Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007251

Physical Location & Seq

Genomic Coordinates Reverse (-)

59420891 .. 59424136

Gene Structure 3246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0427400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGGAGTGAATCAGAGCCGCTCATTTTGAATAGTAGAAGGCTGCCATTGCTTTTTTACTCCTCGCGTGTCATTGTTGCGCAGAAACAGAGAGCTCTAGAACTGATCCACAGTCTCAGAGGAAAAAGATACGCTGACTCTGCAACACTGATCGTGAATCTTCAACAGCCCGTCAACTTTCTCTCCGTCTCCGTCTCCGTCGACAACGTGAAGGTGAAGTTTCAATTTCGTCCAAGTTTCAATTCCCATACAGATCATTTGTACTTATCATTTGCCATACCTCTACAGATGCTACATAGTGTTCAACTGGTTGCCACAGCTTGCTTTCTCTGCTGCTCTGTAAAGAAAATCCAAACTCCCAAGTCAAGATATATGGTGCCTGTCGGAGTGCTGAAAAGACATTCTACACCTCAGGATGTTTGCCAAGATTTTGCACCATTGGCAAAGAATGATGGAAGCAGTAGCTTTCAAATTAAGACATTTGCAAATGCCATAGTAGCAGCACCTGTGTACCTAATTGGAGCAGAATTGCTCATGTATGTAGCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000785 GO:0000819 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0022402 GO:0022414 GO:0032116 GO:0032501 GO:0032502 GO:0032991 GO:0034086 GO:0034088 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0097159 GO:0098813 GO:0140014 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cohesin_load

Protein Analysis

183

Amino Acids

20.41

Weight (kDa)

9.73

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51340
fragaria_vesca	FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130 FvH4_3g41130
malus_domestica	MD03G1047100.v1.1
prunus_persica	Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1 Prupe.6G038300_v2.0.a1
pyrus_communis	pycom03g03710
rosa_chinensis	RchiOBHm_Chr5g0073921
rosa_laevigata	RLG00000036425
rosa_multiflora	Rmu_co8214482.1_g000001 Rmu_sc0000470.1_g000018 Rmu_sc0038496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007450
rosa_rugosa	Rorug05G0427400 Rorug05G0427500
rosa_samantha	Rh5AG484400 Rh5BG505100 Rh5CG528900 Rh5DG517400
rosa_wichuraiana	Rw5G045030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	1 cut(s)	67
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	100
AfaI	GTAC	2 cut(s)	263, 512
AgsI	TTSAA	6 cut(s)	31, 164, 224, 241, 305, 470
AjuI	GAANNNNNNNTTGG	2 cut(s)	226, 258
AluBI	AGCT	4 cut(s)	95, 320, 465, 545
AluI	AGCT	4 cut(s)	95, 320, 465, 545
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	3 cut(s)	119, 193, 199
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	506
ApeKI	GCWGC	3 cut(s)	43, 333, 500
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	411
BaeI	ACNNNNGTAYC	2 cut(s)	494, 527
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	30, 320, 512
BccI	CCATC	1 cut(s)	446
BcoDI	GTCTC	3 cut(s)	119, 193, 199
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	284
BisI	GCNGC	4 cut(s)	20, 44, 334, 501
BlsI	GCNGC	4 cut(s)	21, 45, 335, 502
BmiI	GGNNCC	1 cut(s)	378
BmsI	GCATC	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bse1I	ACTGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	130, 425
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	19, 52
BseXI	GCAGC	3 cut(s)	30, 320, 512
Bsh1236I	CGCG	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	97
BsmAI	GTCTC	3 cut(s)	119, 193, 199
BsmBI	CGTCTC	2 cut(s)	193, 199
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	105, 150, 253
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	129, 424
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	376
BsrBI	CCGCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	312
BssMI	GATC	3 cut(s)	105, 150, 253
Bst4CI	ACNGT	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	116, 411
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	3 cut(s)	108, 153, 256
BstMAI	GTCTC	3 cut(s)	119, 193, 199
BstMBI	GATC	3 cut(s)	105, 150, 253
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 140, 330, 440, 497
BstSFI	CTRYAG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	3 cut(s)	30, 320, 512
Bsu36I	CCTNAGG	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	262, 511
CviAII	CATG	1 cut(s)	535
CviJI	RGCY	7 cut(s)	19, 43, 95, 169, 320, 465, 545
CviKI_1	RGCY	7 cut(s)	19, 43, 95, 169, 320, 465, 545
CviQI	GTAC	2 cut(s)	262, 511
DdeI	CTNAG	2 cut(s)	116, 411
DpnI	GATC	3 cut(s)	107, 152, 255
DpnII	GATC	3 cut(s)	105, 150, 253
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	411
EcoICRI	GAGCTC	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	97
Esp3I	CGTCTC	2 cut(s)	193, 199
FaeI	CATG	1 cut(s)	538
FaiI	YATR	8 cut(s)	249, 278, 297, 372, 374, 494, 536, 540
FatI	CATG	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	20, 44, 334, 501
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	4 cut(s)	20, 44, 334, 501
FspBI	CTAG	1 cut(s)	98
FspI	TGCGCA	1 cut(s)	81
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	4 cut(s)	20, 44, 334, 501
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	538
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	2 cut(s)	175, 202
HindII	GTYRAC	2 cut(s)	175, 202
HinfI	GANTC	3 cut(s)	11, 137, 157
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	3 cut(s)	175, 202, 511
Hpy188I	TCNGA	3 cut(s)	16, 119, 386
Hpy188III	TCNNGA	4 cut(s)	98, 154, 366, 413
Hpy8I	GTNNAC	3 cut(s)	175, 202, 511
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	33, 205
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	143, 434, 485
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 140, 330, 440, 497
HpyF3I	CTNAG	2 cut(s)	116, 411
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	538
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	3 cut(s)	105, 150, 253
LmnI	GCTCC	1 cut(s)	521
LpnPI	CCDG	5 cut(s)	293, 393, 398, 519, 531
Lsp1109I	GCAGC	3 cut(s)	30, 320, 512
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	207
MalI	GATC	3 cut(s)	107, 152, 255
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	3 cut(s)	105, 150, 253
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	5 cut(s)	224, 241, 471, 516, 527
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	4 cut(s)	73, 113, 291, 420
MseI	TTAA	2 cut(s)	474, 550
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	5 cut(s)	49, 140, 330, 440, 497
NdeII	GATC	3 cut(s)	105, 150, 253
NlaIII	CATG	1 cut(s)	538
NlaIV	GGNNCC	1 cut(s)	378
NsbI	TGCGCA	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	11, 157
PkrI	GCNGC	4 cut(s)	21, 45, 335, 502
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	506
RsaI	GTAC	2 cut(s)	263, 512
RsaNI	GTAC	2 cut(s)	262, 511
SacI	GAGCTC	1 cut(s)	97
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	474, 550
SatI	GCNGC	4 cut(s)	20, 44, 334, 501
Sau3AI	GATC	3 cut(s)	105, 150, 253
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	284
Sse9I	AATT	5 cut(s)	224, 241, 471, 516, 527
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	224, 241, 471, 516, 527
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	11, 157
Tru1I	TTAA	2 cut(s)	474, 550
Tru9I	TTAA	2 cut(s)	474, 550
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	3 cut(s)	43, 333, 500
TspGWI	ACGGA	3 cut(s)	175, 181, 187
TspRI	CASTG	1 cut(s)	153
XbaI	TCTAGA	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.