Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000470.1

Orthogroup ID

OG0007251

Physical Location & Seq

Genomic Coordinates Reverse (-)

81100 .. 83924

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000470.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atggatgcggtggcggaagggctgtgggggttggcggactaccaggagcagagcggcgagatcggcaaagccgtcaagtgcctggaagccatctgccaaagcgacgtgtcgtttttccccatcgtcgaggtcaagactcgtctccgaatcgctactcttctcctcaagcactcccacaacgtcaaccacgccaaggctcacttggagcgcgcgcagttgctgctcaaatccattccttcctgttttgatttgaagtgcagagcttacagtctgctcagccagtgttaccatctcgtcggctccatagctcctcagaaacacgtcctccacaaggccctggagctcactgctagcggctacgatattgcagtgaagttatggtcatgcaacttcaattcgcagctggcaaatgcgttgattattgagggagactaccagagttcgattgcggcattggacgccggctatgtttgtgctactcagataggttatcctgagttgcagatgttctttgcaacttgtatgcttcatgtacatctcatgcactgggaggatgagagttcagttgagcgagctgctgcgaaatgcgatgaggtctgggagttccttgacccccagaaatatttgacaatccttgggagtttggcactggcgctgcatgacgctggacaagcaagagagattttgagatcatccttgacattggcaaagaagctttctgatatccccacgcagatatgggtgctctctgttttgacagctttatatcaagaattaggtgagaagggaagtgaaatggagaatgttgagtttcagaagagtaggatggatgctctgcaacagaaacttatagatgcaaattcatccattcaccatattgaactaattgacacagtaaggattgaagtccagcaatttcatgaggttgacagtcgttcaacccttggcccagccatgagcgccaatcttgacattccagaatctgttggcctgtctgccccaatgcccggtcagtcaacatcaaggctagtagatatagacataggaaacataggaagacgtgggaagaggaaaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000785 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0032116 GO:0032501 GO:0032502 GO:0032991 GO:0034086 GO:0034088 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0097159 GO:0098813 GO:0140014 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cohesin_load

Protein Analysis

359

Amino Acids

39.81

Weight (kDa)

