Rh7DG175100

GTPase activator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0009686
Physical Location & Seq
Reverse (-)
16043210 .. 16057070
13861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG175100.1

Sequence Viewer

Length: 456 bp
ATGGCGCCTCGAGGGGTACTTGACGTTTCAGTTATTGGTGGAAGGAATCTCTCAAACCCGGACAAAGAGGGTAAAATAATGTGCATCGTCAACTACAAAAATCAAGAGCATAGGACGGACGCCATATATTGTGATGGGACTGATCCAGAGTGGAATGAGCAACTTCTGTTCACCATAGCTGGTTCAGTTGAGGATCTCAAGATTCGGGTCCATGACGGGGATTACGTTACTGATGAAGAAGTTGGACATTGCTCTATTCCAATAGACAGTCTAGTTGAGACAGGGTACAAAGCGCAAACGGACGCGTCTCCATATGAAGTATGGAGGGGAGATGAAGTCTATGGAGAACTTACCGTTGCCCTCTCTTTTCATCCAGAGGTGAAGAAGGTTAAGAGGGAATTAGAGTTTGAGAAGGGTTCTACAGGGGCTGGGAATTTGGGAAGATTTGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 C2 EF-hand_8

Protein Analysis

151

Amino Acids

16.78

Weight (kDa)

4.74

Isoelectric Point (pI)

14.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 5 - 93 1.5e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 305
AclWI GGATC 2 cut(s) 137, 201
AcsI RAATTY 1 cut(s) 433
AcyI GRCGYC 2 cut(s) 5, 120
AfaI GTAC 2 cut(s) 18, 287
AfiI CCNNNNNNNGG 1 cut(s) 217
AflIII ACRYGT 1 cut(s) 303
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 272, 312
AlwI GGATC 2 cut(s) 137, 201
AlwNI CAGNNNCTG 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 9
ApoI RAATTY 1 cut(s) 433
AspLEI GCGC 2 cut(s) 7, 295
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 163, 391
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 272, 312
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 6, 209
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 59
BsaHI GRCGYC 2 cut(s) 5, 120
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 247
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 247
BseYI CCCAGC 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 2 cut(s) 272, 312
BsmBI CGTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 2 cut(s) 142, 193
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 6, 209
BspPI GGATC 2 cut(s) 137, 201
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 247
BssMI GATC 2 cut(s) 142, 193
BssNI GRCGYC 2 cut(s) 5, 120
Bst4CI ACNGT 2 cut(s) 269, 355
BstACI GRCGYC 2 cut(s) 5, 120
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 295
BstKTI GATC 2 cut(s) 145, 196
BstMAI GTCTC 2 cut(s) 272, 312
BstMBI GATC 2 cut(s) 142, 193
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 1 cut(s) 370
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 2 cut(s) 7, 295
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 3 cut(s) 128, 294, 311
Csp6I GTAC 2 cut(s) 17, 286
CviAII CATG 1 cut(s) 212
CviJI RGCY 2 cut(s) 179, 428
CviKI_1 RGCY 2 cut(s) 179, 428
CviQI GTAC 2 cut(s) 17, 286
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 144, 195
DpnII GATC 2 cut(s) 142, 193
Eco47I GGWCC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 1 cut(s) 215
FaiI YATR 9 cut(s) 111, 125, 127, 176, 213, 313, 315, 322, 342
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 211
FauNDI CATATG 1 cut(s) 313
FokI GGATG 1 cut(s) 357
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 6, 294
GsaI CCCAGC 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 59
HgaI GACGC 3 cut(s) 128, 294, 311
HhaI GCGC 2 cut(s) 7, 295
Hin1I GRCGYC 2 cut(s) 5, 120
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 2 cut(s) 5, 293
HinP1I GCGC 2 cut(s) 5, 293
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 46, 202
HpaII CCGG 1 cut(s) 59
HphI GGTGA 2 cut(s) 163, 391
Hpy166II GTNNAC 2 cut(s) 91, 171
Hpy188I TCNGA 1 cut(s) 455
Hpy188III TCNNGA 4 cut(s) 104, 146, 199, 374
Hpy8I GTNNAC 2 cut(s) 91, 171
HpyAV CCTTC 3 cut(s) 36, 379, 406
HpyCH4III ACNGT 2 cut(s) 269, 355
HpyCH4IV ACGT 2 cut(s) 24, 225
HpyCH4V TGCA 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 24, 225
Hsp92I GRCGYC 2 cut(s) 5, 120
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 2 cut(s) 5, 293
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 142, 193
LpnPI CCDG 7 cut(s) 72, 159, 165, 267, 387, 408, 414
LweI GCATC 1 cut(s) 93
MaeI CTAG 1 cut(s) 272
MaeII ACGT 2 cut(s) 24, 225
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 144, 195
MboI GATC 2 cut(s) 142, 193
MboII GAAGA 3 cut(s) 248, 394, 453
MflI RGATCY 1 cut(s) 193
MluCI AATT 2 cut(s) 398, 433
MluI ACGCGT 1 cut(s) 303
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 8 cut(s) 5, 18, 61, 184, 318, 370, 371, 387
MseI TTAA 1 cut(s) 390
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 305
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 59
NdeI CATATG 1 cut(s) 313
NdeII GATC 2 cut(s) 142, 193
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 2 cut(s) 6, 209
PaeR7I CTCGAG 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 46, 202
PluTI GGCGCC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 6, 209
PspPI GGNCC 1 cut(s) 208
PspXI VCTCGAGB 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 18, 287
RsaNI GTAC 2 cut(s) 17, 286
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 2 cut(s) 142, 193
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 59
SetI ASST 5 cut(s) 27, 181, 228, 381, 390
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 420
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 2 cut(s) 9, 197
SmoI CTYRAG 2 cut(s) 9, 197
Sse9I AATT 2 cut(s) 398, 433
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 269, 355
TaiI ACGT 2 cut(s) 27, 228
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 398, 433
TfiI GAWTC 2 cut(s) 46, 202
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TspDTI ATGAA 4 cut(s) 249, 330, 348, 359
TspGWI ACGGA 2 cut(s) 131, 314
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 9
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.