Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002218

Physical Location & Seq

Genomic Coordinates Forward (+)

3102655 .. 3105101

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0018600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTGGCGGCGGATGAGGCAGGCACCATGGACGAAGAGGTTTTCAAGCTTAAAGAGAAGCTTTCTCAATGCCAACTCGAAAGGGAGCAGCTCCTGAGAGAGAAAGAGAGCTGGATGATCAAGGAGCAACTTGTGATGCGGGAAAAAGAAGAAGTAGAACAAAAGCTCAGAATTGAAATAGAGGCGAATTTGTGCGCAAGATCTGAATTTGAAAAAAAAGAGAAGCCACTCAAGGAGGCCTTGGAGACCAAAAAGAAGAGTTTACGTCAGCTAAAGAAGGCATTCAATGAGTTTCATGCTAATGGTGAAATGCCTTATATGGGAGCACGATCAGCCAATGCCAATGACAAGTTAAAGAGATTGCGTGCTGAATTAGAAAAGAAAAATAAGTGCTCACAAGCAGAGAGAGATAAGCTGGACAAGCTACATTCAGAGATAATTGAGAAACGGGACAATTTATTTGCTTTTCTTAAGACTTGTGTGAAATATTCAAAGATCACTGATGATGTAAAACACTTGCTCCGAGTCCACTATGATGCATATATTGACAAACGCAGGACTGAAAATGATGATTGTGAACTGTTAAGAAAGTATGTGCATTTTGTTCTACAACCGGGTTCTGCTCAGAAGCAAAATGAGATGTTTGCCGGGGTTGATTTTATATCTCCAATTTTTGCTGCAATGTCAAAAAATTTTAACGTCTTCCTGAGAAAAAAGACAGAGGCCAATGGTTCTTTTATCTATAACGTAAGTTCTGCCAACAAGGATGCTAAGCATAAACATCGTGTAAGAGGAAGAGAGGACGACGAGTCTGAACATCCTAGCCAAGCCTCAATAGGAAAGAAGCTTTGGGAGTTGGGACTTGATCATAACATAAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042651 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

294

Amino Acids

34.48

Weight (kDa)