5.78

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51340
fragaria_vesca	FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130
malus_domestica	MD03G1047100.v1.1
prunus_persica	Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1
pyrus_communis	pycom03g03710
rosa_chinensis	RchiOBHm_Chr5g0073921
rosa_laevigata	RLG00000036425
rosa_multiflora	Rmu_co8214482.1_g000001 Rmu_sc0000470.1_g000018 Rmu_sc0038496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007450
rosa_rugosa	Rorug05G0427400 Rorug05G0427500
rosa_samantha	Rh5AG484400 Rh5BG505100 Rh5CG528900 Rh5DG517400
rosa_wichuraiana	Rw5G045030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AccII	CGCG	2 cut(s)	210, 212
AciI	CCGC	6 cut(s)	8, 14, 35, 54, 354, 449
AcsI	RAATTY	1 cut(s)	859
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	3 cut(s)	193, 331, 1007
AflIII	ACRYGT	2 cut(s)	105, 319
AgsI	TTSAA	5 cut(s)	253, 394, 881, 905, 939
AjiI	CACGTC	3 cut(s)	106, 322, 1061
AjnI	CCWGG	3 cut(s)	42, 81, 336
AluBI	AGCT	7 cut(s)	263, 308, 343, 403, 575, 715, 761
AluI	AGCT	7 cut(s)	263, 308, 343, 403, 575, 715, 761
Alw21I	GWGCWC	2 cut(s)	345, 747
Alw26I	GTCTC	2 cut(s)	146, 423
AlwNI	CAGNNNCTG	2 cut(s)	220, 983
AoxI	GGCC	3 cut(s)	333, 946, 988
ApeKI	GCWGC	5 cut(s)	220, 400, 575, 578, 655
ApoI	RAATTY	1 cut(s)	859
AspLEI	GCGC	5 cut(s)	210, 212, 214, 655, 962
AspS9I	GGNCC	2 cut(s)	334, 947
AsuC2I	CCSGG	1 cut(s)	1008
AsuHPI	GGTGA	2 cut(s)	791, 863
AsuNHI	GCTAGC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	1063
Bbv12I	GWGCWC	2 cut(s)	345, 747
BbvI	GCAGC	5 cut(s)	207, 412, 562, 565, 642
BccI	CCATC	4 cut(s)	98, 128, 297, 820
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	3 cut(s)	44, 83, 338
BcnI	CCSGG	1 cut(s)	1008
BcoDI	GTCTC	2 cut(s)	146, 423
BfaI	CTAG	2 cut(s)	351, 1028
BfoI	RGCGCY	2 cut(s)	656, 963
BisI	GCNGC	8 cut(s)	55, 221, 355, 401, 450, 576, 579, 656
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	8 cut(s)	56, 222, 356, 402, 451, 577, 580, 657
Bme1390I	CCNGG	4 cut(s)	44, 83, 338, 1008
BmgBI	CACGTC	3 cut(s)	106, 322, 1061
BmgT120I	GGNCC	2 cut(s)	334, 947
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	4 cut(s)	44, 83, 338, 1008
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	2 cut(s)	820, 844
BmtI	GCTAGC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	1063
BpmI	CTGGAG	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	1008
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	4 cut(s)	192, 336, 634, 943
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 331, 1007
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	3 cut(s)	280, 551, 654
BseBI	CCWGG	3 cut(s)	44, 83, 338
BseDI	CCNNGG	4 cut(s)	192, 336, 634, 943
BseGI	GGATG	6 cut(s)	10, 559, 692, 831, 835, 863
BseLI	CCNNNNNNNGG	3 cut(s)	193, 331, 1007
BseMII	CTCAG	4 cut(s)	289, 326, 486, 494
BseNI	ACTGG	3 cut(s)	280, 551, 654
BsePI	GCGCGC	2 cut(s)	208, 210
BseRI	GAGGAG	2 cut(s)	152, 300
BseXI	GCAGC	5 cut(s)	207, 412, 562, 565, 642
BseYI	CCCAGC	1 cut(s)	949
BsgI	GTGCAG	1 cut(s)	277
Bsh1236I	CGCG	2 cut(s)	210, 212
BshFI	GGCC	3 cut(s)	335, 948, 990
BsiHKAI	GWGCWC	2 cut(s)	345, 747
BsiSI	CCGG	2 cut(s)	462, 1008
BslI	CCNNNNNNNGG	3 cut(s)	193, 331, 1007
BsmAI	GTCTC	2 cut(s)	146, 423
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	335, 948, 990
Bsp1286I	GDGCHC	2 cut(s)	345, 747
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	60, 689
Bsp1720I	GCTNAGC	1 cut(s)	275
BspACI	CCGC	6 cut(s)	8, 14, 35, 54, 354, 449
BspANI	GGCC	3 cut(s)	335, 948, 990
BspCNI	CTCAG	4 cut(s)	288, 325, 487, 493
