Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007251

Physical Location & Seq

Genomic Coordinates Forward (+)

9547979 .. 9552495

Gene Structure 4517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGCATGCGTTCCCTCAGATGTTCTTTGCAACTTGTATGCTCCATGTACATCTCATGCACTGGGAGGATGAGAGTTCAGTTGAGCGAGCTGCTGCCAAATGCGATGAGGTCTGGGAGTTCCTTGACCCCCAGAAAAAACAACTATGCCTTGGCTTATTCTTCTACAATGAACTGCTGCACATATTTTATCGCCTCCGAGTATGTGACTACAAGAATGCTACACCACACATAGAAAGATTGGATGCTGCTATGAAGGCCGATTTGAAGCAAACACAGTATGTGCAACAGCTAACTAAGGAATTTGATGCCTTAAATGAGAGTCTCTCCCGCCCTGATCTACACTACAGGGAAAGGTTAGCACTGTCTGAAAAACAGTCTCGGATACAACACCAGCTGGCTTCTCTTACTGCATTGAGTTCCACTAGCAAGGGAACTTTGGAACCAGCTTATTTTGGAAATATGAGACGCACTGATGGAGATAAGCTTGAGCTAGCACCGCCTCCTATTGATGGGGAATGGCTACCAAAAAGTGCAGTCTATGCTCTTGTTGATCTTATGATGGTTGTGCTGAGCCGTCCAAAAGGAAATTTTAAGGATTGTGGAAAGCGCATTCAATCTGGAATGCATACCATTGAAGAGGAGCTTTTAAAGCTTGGAATAACCGATGGTGTGAGAGAAGTGAATTTGCAGCACTCTGCCATTTGGATGGCTGGTGTGTATTTAATGCTACTTATGCAGTTCCTTGAAAACAAAGTAGCCATGGAGTTGACACGATCTGAATTTGTAGAAGCACAAGAGGGCGTTGGTGCAGATGAAGAATTGGGGCAGTATGCTCATTCCGTTGGTTGTTATAATGAGGCAGCTTTTCATTTCATTGAAGCTGTAAAGCTCACAGAGAGCAAATCAATGCAAGCCCTTTGCCAAATATATGCTGCTGTCTCCTACATATGCATTGGTGACTCTGAATCATCTACACAGGCACTTGATTTGATTGGACCAGTTTACAGAATGATGGATTCATTTGTTGGAGTTCGAGAGAAAACCAATTGCCTTTTTGCCTATGGTCTTTTATTGATGAAGCAACAAGATCTACAGGAAGCAAGAAACCGACTCGCCAAAGCTTTATATCAAGAATTAGGTGAGAAGGGAAGTGAAATGGAGAATGTTGAGTTTCAGAAGAGTAGGATGGATGCTCTGCAACAGAAACTTATAGATGCAAATTCGTCCATTCACCACATTGACCTAATTGACACAGTAAGGATTGAAGTCCAGCAATTTCATGAGGTTGACAGTCGTTCAACCCTTGGCCCAGCCATGAGCGCCAATCTTGACATTCCAGAATCTGTTGGCCTGTCTGCCCCAATGCCTGGTCAGTCGACATCAAGGCTAGTAGATATAGACATAGGAAACATAGGAAGACGTGGGAAGAGGAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000785 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0032116 GO:0032501 GO:0032502 GO:0032991 GO:0034086 GO:0034088 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0097159 GO:0098813 GO:0140014 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cohesin_load

Protein Analysis

479

Amino Acids

54.25

Weight (kDa)

