Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8249473.1

Orthogroup ID

OG0007470

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 649

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8249473.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atctattcccggctggaccaagtttttgatgctcctactgctgtgaaagaggttttgatcggccagtttggcttagatagatcatacattggatcccagcaaactgatcagaaagctgatctggtttccaagttggggattttggatttttggactccagagaatcactatcggtgttcagtatctagatatggtggtcatgtttcttcaagtgtagagccagtggatcgttctaaactttttctgtgtggtctggatactggagagatcgaaagactgaaatctaacaaaattgagcttgaagaatctgttgctactttacaggaaagtgttagattgcttcagattgagcaaagtcacattgaggatgaagaagctaaacttcataaacggagggtaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000819 GO:0005575 GO:0005911 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0009506 GO:0009987 GO:0016043 GO:0022402 GO:0030054 GO:0051276 GO:0055044 GO:0071840 GO:0098813

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_23 SMC_N

Protein Analysis

134

Amino Acids

15.21

Weight (kDa)

5.37

Isoelectric Point (pI)

71.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15920
fragaria_vesca	FvH4_7g01640 FvH4_7g01640 FvH4_7g01640 FvH4_7g01640 FvH4_7g01640
malus_domestica	MD07G1021900.v1.1
prunus_persica	Prupe.2G022000_v2.0.a1 Prupe.2G022000_v2.0.a1
pyrus_communis	pycom07g01660
rosa_chinensis	RchiOBHm_Chr1g0317911
rosa_laevigata	RLG00000029591 RLG00000030577
rosa_multiflora	Rmu_co8249473.1_g000001 Rmu_sc0000654.1_g000055 Rmu_sc0002922.1_g000001 Rmu_ssc0000008.1_g000048
rosa_roxburghii	Rroxscaffold_4G00330130
rosa_rugosa	Rorug01G0018500 Rorug01G0018600
rosa_samantha	Rh1AG030100 Rh1BG026200 Rh1CG028700 Rh1DG041400
rosa_wichuraiana	Rw1G002270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	87, 100, 234
AcoI	YGGCCR	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	210, 302
AluBI	AGCT	3 cut(s)	116, 298, 377
AluI	AGCT	3 cut(s)	116, 298, 377
AlwI	GGATC	3 cut(s)	87, 100, 234
AoxI	GGCC	1 cut(s)	61
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	141, 282
BpuMI	CCSGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	3 cut(s)	64, 221, 265
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseNI	ACTGG	3 cut(s)	64, 221, 265
BseYI	CCCAGC	1 cut(s)	96
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	135
BsnI	GGCC	1 cut(s)	63
Bsp143I	GATC	7 cut(s)	57, 80, 92, 106, 118, 226, 267
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	3 cut(s)	87, 100, 234
BsrI	ACTGG	3 cut(s)	64, 221, 265
BssMI	GATC	7 cut(s)	57, 80, 92, 106, 118, 226, 267
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	7 cut(s)	60, 83, 95, 109, 121, 229, 270
BstMBI	GATC	7 cut(s)	57, 80, 92, 106, 118, 226, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 69
BstSCI	CCNGG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	7 cut(s)	13, 63, 72, 116, 220, 298, 377
CviKI_1	RGCY	7 cut(s)	13, 63, 72, 116, 220, 298, 377
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	7 cut(s)	59, 82, 94, 108, 120, 228, 269
DpnII	GATC	7 cut(s)	57, 80, 92, 106, 118, 226, 267
EaeI	YGGCCR	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	326
FaeI	CATG	1 cut(s)	203
FaiI	YATR	4 cut(s)	85, 192, 201, 387
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	106
FokI	GGATG	1 cut(s)	380
FspBI	CTAG	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	2 cut(s)	141, 282
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	3 cut(s)	154, 163, 305
HpaII	CCGG	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	111, 345
Hpy188III	TCNNGA	3 cut(s)	158, 186, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 69
HpyF3I	CTNAG	1 cut(s)	73
Hsp92II	CATG	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	7 cut(s)	57, 80, 92, 106, 118, 226, 267
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	9 cut(s)	23, 77, 107, 110, 171, 234, 239, 246, 308
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	7 cut(s)	59, 82, 94, 108, 120, 228, 269
MboI	GATC	7 cut(s)	57, 80, 92, 106, 118, 226, 267
MboII	GAAGA	3 cut(s)	198, 314, 383
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	3 cut(s)	43, 358, 387
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	38, 69
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	7 cut(s)	57, 80, 92, 106, 118, 226, 267
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	163, 305
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	92
Sau3AI	GATC	7 cut(s)	57, 80, 92, 106, 118, 226, 267
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	4 cut(s)	54, 118, 300, 379
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	8
TaqI	TCGA	1 cut(s)	270
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	163, 305
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	374, 384
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	16
XbaI	TCTAGA	1 cut(s)	185
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.