BspFNI	CGCG	2 cut(s)	210, 212
BspHI	TCATGA	1 cut(s)	919
BspLI	GGNNCC	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	354
BsrBI	CCGCTC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	461
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	280, 551, 654
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	4 cut(s)	192, 336, 634, 943
BssHII	GCGCGC	2 cut(s)	208, 210
BssMI	GATC	2 cut(s)	60, 689
BssNI	GRCGYC	1 cut(s)	459
BssT1I	CCWWGG	3 cut(s)	192, 634, 943
Bst2UI	CCWGG	3 cut(s)	44, 83, 338
Bst4CI	ACNGT	3 cut(s)	269, 895, 932
Bst6I	CTCTTC	3 cut(s)	162, 812, 1061
BstACI	GRCGYC	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	6 cut(s)	210, 212, 352, 405, 463, 573
BstDEI	CTNAG	4 cut(s)	275, 312, 480, 495
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	6 cut(s)	10, 559, 692, 831, 835, 863
BstFNI	CGCG	2 cut(s)	210, 212
BstH2I	RGCGCY	2 cut(s)	656, 963
BstHHI	GCGC	5 cut(s)	210, 212, 214, 655, 962
BstKTI	GATC	2 cut(s)	63, 692
BstMAI	GTCTC	2 cut(s)	146, 423
BstMBI	GATC	2 cut(s)	60, 689
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 220, 458, 671, 959
BstNI	CCWGG	3 cut(s)	44, 83, 338
BstSCI	CCNGG	4 cut(s)	42, 81, 336, 1006
BstUI	CGCG	2 cut(s)	210, 212
BstV1I	GCAGC	5 cut(s)	207, 412, 562, 565, 642
BstV2I	GAAGAC	1 cut(s)	1063
BsuRI	GGCC	3 cut(s)	335, 948, 990
BtgZI	GCGATG	1 cut(s)	603
BtrI	CACGTC	3 cut(s)	106, 322, 1061
BtsCI	GGATG	6 cut(s)	10, 559, 692, 831, 835, 863
BtsI	GCAGTG	2 cut(s)	345, 375
BtsIMutI	CAGTG	5 cut(s)	287, 345, 375, 544, 647
Cac8I	GCNNGC	6 cut(s)	210, 212, 352, 405, 463, 573
CaiI	CAGNNNCTG	2 cut(s)	220, 983
CciI	TCATGA	1 cut(s)	919
CfoI	GCGC	5 cut(s)	210, 212, 214, 655, 962
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	334, 947
CseI	GACGC	2 cut(s)	467, 671
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	6 cut(s)	384, 530, 541, 659, 920, 955
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	4 cut(s)	275, 312, 480, 495
DpnI	GATC	2 cut(s)	62, 691
DpnII	GATC	2 cut(s)	60, 689
Eam1104I	CTCTTC	3 cut(s)	162, 812, 1061
EarI	CTCTTC	3 cut(s)	162, 812, 1061
EciI	GGCGGA	2 cut(s)	29, 50
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	192, 634, 943
Eco24I	GRGCYC	1 cut(s)	345
Eco32I	GATATC	1 cut(s)	724
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	3 cut(s)	42, 81, 336
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	3 cut(s)	192, 634, 943
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	3 cut(s)	192, 634, 943
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	6 cut(s)	387, 533, 544, 662, 923, 958
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	6 cut(s)	383, 529, 540, 658, 919, 954
Fnu4HI	GCNGC	8 cut(s)	55, 221, 355, 401, 450, 576, 579, 656
FokI	GGATG	6 cut(s)	17, 566, 679, 838, 842, 850
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	8 cut(s)	55, 221, 355, 401, 450, 576, 579, 656
FspBI	CTAG	2 cut(s)	351, 1028
GlaI	GCGC	5 cut(s)	209, 211, 213, 654, 961
GluI	GCNGC	8 cut(s)	55, 221, 355, 401, 450, 576, 579, 656
GsaI	CCCAGC	1 cut(s)	953
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	2 cut(s)	656, 963
HaeIII	GGCC	3 cut(s)	335, 948, 990
HapII	CCGG	2 cut(s)	462, 1008
HgaI	GACGC	2 cut(s)	467, 671
HhaI	GCGC	5 cut(s)	210, 212, 214, 655, 962
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	6 cut(s)	387, 533, 544, 662, 923, 958
Hin6I	GCGC	5 cut(s)	208, 210, 212, 653, 960
HinP1I	GCGC	5 cut(s)	208, 210, 212, 653, 960
HincII	GTYRAC	3 cut(s)	184, 928, 1017
HindII	GTYRAC	3 cut(s)	184, 928, 1017
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	3 cut(s)	136, 147, 980
