Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8214482.1

Orthogroup ID

OG0007251

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 669

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8214482.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 508 bp

atgcagaaacaactatgccttggcttattcttctacaatgaactgctgcacatattttatcgcctccgagtatgtgactacaagaatgctacaccacacatagaaagattggatgctgccatgaaggctgatttgaagcaaacacagtatgtgcaacagctaactaaggaatttgatgccttaaatgagagtctctcccgccctgatctacactacagggagaggttagcactgtctgaaaaacagtctcagatacaacaccagctggcttctcttactgcattgagttcgactagcaagggaactttggaaccagcttattttggaaatatgagacgcactgatggagataagcttgagctagcaccgcctcctattgatggggaatggctaccaaaaagtgcagtctatgctcttgttgatcttatgatggttgtgctgagccgtccaaaaggaaattttagggattgtggaaagcgcattcaatctggaatgcataccattgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000785 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0032116 GO:0032501 GO:0032502 GO:0032991 GO:0034086 GO:0034088 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0097159 GO:0098813 GO:0140014 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cohesin_load

Protein Analysis

169

Amino Acids

19.4

Weight (kDa)

8.41

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51340
fragaria_vesca	FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130
malus_domestica	MD03G1047100.v1.1
prunus_persica	Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1
pyrus_communis	pycom03g03710
rosa_chinensis	RchiOBHm_Chr5g0073921
rosa_laevigata	RLG00000036425
rosa_multiflora	Rmu_co8214482.1_g000001 Rmu_sc0000470.1_g000018 Rmu_sc0038496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007450
rosa_rugosa	Rorug05G0427400 Rorug05G0427500
rosa_samantha	Rh5AG484400 Rh5BG505100 Rh5CG528900 Rh5DG517400
rosa_wichuraiana	Rw5G045030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	199, 368
AcsI	RAATTY	2 cut(s)	170, 457
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	136, 485, 506
AluBI	AGCT	5 cut(s)	160, 265, 317, 355, 361
AluI	AGCT	5 cut(s)	160, 265, 317, 355, 361
Alw26I	GTCTC	3 cut(s)	197, 252, 328
ApeKI	GCWGC	2 cut(s)	46, 116
ApoI	RAATTY	2 cut(s)	170, 457
AspLEI	GCGC	1 cut(s)	480
AsuNHI	GCTAGC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	33, 103
BccI	CCATC	3 cut(s)	338, 374, 424
BceAI	ACGGC	1 cut(s)	429
BcgI	CGANNNNNNTGC	2 cut(s)	270, 304
BcoDI	GTCTC	3 cut(s)	197, 252, 328
BfaI	CTAG	2 cut(s)	294, 362
BfmI	CTRYAG	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	47, 117
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	2 cut(s)	48, 118
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	2 cut(s)	103, 166
BmtI	GCTAGC	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bpu1102I	GCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	263, 431
BseXI	GCAGC	2 cut(s)	33, 103
BsgI	GTGCAG	2 cut(s)	32, 423
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	3 cut(s)	197, 252, 328
BsmBI	CGTCTC	1 cut(s)	328
BsmI	GAATGC	3 cut(s)	91, 480, 498
Bsp143I	GATC	2 cut(s)	205, 421
Bsp1720I	GCTNAGC	1 cut(s)	440
BspACI	CCGC	2 cut(s)	199, 368
BspCNI	CTCAG	2 cut(s)	262, 432
BspLI	GGNNCC	1 cut(s)	312
BspOI	GCTAGC	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	205, 421
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	3 cut(s)	147, 234, 246
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	267, 363
BstDEI	CTNAG	3 cut(s)	165, 249, 440
BstF5I	GGATG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	2 cut(s)	208, 424
BstMAI	GTCTC	3 cut(s)	197, 252, 328
BstMBI	GATC	2 cut(s)	205, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 367, 410
BstSFI	CTRYAG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	33, 103
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	230, 339
Cac8I	GCNNGC	2 cut(s)	267, 363
CfoI	GCGC	1 cut(s)	480
CseI	GACGC	1 cut(s)	345
CviAII	CATG	1 cut(s)	121
DdeI	CTNAG	3 cut(s)	165, 249, 440
DpnI	GATC	2 cut(s)	207, 423
DpnII	GATC	2 cut(s)	205, 421
Eco130I	CCWWGG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	1 cut(s)	124
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	47, 117
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	47, 117
FspBI	CTAG	2 cut(s)	294, 362
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	2 cut(s)	47, 117
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	68, 238, 252
Hpy188III	TCNNGA	1 cut(s)	489
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	3 cut(s)	147, 234, 246
HpyCH4V	TGCA	6 cut(s)	4, 49, 154, 281, 404, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 367, 410
HpyF3I	CTNAG	3 cut(s)	165, 249, 440
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	205, 421
LpnPI	CCDG	6 cut(s)	202, 216, 251, 275, 327, 474
Lsp1109I	GCAGC	2 cut(s)	33, 103
LweI	GCATC	2 cut(s)	103, 166
MaeI	CTAG	2 cut(s)	294, 362
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	207, 423
MboI	GATC	2 cut(s)	205, 421
MboII	GAAGA	1 cut(s)	22
MluCI	AATT	2 cut(s)	170, 457
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	3 cut(s)	74, 216, 381
Mph1103I	ATGCAT	1 cut(s)	498
MseI	TTAA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	265
Mva1269I	GAATGC	3 cut(s)	91, 480, 498
MwoI	GCNNNNNNNGC	3 cut(s)	125, 367, 410
NdeII	GATC	2 cut(s)	205, 421
NheI	GCTAGC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	498
PctI	GAATGC	3 cut(s)	91, 480, 498
PkrI	GCNGC	2 cut(s)	48, 118
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	312
PvuII	CAGCTG	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	47, 117
Sau3AI	GATC	2 cut(s)	205, 421
SchI	GAGTC	1 cut(s)	199
SetI	ASST	6 cut(s)	162, 227, 267, 319, 357, 363
SfaNI	GCATC	2 cut(s)	103, 166
SfcI	CTRYAG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	170, 457
SsiI	CCGC	2 cut(s)	199, 368
SspMI	CTAG	2 cut(s)	294, 362
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	147, 234, 246
TaqI	TCGA	1 cut(s)	290
TasI	AATT	2 cut(s)	170, 457
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	2 cut(s)	237, 346
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	46, 116
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	54, 137
TspRI	CASTG	2 cut(s)	237, 346
XapI	RAATTY	2 cut(s)	170, 457
XspI	CTAG	2 cut(s)	294, 362
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.