9.03

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12470
fragaria_vesca	FvH4_3g28550 FvH4_3g28550 FvH4_3g28550 FvH4_7g01660 FvH4_7g01660
malus_domestica	MD02G1301900.v1.1 MD03G1172700.v1.1 MD07G1022100.v1.1 MD07G1022200.v1.1 MD11G1190600.v1.1
prunus_persica	Prupe.2G022300_v2.0.a1 Prupe.4G253900_v2.0.a1
pyrus_communis	pycom02g25410 pycom03g12990 pycom07g01680 pycom11g16650
rosa_chinensis	RchiOBHm_Chr1g0317941 RchiOBHm_Chr5g0052771
rosa_laevigata	RLG00000030572 RLG00000034800
rosa_multiflora	Rmu_co8100628.1_g000001 Rmu_co8460597.1_g000001 Rmu_sc0010119.1_g000003 Rmu_sc0011424.1_g000037 Rmu_sc0014026.1_g000003 Rmu_ssc0000008.1_g000032
rosa_roxburghii	Rroxscaffold_1G00028580 Rroxscaffold_4G00330080
rosa_rugosa	Rorug01G0018600 Rorug01G0018700 Rorug05G0270000
rosa_samantha	Rh1AG030400 Rh1BG026800 Rh1CG029100 Rh1DG041100 Rh5AG342000 Rh5BG352600 Rh5CG379300 Rh5DG369000
rosa_wichuraiana	Rw0G017390 Rw1G002300 Rw5G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	3 cut(s)	8, 11, 139
AcsI	RAATTY	3 cut(s)	187, 206, 691
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	5 cut(s)	46, 176, 212, 286, 492
AhdI	GACNNNNNGTC	1 cut(s)	808
AjuI	GAANNNNNNNTTGG	2 cut(s)	832, 864
AluBI	AGCT	9 cut(s)	49, 61, 91, 111, 166, 271, 415, 424, 847
AluI	AGCT	9 cut(s)	49, 61, 91, 111, 166, 271, 415, 424, 847
Alw21I	GWGCWC	2 cut(s)	328, 395
Alw26I	GTCTC	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	2 cut(s)	237, 723
ApeKI	GCWGC	2 cut(s)	88, 677
ApoI	RAATTY	3 cut(s)	187, 206, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	197
AsuC2I	CCSGG	2 cut(s)	615, 649
AsuHPI	GGTGA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	694
Bbv12I	GWGCWC	2 cut(s)	328, 395
BbvI	GCAGC	2 cut(s)	100, 664
BcgI	CGANNNNNNTGC	2 cut(s)	764, 798
BclI	TGATCA	2 cut(s)	117, 865
BcnI	CCSGG	2 cut(s)	615, 649
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	822
BfrI	CTTAAG	1 cut(s)	470
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	3 cut(s)	9, 89, 678
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	3 cut(s)	10, 90, 679
Bme1390I	CCNGG	2 cut(s)	615, 649
BmeRI	GACNNNNNGTC	1 cut(s)	808
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	2 cut(s)	615, 649
BmsI	GCATC	3 cut(s)	126, 526, 757
BpiI	GAAGAC	1 cut(s)	694
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	615, 649
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	27, 240, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	687
BseDI	CCNNGG	3 cut(s)	27, 240, 648
BseGI	GGATG	4 cut(s)	19, 120, 772, 817
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	4 cut(s)	86, 181, 638, 698
BseXI	GCAGC	2 cut(s)	100, 664
BshFI	GGCC	2 cut(s)	239, 725
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	328, 395
BsiSI	CCGG	2 cut(s)	614, 648
BslFI	GGGAC	2 cut(s)	464, 873
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	2 cut(s)	464, 873
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	239, 725
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	328, 395
Bsp143I	GATC	5 cut(s)	117, 200, 329, 495, 865
Bsp1720I	GCTNAGC	1 cut(s)	771
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	8, 11, 139
BspANI	GGCC	2 cut(s)	239, 725
BspCNI	CTCAG	4 cut(s)	87, 180, 637, 699
BspLI	GGNNCC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	687
BssECI	CCNNGG	3 cut(s)	27, 240, 648
BssMI	GATC	5 cut(s)	117, 200, 329, 495, 865
BssT1I	CCWWGG	2 cut(s)	27, 240
Bst4CI	ACNGT	1 cut(s)	582
Bst6I	CTCTTC	3 cut(s)	30, 251, 790
BstAFI	CTTAAG	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	22, 366
BstDEI	CTNAG	5 cut(s)	95, 167, 624, 707, 771
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	19, 120, 772, 817
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	5 cut(s)	120, 203, 332, 498, 868
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	5 cut(s)	117, 200, 329, 495, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 332, 421
BstSCI	CCNGG	2 cut(s)	613, 647
BstV1I	GCAGC	2 cut(s)	100, 664
BstV2I	GAAGAC	1 cut(s)	694
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	239, 725
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	4 cut(s)	19, 120, 772, 817
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	22, 366
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	197
CviAII	CATG	2 cut(s)	28, 296
DdeI	CTNAG	5 cut(s)	95, 167, 624, 707, 771
