI CCSGG 1 cut(s) 251
BfuI GTATCC 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 195, 251
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 78, 174
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 2 cut(s) 195, 251
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 250
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 177, 240
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 2 cut(s) 87, 250
BshFI GGCC 2 cut(s) 175, 254
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 87, 250
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 2 cut(s) 175, 254
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 2 cut(s) 12, 264
BspANI GGCC 2 cut(s) 175, 254
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 2 cut(s) 12, 264
Bst2UI CCWGG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 177, 240
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 2 cut(s) 15, 267
BstMBI GATC 2 cut(s) 12, 264
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 193, 249
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 175, 254
BtsCI GGATG 2 cut(s) 177, 240
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 78, 174
Csp6I GTAC 1 cut(s) 156
CviAII CATG 3 cut(s) 4, 82, 256
CviJI RGCY 5 cut(s) 49, 72, 175, 249, 254
CviKI_1 RGCY 5 cut(s) 49, 72, 175, 249, 254
CviQI GTAC 1 cut(s) 156
DpnI GATC 2 cut(s) 14, 266
DpnII GATC 2 cut(s) 12, 264
EaeI YGGCCR 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 3 cut(s) 7, 85, 259
FaiI YATR 7 cut(s) 5, 46, 83, 183, 185, 212, 257
FaqI GGGAC 1 cut(s) 21
FatI CATG 3 cut(s) 3, 81, 255
FauNDI CATATG 1 cut(s) 183
FokI GGATG 2 cut(s) 164, 227
FriOI GRGCYC 1 cut(s) 251
GlaI GCGC 1 cut(s) 164
HaeIII GGCC 2 cut(s) 175, 254
HapII CCGG 1 cut(s) 251
HhaI GCGC 1 cut(s) 165
Hin1II CATG 3 cut(s) 7, 85, 259
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 2 cut(s) 52, 148
HpaII CCGG 1 cut(s) 251
HphI GGTGA 2 cut(s) 33, 214
Hpy188III TCNNGA 3 cut(s) 16, 244, 268
HpyCH4IV ACGT 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 3 cut(s) 7, 85, 259
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 12, 264
LpnPI CCDG 6 cut(s) 29, 54, 180, 207, 257, 264
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 96, 202
MalI GATC 2 cut(s) 14, 266
MboI GATC 2 cut(s) 12, 264
MboII GAAGA 2 cut(s) 73, 118
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 4 cut(s) 132, 165, 193, 241
MseI TTAA 1 cut(s) 133
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 195, 251
MvaI CCWGG 1 cut(s) 195
NciI CCSGG 1 cut(s) 251
NdeI CATATG 1 cut(s) 183
NdeII GATC 2 cut(s) 12, 264
NlaIII CATG 3 cut(s) 7, 85, 259
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 1 cut(s) 52
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 78, 174
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 133
Sau3AI GATC 2 cut(s) 12, 264
Sau96I GGNCC 2 cut(s) 78, 174
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 195, 251
SduI GDGCHC 1 cut(s) 251
SetI ASST 4 cut(s) 51, 98, 204, 211
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 193, 249
TaiI ACGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 170
TasI AATT 1 cut(s) 218
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 1 cut(s) 133
Tru9I TTAA 1 cut(s) 133
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 119, 229
VpaK11BI GGWCC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.