5.52

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51340
fragaria_vesca	FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130
malus_domestica	MD03G1047100.v1.1
prunus_persica	Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1
pyrus_communis	pycom03g03710
rosa_chinensis	RchiOBHm_Chr5g0073921
rosa_laevigata	RLG00000036425
rosa_multiflora	Rmu_co8214482.1_g000001 Rmu_sc0000470.1_g000018 Rmu_sc0038496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007450
rosa_rugosa	Rorug05G0427400 Rorug05G0427500
rosa_samantha	Rh5AG484400 Rh5BG505100 Rh5CG528900 Rh5DG517400
rosa_wichuraiana	Rw5G045030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
AccB7I	CCANNNNNTGG	1 cut(s)	1367
AccI	GTMKAC	1 cut(s)	1376
AciI	CCGC	2 cut(s)	328, 497
AcsI	RAATTY	5 cut(s)	299, 586, 682, 779, 1219
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	509, 1367
AgsI	TTSAA	7 cut(s)	265, 614, 635, 746, 878, 1265, 1299
AjiI	CACGTC	1 cut(s)	1421
AjnI	CCWGG	1 cut(s)	1366
Alw26I	GTCTC	4 cut(s)	326, 381, 457, 943
AlwNI	CAGNNNCTG	1 cut(s)	1343
AoxI	GGCC	3 cut(s)	255, 1306, 1348
ApeKI	GCWGC	7 cut(s)	89, 92, 175, 245, 688, 860, 932
ApoI	RAATTY	5 cut(s)	299, 586, 682, 779, 1219
AspLEI	GCGC	2 cut(s)	609, 1322
AspS9I	GGNCC	2 cut(s)	995, 1307
AsuHPI	GGTGA	3 cut(s)	968, 1151, 1223
AsuNHI	GCTAGC	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	1423
BbvI	GCAGC	7 cut(s)	76, 79, 162, 232, 700, 872, 919
BccI	CCATC	7 cut(s)	467, 503, 553, 659, 700, 1006, 1180
BceAI	ACGGC	1 cut(s)	558
BciT130I	CCWGG	1 cut(s)	1368
BciVI	GTATCC	1 cut(s)	375
BcoDI	GTCTC	4 cut(s)	326, 381, 457, 943
BfaI	CTAG	3 cut(s)	423, 491, 1388
BfmI	CTRYAG	2 cut(s)	343, 1091
BfoI	RGCGCY	1 cut(s)	1323
BfuI	GTATCC	1 cut(s)	375
BglII	AGATCT	1 cut(s)	1087
BisI	GCNGC	7 cut(s)	90, 93, 176, 246, 689, 861, 933
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	7 cut(s)	91, 94, 177, 247, 690, 862, 934
Bme1390I	CCNGG	1 cut(s)	1368
Bme18I	GGWCC	1 cut(s)	995
BmgBI	CACGTC	1 cut(s)	1421
BmgT120I	GGNCC	2 cut(s)	995, 1307
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	1368
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	4 cut(s)	232, 295, 1180, 1204
BmtI	GCTAGC	1 cut(s)	494
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	1423
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu1102I	GCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	148, 759, 1303
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 1367
Bse1I	ACTGG	2 cut(s)	65, 998
BseBI	CCWGG	1 cut(s)	1368
BseDI	CCNNGG	3 cut(s)	148, 759, 1303
BseGI	GGATG	5 cut(s)	73, 247, 711, 1191, 1195
BseLI	CCNNNNNNNGG	2 cut(s)	509, 1367
BseMII	CTCAG	2 cut(s)	29, 560
BseNI	ACTGG	2 cut(s)	65, 998
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	7 cut(s)	76, 79, 162, 232, 700, 872, 919
BseYI	CCCAGC	1 cut(s)	1309
BsgI	GTGCAG	3 cut(s)	161, 552, 828
BshFI	GGCC	3 cut(s)	257, 1308, 1350
BslI	CCNNNNNNNGG	2 cut(s)	509, 1367
BsmAI	GTCTC	4 cut(s)	326, 381, 457, 943
BsmBI	CGTCTC	1 cut(s)	457
BsmI	GAATGC	3 cut(s)	220, 609, 627
BsnI	GGCC	3 cut(s)	257, 1308, 1350
Bsp1407I	TGTACA	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	334, 550, 773, 1087
Bsp1720I	GCTNAGC	1 cut(s)	569
Bsp19I	CCATGG	1 cut(s)	759
BspACI	CCGC	2 cut(s)	328, 497
BspANI	GGCC	3 cut(s)	257, 1308, 1350
BspCNI	CTCAG	2 cut(s)	28, 561
BspHI	TCATGA	1 cut(s)	1279
