Rh7AG172700

GTPase activator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009686
Physical Location & Seq
Reverse (-)
14973251 .. 14988728
15478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG172700.1

Sequence Viewer

Length: 324 bp
ATGGCGCCTCGAGGGGTACTTGACGTTTCAGTTATTGGTGGAAGGAATCTCTCAAACCCGGACAAAGAGGGTAAAATAATGTGCATCGTCAACTACAAAAATCAAGAGCATAGGACGGACGCCATATATTGTGATGGGACTGATCCAGAGTGGAATGAGCAACTTCTGTTCACCATAGCTGGTTCAGTTGAGGATCTCAAGATTCGGGTCCATGACGGGGATTACGTTACTGATGAAGAAGTTGGACATTGCTCTATTTCAATAGAAGGACTACTTGAGACGGGGTATAAAGCGGATATTGAGGCGACTGAATATGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 C2 EF-hand_8

Protein Analysis

107

Amino Acids

11.96

Weight (kDa)

4.44

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 5 - 91 2.4e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 293
AclWI GGATC 2 cut(s) 137, 201
AcyI GRCGYC 2 cut(s) 5, 120
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 261
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 2 cut(s) 137, 201
Ama87I CYCGRG 1 cut(s) 9
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 4
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 6, 209
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 182, 296
BpuMI CCSGG 1 cut(s) 59
BsaHI GRCGYC 2 cut(s) 5, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 272
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 2 cut(s) 142, 193
BspACI CCGC 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 6, 209
BspPI GGATC 2 cut(s) 137, 201
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 247
BssMI GATC 2 cut(s) 142, 193
BssNI GRCGYC 2 cut(s) 5, 120
BstACI GRCGYC 2 cut(s) 5, 120
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 145, 196
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 2 cut(s) 142, 193
BstSCI CCNGG 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 212
CviJI RGCY 1 cut(s) 179
CviKI_1 RGCY 1 cut(s) 179
CviQI GTAC 1 cut(s) 17
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 144, 195
DpnII GATC 2 cut(s) 142, 193
Eco47I GGWCC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 1 cut(s) 215
FaiI YATR 7 cut(s) 111, 125, 127, 176, 213, 288, 315
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 211
GlaI GCGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 5, 120
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 46, 202
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 91, 171
Hpy188III TCNNGA 3 cut(s) 104, 146, 199
Hpy8I GTNNAC 2 cut(s) 91, 171
HpyAV CCTTC 2 cut(s) 36, 260
HpyCH4IV ACGT 2 cut(s) 24, 225
HpyCH4V TGCA 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 24, 225
Hsp92I GRCGYC 2 cut(s) 5, 120
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 142, 193
LpnPI CCDG 3 cut(s) 72, 159, 165
LweI GCATC 1 cut(s) 93
MaeII ACGT 2 cut(s) 24, 225
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 144, 195
MboI GATC 2 cut(s) 142, 193
MboII GAAGA 1 cut(s) 248
MflI RGATCY 1 cut(s) 193
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 6 cut(s) 5, 18, 61, 184, 295, 312
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 59
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 59
NdeII GATC 2 cut(s) 142, 193
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 2 cut(s) 6, 209
PaeR7I CTCGAG 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 46, 202
PluTI GGCGCC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 6, 209
PspPI GGNCC 1 cut(s) 208
PspXI VCTCGAGB 1 cut(s) 9
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
Sau3AI GATC 2 cut(s) 142, 193
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 59
SetI ASST 4 cut(s) 27, 181, 228, 323
SfaNI GCATC 1 cut(s) 93
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 3 cut(s) 9, 197, 275
SmoI CTYRAG 3 cut(s) 9, 197, 275
SsiI CCGC 1 cut(s) 293
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 57
TaiI ACGT 2 cut(s) 27, 228
TaqI TCGA 1 cut(s) 10
TfiI GAWTC 2 cut(s) 46, 202
TspDTI ATGAA 1 cut(s) 249
TspGWI ACGGA 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 208
XhoI CTCGAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.