Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038496.1

Orthogroup ID

OG0007251

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1705

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038496.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 548 bp

ttttttttttggccttctcagaggagcttttgaagcttggaataaccgatggtgtgagagaagtgaatttgcagcactctgccatttggatggctggtgtgtatttaatgctacttatgcagttccttgaaaacaaagtagccatggagttgacacgatctgaatttgtagaagctcaagaggcgttggtgcagatgaagaattggtttatacgctttccaactattttacagacatgtgagagcatcattgaaatgctcagggggcagtatgctcattccgttggttgttatagtgaggcagcttttcatttcattgaagctgtaaagctcacagagagcaaatcaatgcaagcgctttgccaaatatatgctgctgtctcctacatatgcattggtgactccgaatcatctacacaggcacttgatttgattggaccagtttacagaatgatggattcatttgttggagttcgagagaaaaccaattgcctttttgcctatggtcttttattgatgaagcaacaagatctacaggaagcaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000785 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0032116 GO:0032501 GO:0032502 GO:0032991 GO:0034086 GO:0034088 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0097159 GO:0098813 GO:0140014 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cohesin_load

Protein Analysis

181

Amino Acids

20.62

Weight (kDa)

4.97

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51340
fragaria_vesca	FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130
malus_domestica	MD03G1047100.v1.1
prunus_persica	Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1
pyrus_communis	pycom03g03710
rosa_chinensis	RchiOBHm_Chr5g0073921
rosa_laevigata	RLG00000036425
rosa_multiflora	Rmu_co8214482.1_g000001 Rmu_sc0000470.1_g000018 Rmu_sc0038496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007450
rosa_rugosa	Rorug05G0427400 Rorug05G0427500
rosa_samantha	Rh5AG484400 Rh5BG505100 Rh5CG528900 Rh5DG517400
rosa_wichuraiana	Rw5G045030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	66, 163
AfeI	AGCGCT	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	33, 130, 253, 319
AluBI	AGCT	6 cut(s)	27, 36, 175, 304, 322, 330
AluI	AGCT	6 cut(s)	27, 36, 175, 304, 322, 330
Alw26I	GTCTC	1 cut(s)	384
Aor51HI	AGCGCT	1 cut(s)	356
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	3 cut(s)	72, 301, 373
ApoI	RAATTY	2 cut(s)	66, 163
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	84, 313, 360
BccI	CCATC	3 cut(s)	43, 84, 447
BcoDI	GTCTC	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	532
BfoI	RGCGCY	1 cut(s)	358
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	3 cut(s)	73, 302, 374
BlsI	GCNGC	3 cut(s)	74, 303, 375
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmsI	GCATC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	32, 273
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	3 cut(s)	84, 313, 360
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	157, 528
Bsp19I	CCATGG	1 cut(s)	143
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	2 cut(s)	31, 272
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	2 cut(s)	157, 528
BssT1I	CCWWGG	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	18, 259
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	2 cut(s)	160, 531
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	2 cut(s)	157, 528
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 117, 181, 264
BstNSI	RCATGY	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	532
BstV1I	GCAGC	3 cut(s)	84, 313, 360
BstX2I	RGATCY	1 cut(s)	528
BstXI	CCANNNNNNTGG	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	353
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	436
CviAII	CATG	2 cut(s)	144, 236
CviJI	RGCY	9 cut(s)	13, 27, 36, 94, 142, 175, 304, 322, 330
CviKI_1	RGCY	9 cut(s)	13, 27, 36, 94, 142, 175, 304, 322, 330
DdeI	CTNAG	2 cut(s)	18, 259
DpnI	GATC	2 cut(s)	159, 530
DpnII	GATC	2 cut(s)	157, 528
Eco130I	CCWWGG	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	436
Eco47III	AGCGCT	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	2 cut(s)	147, 239
FatI	CATG	2 cut(s)	143, 235
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	3 cut(s)	73, 302, 374
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	73, 302, 374
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	3 cut(s)	73, 302, 374
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	147, 239
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	3 cut(s)	400, 406, 457
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	152, 444
Hpy188I	TCNGA	3 cut(s)	21, 162, 405
Hpy188III	TCNNGA	2 cut(s)	178, 475
Hpy8I	GTNNAC	2 cut(s)	152, 444
HpyAV	CCTTC	1 cut(s)	24
HpyCH4V	TGCA	5 cut(s)	72, 120, 192, 351, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 117, 181, 264
HpyF3I	CTNAG	2 cut(s)	18, 259
Hsp92II	CATG	2 cut(s)	147, 239
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	157, 528
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	5 cut(s)	80, 246, 403, 452, 520
Lsp1109I	GCAGC	3 cut(s)	84, 313, 360
LweI	GCATC	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	159, 530
MboI	GATC	2 cut(s)	157, 528
MboII	GAAGA	1 cut(s)	210
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	528
MluCI	AATT	4 cut(s)	66, 163, 201, 486
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	2 cut(s)	244, 447
MnlI	CCTC	3 cut(s)	15, 174, 291
Mph1103I	ATGCAT	1 cut(s)	394
MseI	TTAA	1 cut(s)	106
MslI	CAYNNNNRTG	2 cut(s)	88, 253
MunI	CAATTG	1 cut(s)	486
MwoI	GCNNNNNNNGC	4 cut(s)	33, 117, 181, 264
NcoI	CCATGG	1 cut(s)	143
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	2 cut(s)	157, 528
NlaIII	CATG	2 cut(s)	147, 239
NmuCI	GTSAC	1 cut(s)	397
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	1 cut(s)	239
PciI	ACATGT	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	406, 457
PkrI	GCNGC	3 cut(s)	74, 303, 375
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	528
RseI	CAYNNNNRTG	2 cut(s)	88, 253
SaqAI	TTAA	1 cut(s)	106
SatI	GCNGC	3 cut(s)	73, 302, 374
Sau3AI	GATC	2 cut(s)	157, 528
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	1 cut(s)	394
SetI	ASST	7 cut(s)	29, 38, 177, 306, 324, 332, 547
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	532
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	88, 253
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	66, 163, 201, 486
StyI	CCWWGG	1 cut(s)	143
TaqI	TCGA	1 cut(s)	474
TasI	AATT	4 cut(s)	66, 163, 201, 486
TfiI	GAWTC	2 cut(s)	406, 457
Tru1I	TTAA	1 cut(s)	106
Tru9I	TTAA	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	3 cut(s)	72, 301, 373
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	5 cut(s)	211, 298, 303, 449, 532
TspGWI	ACGGA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	2 cut(s)	66, 163
XceI	RCATGY	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.