BspLI	GGNNCC	1 cut(s)	441
BspOI	GCTAGC	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	65, 998
BssECI	CCNNGG	3 cut(s)	148, 759, 1303
BssMI	GATC	4 cut(s)	334, 550, 773, 1087
BssT1I	CCWWGG	3 cut(s)	148, 759, 1303
Bst2UI	CCWGG	1 cut(s)	1368
Bst4CI	ACNGT	5 cut(s)	276, 363, 375, 1255, 1292
Bst6I	CTCTTC	3 cut(s)	630, 1172, 1421
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	46
BstC8I	GCNNGC	5 cut(s)	6, 87, 396, 492, 912
BstDEI	CTNAG	3 cut(s)	15, 294, 569
BstDSI	CCRYGG	1 cut(s)	759
BstF5I	GGATG	5 cut(s)	73, 247, 711, 1191, 1195
BstH2I	RGCGCY	1 cut(s)	1323
BstHHI	GCGC	2 cut(s)	609, 1322
BstKTI	GATC	4 cut(s)	337, 553, 776, 1090
BstMAI	GTCTC	4 cut(s)	326, 381, 457, 943
BstMBI	GATC	4 cut(s)	334, 550, 773, 1087
BstMWI	GCNNNNNNNGC	6 cut(s)	254, 496, 539, 649, 733, 1319
BstNI	CCWGG	1 cut(s)	1368
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	1366
BstSFI	CTRYAG	2 cut(s)	343, 1091
BstV1I	GCAGC	7 cut(s)	76, 79, 162, 232, 700, 872, 919
BstV2I	GAAGAC	1 cut(s)	1423
BstX2I	RGATCY	1 cut(s)	1087
BstXI	CCANNNNNNTGG	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	1087
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	257, 1308, 1350
BtgI	CCRYGG	1 cut(s)	759
BtgZI	GCGATG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	1421
BtsCI	GGATG	5 cut(s)	73, 247, 711, 1191, 1195
BtsIMutI	CAGTG	3 cut(s)	58, 359, 468
Cac8I	GCNNGC	5 cut(s)	6, 87, 396, 492, 912
CaiI	CAGNNNCTG	1 cut(s)	1343
CciI	TCATGA	1 cut(s)	1279
CfoI	GCGC	2 cut(s)	609, 1322
Cfr13I	GGNCC	2 cut(s)	995, 1307
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	6 cut(s)	5, 44, 55, 760, 1280, 1315
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	15, 294, 569
DpnI	GATC	4 cut(s)	336, 552, 775, 1089
DpnII	GATC	4 cut(s)	334, 550, 773, 1087
DraI	TTTAAA	1 cut(s)	648
Eam1104I	CTCTTC	3 cut(s)	630, 1172, 1421
EarI	CTCTTC	3 cut(s)	630, 1172, 1421
Eco130I	CCWWGG	3 cut(s)	148, 759, 1303
Eco47I	GGWCC	1 cut(s)	995
EcoRII	CCWGG	1 cut(s)	1366
EcoT14I	CCWWGG	3 cut(s)	148, 759, 1303
EcoT22I	ATGCAT	3 cut(s)	6, 627, 953
ErhI	CCWWGG	3 cut(s)	148, 759, 1303
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	6 cut(s)	8, 47, 58, 763, 1283, 1318
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FatI	CATG	6 cut(s)	4, 43, 54, 759, 1279, 1314
FauI	CCCGC	1 cut(s)	335
FauNDI	CATATG	1 cut(s)	947
FblI	GTMKAC	1 cut(s)	1376
Fnu4HI	GCNGC	7 cut(s)	90, 93, 176, 246, 689, 861, 933
FokI	GGATG	5 cut(s)	80, 254, 718, 1198, 1202
Fsp4HI	GCNGC	7 cut(s)	90, 93, 176, 246, 689, 861, 933
FspBI	CTAG	3 cut(s)	423, 491, 1388
GlaI	GCGC	2 cut(s)	608, 1321
GluI	GCNGC	7 cut(s)	90, 93, 176, 246, 689, 861, 933
GsaI	CCCAGC	1 cut(s)	1313
HaeII	RGCGCY	1 cut(s)	1323
HaeIII	GGCC	3 cut(s)	257, 1308, 1350
HgaI	GACGC	1 cut(s)	474
HhaI	GCGC	2 cut(s)	609, 1322
Hin1II	CATG	6 cut(s)	8, 47, 58, 763, 1283, 1318
Hin6I	GCGC	2 cut(s)	607, 1320
HinP1I	GCGC	2 cut(s)	607, 1320
HincII	GTYRAC	3 cut(s)	768, 1288, 1377
HindII	GTYRAC	3 cut(s)	768, 1288, 1377
HindIII	AAGCTT	3 cut(s)	482, 650, 1119
HinfI	GANTC	6 cut(s)	319, 959, 965, 1016, 1110, 1340
HphI	GGTGA	3 cut(s)	968, 1151, 1223
Hpy166II	GTNNAC	4 cut(s)	768, 1003, 1288, 1377
Hpy188I	TCNGA	7 cut(s)	18, 197, 367, 381, 778, 964, 1176
Hpy188III	TCNNGA	6 cut(s)	618, 1034, 1130, 1280, 1328, 1337
Hpy8I	GTNNAC	4 cut(s)	768, 1003, 1288, 1377
HpyAV	CCTTC	2 cut(s)	247, 1138
