Rh7CG182300

GTPase activator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009686
Physical Location & Seq
Reverse (-)
15794013 .. 15795746
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG182300.1

Sequence Viewer

Length: 456 bp
ATGGCGCCTCGAGGGGTACTTGACGTTTCAATTATTGGTGGAAGGAATCTCTCAAACCCGGACAAAGAGGGTAAAATAATGTGCATCGTCAACTACAAAAATCAAGAGCATAGGACGGACGCCATATATTGTGATGGGACTGATCCAGAGTGGAATGAGCAACTTCTGTTCACCATAGCTGGTTCAGTTGAGGATCTCAAGATTCGGGTCCATGACGGGGATTACGTTACTGATGAAGAAGTTGGACATTGCTCTATTCCAATAGACAGTCTAGTTGAGACAGGGTACAAAGCGCAAACAGACGCGTCTCCATATGAAGTATGGAGGGGAGATGAAGTCTATGGAGAACTTACCGTTGCCCTCTCTTTTCATCCAGAGATCGAGTATCAAACCCTACGTCCGAGAGAGAACTTTTCTCTCTCGTCTTGCTGTAGCCGTCAGGCTGTTTCCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 C2 EF-hand_8

Protein Analysis

151

Amino Acids

16.92

Weight (kDa)

4.55

Isoelectric Point (pI)

26.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 5 - 93 2.2e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 305
AclWI GGATC 2 cut(s) 137, 201
AcyI GRCGYC 2 cut(s) 5, 120
AfaI GTAC 2 cut(s) 18, 287
AfiI CCNNNNNNNGG 1 cut(s) 217
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 272, 312
AlwI GGATC 2 cut(s) 137, 201
Ama87I CYCGRG 1 cut(s) 9
ArsI GACNNNNNNTTYG 2 cut(s) 382, 414
AspLEI GCGC 2 cut(s) 7, 295
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 420
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 272, 312
BfaI CTAG 2 cut(s) 272, 454
BfmI CTRYAG 1 cut(s) 430
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 6, 209
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 59
BsaHI GRCGYC 2 cut(s) 5, 120
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 247
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 2 cut(s) 272, 312
BsmBI CGTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 3 cut(s) 142, 193, 378
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 6, 209
BspPI GGATC 2 cut(s) 137, 201
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 247
BssMI GATC 3 cut(s) 142, 193, 378
BssNI GRCGYC 2 cut(s) 5, 120
Bst4CI ACNGT 2 cut(s) 269, 355
BstACI GRCGYC 2 cut(s) 5, 120
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 295
BstKTI GATC 3 cut(s) 145, 196, 381
BstMAI GTCTC 2 cut(s) 272, 312
BstMBI GATC 3 cut(s) 142, 193, 378
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 430
BstUI CGCG 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 1 cut(s) 370
CfoI GCGC 2 cut(s) 7, 295
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 3 cut(s) 128, 294, 311
Csp6I GTAC 2 cut(s) 17, 286
CviAII CATG 1 cut(s) 212
CviJI RGCY 3 cut(s) 179, 435, 443
CviKI_1 RGCY 3 cut(s) 179, 435, 443
CviQI GTAC 2 cut(s) 17, 286
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 144, 195, 380
DpnII GATC 3 cut(s) 142, 193, 378
Eco47I GGWCC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 1 cut(s) 215
FaiI YATR 9 cut(s) 111, 125, 127, 176, 213, 313, 315, 322, 342
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 211
FauNDI CATATG 1 cut(s) 313
FokI GGATG 1 cut(s) 357
FspBI CTAG 2 cut(s) 272, 454
GlaI GCGC 2 cut(s) 6, 294
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 59
HgaI GACGC 3 cut(s) 128, 294, 311
HhaI GCGC 2 cut(s) 7, 295
Hin1I GRCGYC 2 cut(s) 5, 120
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 2 cut(s) 5, 293
HinP1I GCGC 2 cut(s) 5, 293
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 46, 202
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 91, 171
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 4 cut(s) 104, 146, 199, 374
Hpy8I GTNNAC 2 cut(s) 91, 171
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 2 cut(s) 269, 355
HpyCH4IV ACGT 3 cut(s) 24, 225, 397
HpyCH4V TGCA 1 cut(s) 84
HpySE526I ACGT 3 cut(s) 24, 225, 397
Hsp92I GRCGYC 2 cut(s) 5, 120
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 2 cut(s) 5, 293
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 142, 193, 378
LpnPI CCDG 6 cut(s) 72, 159, 165, 267, 387, 425
LweI GCATC 1 cut(s) 93
MaeI CTAG 2 cut(s) 272, 454
MaeII ACGT 3 cut(s) 24, 225, 397
MaeIII GTNAC 1 cut(s) 226
MalI GATC 3 cut(s) 144, 195, 380
MboI GATC 3 cut(s) 142, 193, 378
MboII GAAGA 1 cut(s) 248
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 30
MluI ACGCGT 1 cut(s) 303
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 6 cut(s) 5, 18, 61, 184, 318, 371
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 305
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 59
NdeI CATATG 1 cut(s) 313
NdeII GATC 3 cut(s) 142, 193, 378
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 2 cut(s) 6, 209
PaeR7I CTCGAG 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 46, 202
PluTI GGCGCC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 6, 209
PspPI GGNCC 1 cut(s) 208
PspXI VCTCGAGB 1 cut(s) 9
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 18, 287
RsaNI GTAC 2 cut(s) 17, 286
Sau3AI GATC 3 cut(s) 142, 193, 378
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 59
SetI ASST 4 cut(s) 27, 181, 228, 400
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 430
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 2 cut(s) 9, 197
SmoI CTYRAG 2 cut(s) 9, 197
Sse9I AATT 1 cut(s) 30
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 272, 454
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 269, 355
TaiI ACGT 3 cut(s) 27, 228, 400
TaqI TCGA 2 cut(s) 10, 381
TasI AATT 1 cut(s) 30
TfiI GAWTC 2 cut(s) 46, 202
TspDTI ATGAA 4 cut(s) 249, 330, 348, 359
TspGWI ACGGA 2 cut(s) 131, 439
VpaK11BI GGWCC 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 9
XspI CTAG 2 cut(s) 272, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.