HpaII	CCGG	2 cut(s)	462, 1008
HphI	GGTGA	2 cut(s)	791, 863
Hpy166II	GTNNAC	3 cut(s)	184, 928, 1017
Hpy188I	TCNGA	5 cut(s)	146, 315, 483, 721, 816
Hpy188III	TCNNGA	6 cut(s)	133, 494, 770, 920, 968, 977
Hpy8I	GTNNAC	3 cut(s)	184, 928, 1017
Hpy99I	CGWCG	3 cut(s)	107, 128, 299
HpyAV	CCTTC	3 cut(s)	11, 246, 778
HpyCH4III	ACNGT	3 cut(s)	269, 895, 932
HpyCH4IV	ACGT	4 cut(s)	105, 180, 321, 1060
HpyCH4V	TGCA	9 cut(s)	258, 368, 387, 502, 515, 544, 658, 838, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 220, 458, 671, 959
HpyF3I	CTNAG	4 cut(s)	275, 312, 480, 495
HpySE526I	ACGT	4 cut(s)	105, 180, 321, 1060
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	6 cut(s)	387, 533, 544, 662, 923, 958
HspAI	GCGC	5 cut(s)	208, 210, 212, 653, 960
KroI	GCCGGC	1 cut(s)	461
KroNI	GCCGGC	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	60, 689
LmnI	GCTCC	5 cut(s)	46, 205, 305, 313, 340
Lsp1109I	GCAGC	5 cut(s)	207, 412, 562, 565, 642
LweI	GCATC	2 cut(s)	820, 844
MaeI	CTAG	2 cut(s)	351, 1028
MaeII	ACGT	4 cut(s)	105, 180, 321, 1060
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	62, 691
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	2 cut(s)	60, 689
MboII	GAAGA	4 cut(s)	149, 829, 1068, 1078
MhlI	GDGCHC	2 cut(s)	345, 747
MluCI	AATT	5 cut(s)	394, 773, 859, 885, 914
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	9 cut(s)	121, 173, 321, 335, 418, 544, 586, 916, 1062
MroNI	GCCGGC	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	2 cut(s)	462, 1008
MspR9I	CCNGG	4 cut(s)	44, 83, 338, 1008
MvaI	CCWGG	3 cut(s)	44, 83, 338
MvnI	CGCG	2 cut(s)	210, 212
MwoI	GCNNNNNNNGC	5 cut(s)	63, 220, 458, 671, 959
NaeI	GCCGGC	1 cut(s)	463
NciI	CCSGG	1 cut(s)	1008
NdeII	GATC	2 cut(s)	60, 689
NgoMIV	GCCGGC	1 cut(s)	461
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	6 cut(s)	387, 533, 544, 662, 923, 958
NlaIV	GGNNCC	1 cut(s)	301
PagI	TCATGA	1 cut(s)	919
PauI	GCGCGC	2 cut(s)	208, 210
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdiI	GCCGGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	147, 980
PkrI	GCNGC	8 cut(s)	56, 222, 356, 402, 451, 577, 580, 657
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	42, 81, 336
PspFI	CCCAGC	1 cut(s)	949
PspGI	CCWGG	3 cut(s)	42, 81, 336
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	334, 947
PstNI	CAGNNNCTG	2 cut(s)	220, 983
PteI	GCGCGC	2 cut(s)	208, 210
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	345
SatI	GCNGC	8 cut(s)	55, 221, 355, 401, 450, 576, 579, 656
Sau3AI	GATC	2 cut(s)	60, 689
Sau96I	GGNCC	2 cut(s)	334, 947
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	4 cut(s)	44, 83, 338, 1008
SduI	GDGCHC	2 cut(s)	345, 747
SfaNI	GCATC	2 cut(s)	820, 844
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	394, 773, 859, 885, 914
SsiI	CCGC	6 cut(s)	8, 14, 35, 54, 354, 449
SspI	AATATT	1 cut(s)	623
SspMI	CTAG	2 cut(s)	351, 1028
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	4 cut(s)	42, 81, 336, 1006
StyI	CCWWGG	3 cut(s)	192, 634, 943
TaaI	ACNGT	3 cut(s)	269, 895, 932
TaiI	ACGT	4 cut(s)	108, 183, 324, 1063
TaqI	TCGA	2 cut(s)	126, 443
TasI	AATT	5 cut(s)	394, 773, 859, 885, 914
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	3 cut(s)	57, 357, 452
TfiI	GAWTC	2 cut(s)	147, 980
TscAI	CASTG	5 cut(s)	287, 352, 375, 551, 654
TseI	GCWGC	5 cut(s)	220, 400, 575, 578, 655
TspDTI	ATGAA	3 cut(s)	518, 852, 908
TspRI	CASTG	5 cut(s)	287, 352, 375, 551, 654
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	2 cut(s)	351, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.