HpyCH4III	ACNGT	5 cut(s)	276, 363, 375, 1255, 1292
HpyCH4IV	ACGT	1 cut(s)	1420
HpyF10VI	GCNNNNNNNGC	6 cut(s)	254, 496, 539, 649, 733, 1319
HpyF3I	CTNAG	3 cut(s)	15, 294, 569
HpySE526I	ACGT	1 cut(s)	1420
Hsp92II	CATG	6 cut(s)	8, 47, 58, 763, 1283, 1318
HspAI	GCGC	2 cut(s)	607, 1320
Kzo9I	GATC	4 cut(s)	334, 550, 773, 1087
LmnI	GCTCC	2 cut(s)	45, 640
Lsp1109I	GCAGC	7 cut(s)	76, 79, 162, 232, 700, 872, 919
LweI	GCATC	4 cut(s)	232, 295, 1180, 1204
MaeI	CTAG	3 cut(s)	423, 491, 1388
MaeII	ACGT	1 cut(s)	1420
MaeIII	GTNAC	2 cut(s)	203, 956
MalI	GATC	4 cut(s)	336, 552, 775, 1089
MboI	GATC	4 cut(s)	334, 550, 773, 1087
MboII	GAAGA	6 cut(s)	151, 647, 827, 1189, 1428, 1438
MfeI	CAATTG	1 cut(s)	1045
MflI	RGATCY	1 cut(s)	1087
MlyI	GAGTC	3 cut(s)	328, 953, 1104
MmeI	TCCRAC	1 cut(s)	1006
Mph1103I	ATGCAT	3 cut(s)	6, 627, 953
MseI	TTAA	4 cut(s)	311, 591, 647, 722
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	1368
MunI	CAATTG	1 cut(s)	1045
Mva1269I	GAATGC	3 cut(s)	220, 609, 627
MvaI	CCWGG	1 cut(s)	1368
MwoI	GCNNNNNNNGC	6 cut(s)	254, 496, 539, 649, 733, 1319
NcoI	CCATGG	1 cut(s)	759
NdeI	CATATG	1 cut(s)	947
NdeII	GATC	4 cut(s)	334, 550, 773, 1087
NheI	GCTAGC	1 cut(s)	490
NlaIII	CATG	6 cut(s)	8, 47, 58, 763, 1283, 1318
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	2 cut(s)	203, 956
NsiI	ATGCAT	3 cut(s)	6, 627, 953
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	1279
PctI	GAATGC	3 cut(s)	220, 609, 627
PfeI	GAWTC	3 cut(s)	965, 1016, 1340
PflMI	CCANNNNNTGG	1 cut(s)	1367
PkrI	GCNGC	7 cut(s)	91, 94, 177, 247, 690, 862, 934
PleI	GAGTC	3 cut(s)	327, 953, 1104
PpsI	GAGTC	3 cut(s)	327, 953, 1104
PsiI	TTATAA	1 cut(s)	852
Psp6I	CCWGG	1 cut(s)	1366
PspFI	CCCAGC	1 cut(s)	1309
PspGI	CCWGG	1 cut(s)	1366
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	995, 1307
PstNI	CAGNNNCTG	1 cut(s)	1343
PsuI	RGATCY	1 cut(s)	1087
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	704
SalI	GTCGAC	1 cut(s)	1375
SaqAI	TTAA	4 cut(s)	311, 591, 647, 722
SatI	GCNGC	7 cut(s)	90, 93, 176, 246, 689, 861, 933
Sau3AI	GATC	4 cut(s)	334, 550, 773, 1087
Sau96I	GGNCC	2 cut(s)	995, 1307
SchI	GAGTC	3 cut(s)	328, 953, 1104
ScrFI	CCNGG	1 cut(s)	1368
SfaNI	GCATC	4 cut(s)	232, 295, 1180, 1204
SfcI	CTRYAG	2 cut(s)	343, 1091
SinI	GGWCC	1 cut(s)	995
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SphI	GCATGC	1 cut(s)	8
SsiI	CCGC	2 cut(s)	328, 497
SspMI	CTAG	3 cut(s)	423, 491, 1388
StyD4I	CCNGG	1 cut(s)	1366
StyI	CCWWGG	3 cut(s)	148, 759, 1303
TaaI	ACNGT	5 cut(s)	276, 363, 375, 1255, 1292
TaiI	ACGT	1 cut(s)	1423
TaqI	TCGA	2 cut(s)	1033, 1376
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	965, 1016, 1340
Tru1I	TTAA	4 cut(s)	311, 591, 647, 722
Tru9I	TTAA	4 cut(s)	311, 591, 647, 722
TscAI	CASTG	3 cut(s)	65, 366, 475
TseFI	GTSAC	2 cut(s)	203, 956
TseI	GCWGC	7 cut(s)	89, 92, 175, 245, 688, 860, 932
Tsp45I	GTSAC	2 cut(s)	203, 956
TspDTI	ATGAA	8 cut(s)	183, 266, 828, 857, 862, 1008, 1091, 1268
TspGWI	ACGGA	1 cut(s)	829
TspRI	CASTG	3 cut(s)	65, 366, 475
Van91I	CCANNNNNTGG	1 cut(s)	1367
VpaK11BI	GGWCC	1 cut(s)	995
XapI	RAATTY	5 cut(s)	299, 586, 682, 779, 1219
XceI	RCATGY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	1376
XspI	CTAG	3 cut(s)	423, 491, 1388
Zsp2I	ATGCAT	3 cut(s)	6, 627, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.