DpnI	GATC	5 cut(s)	119, 202, 331, 497, 867
DpnII	GATC	5 cut(s)	117, 200, 329, 495, 865
DriI	GACNNNNNGTC	1 cut(s)	808
Eam1104I	CTCTTC	3 cut(s)	30, 251, 790
Eam1105I	GACNNNNNGTC	1 cut(s)	808
EarI	CTCTTC	3 cut(s)	30, 251, 790
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	27, 240
Eco147I	AGGCCT	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	239
EcoT14I	CCWWGG	2 cut(s)	27, 240
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	27, 240
FaeI	CATG	2 cut(s)	31, 299
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 224, 256
FaqI	GGGAC	2 cut(s)	464, 873
FatI	CATG	2 cut(s)	27, 295
FauI	CCCGC	1 cut(s)	132
FbaI	TGATCA	2 cut(s)	117, 865
Fnu4HI	GCNGC	3 cut(s)	9, 89, 678
FokI	GGATG	4 cut(s)	26, 127, 779, 804
Fsp4HI	GCNGC	3 cut(s)	9, 89, 678
FspBI	CTAG	1 cut(s)	822
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	3 cut(s)	9, 89, 678
HaeIII	GGCC	2 cut(s)	239, 725
HapII	CCGG	2 cut(s)	614, 648
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	31, 299
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HindIII	AAGCTT	3 cut(s)	47, 59, 845
HinfI	GANTC	2 cut(s)	525, 809
HpaII	CCGG	2 cut(s)	614, 648
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	3 cut(s)	263, 529, 578
Hpy188I	TCNGA	6 cut(s)	170, 205, 433, 524, 627, 814
Hpy188III	TCNNGA	2 cut(s)	94, 706
Hpy8I	GTNNAC	3 cut(s)	263, 529, 578
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	582
HpyCH4IV	ACGT	3 cut(s)	265, 699, 747
HpyCH4V	TGCA	3 cut(s)	539, 598, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 332, 421
HpyF3I	CTNAG	5 cut(s)	95, 167, 624, 707, 771
HpySE526I	ACGT	3 cut(s)	265, 699, 747
Hsp92II	CATG	2 cut(s)	31, 299
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	2 cut(s)	117, 865
Kzo9I	GATC	5 cut(s)	117, 200, 329, 495, 865
LmnI	GCTCC	5 cut(s)	85, 96, 124, 323, 525
LpnPI	CCDG	8 cut(s)	6, 97, 107, 401, 541, 627, 661, 719
Lsp1109I	GCAGC	2 cut(s)	100, 664
LweI	GCATC	3 cut(s)	126, 526, 757
MaeI	CTAG	1 cut(s)	822
MaeII	ACGT	3 cut(s)	265, 699, 747
MalI	GATC	5 cut(s)	119, 202, 331, 497, 867
MboI	GATC	5 cut(s)	117, 200, 329, 495, 865
MboII	GAAGA	5 cut(s)	47, 161, 268, 694, 807
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	328, 395
MluCI	AATT	8 cut(s)	171, 187, 206, 371, 438, 454, 669, 691
MlyI	GAGTC	2 cut(s)	534, 818
MnlI	CCTC	8 cut(s)	10, 31, 175, 229, 715, 785, 793, 841
Mph1103I	ATGCAT	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	5 cut(s)	51, 353, 471, 584, 696
MslI	CAYNNNNRTG	2 cut(s)	300, 534
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	2 cut(s)	614, 648
MspR9I	CCNGG	2 cut(s)	615, 649
Mva1269I	GAATGC	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	17, 332, 421
NciI	CCSGG	2 cut(s)	615, 649
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	5 cut(s)	117, 200, 329, 495, 865
NlaIII	CATG	2 cut(s)	31, 299
NlaIV	GGNNCC	1 cut(s)	25
NsbI	TGCGCA	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	10, 90, 679
PleI	GAGTC	2 cut(s)	533, 817
PpsI	GAGTC	2 cut(s)	533, 817
PspN4I	GGNNCC	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	200
RseI	CAYNNNNRTG	2 cut(s)	300, 534
SaqAI	TTAA	5 cut(s)	51, 353, 471, 584, 696
SatI	GCNGC	3 cut(s)	9, 89, 678
Sau3AI	GATC	5 cut(s)	117, 200, 329, 495, 865
SchI	GAGTC	2 cut(s)	534, 818
ScrFI	CCNGG	2 cut(s)	615, 649
SduI	GDGCHC	2 cut(s)	328, 395
SfaNI	GCATC	3 cut(s)	126, 526, 757
SmiMI	CAYNNNNRTG	2 cut(s)	300, 534
SmlI	CTYRAG	2 cut(s)	230, 470
SmoI	CTYRAG	2 cut(s)	230, 470
Sse9I	AATT	8 cut(s)	171, 187, 206, 371, 438, 454, 669, 691
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	8, 11, 139
SspI	AATATT	1 cut(s)	488
SspMI	CTAG	1 cut(s)	822
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	613, 647
StyI	CCWWGG	2 cut(s)	27, 240
TaaI	ACNGT	1 cut(s)	582
TaiI	ACGT	3 cut(s)	268, 702, 750
TaqI	TCGA	1 cut(s)	78
TasI	AATT	8 cut(s)	171, 187, 206, 371, 438, 454, 669, 691
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	5 cut(s)	51, 353, 471, 584, 696
Tru9I	TTAA	5 cut(s)	51, 353, 471, 584, 696
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	2 cut(s)	88, 677
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	505
Vha464I	CTTAAG	1 cut(s)	470
XapI	RAATTY	3 cut(s)	187, 206, 691
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	822
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.