Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002218

Physical Location & Seq

Genomic Coordinates Forward (+)

1321860 .. 1326202

Gene Structure 4343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGTAGCAGTCACCACCATCTCCAACTTCGCCACCTTTCACTCTCAGTTTCTCCCTTCACCAACCAACCCCCACCATTTCTCTTTATCCCCAAAAAACTTCACTCTCACCATCGTCACCCGCACTAACATCACCGCAACTCCCTCCCTCCGACTCACAGCCTCCCGCCTCACCCGATCCCGCCTCGCCTCCGCCGCATACGGTGGTGAACCCCCCGCAGGAGGAGGCGGAGACGGCGGAAGCGGAGGTAATGATAACGATGACAGTGATGGGAGTGGTGATGGTGATGAGGACCGGGATCGGAACAAGGCGGAGGCGGGGAGGTCGTCGGAGAGTCTGCCAAAGGACTTAGCGGCGGCCATAAAGGCCGGGCGGGTGCCGGGCTTGATTGTGAAGAGGTTCTTTGAGCTGGAGAAGTCGGCGGTGTTCAGATGGTTGCTTGGGTTTGATGGGTTCAAGGAGCGGTTGCTTGCGGACGACTTGTTCTTGACTAAAGTTGGCATCGAGTGCGGCGTTGGAATATTCACTAAGACTGCTGCAGAATTGGAGCGGCGCCGAGAAAATTTTACCAAAGAGCTGGATTTTGTTTTTGCTGATGTGGTGATGGCCATCATAGCTGATTTTATGCTTGTCTGGCTTCCCGCTCCTACTGTTTCGCTTCGACCACCTCTTGCTGTCAGCGCAGGCCGTATTGCTAAGTTCTTCTATGGGTGTCCGGATAATGCTTTCCAGGTAGCTTTGTCTGGAACATCGTACTCACTCTTACAGAGAATAGGTGCAATAGTGAGAAATGGAGCTAAACTATTTGCAGTTGGGACTGGTGCATCTCTGGTTGGTACGGGTGTAACAAATGCATTGATTAATGCACGAAAAGCTCTCGATAAATCCTTTGCTGGTGAAGCTGAGGATGTTCCCATATTATCAACCAGTGTAGCCTATGGAGTTTATATGGCAGTTTCTAGCAATCTAAGGTACCAAGTTCTCGCGGGAGTAATTGAACAGCGACTTCTGGAACCCTTGCTGCACCAGCACAAGCTTATACTGAGTGCAATTTGCTTTGCTGTTCGAACTGGCAACACGTTCTTGGGTTCCTTGATGTGGGTCGATTATGCACGTTGGATTGGAATTCAAAAGATCCGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

382

Amino Acids

41.01

Weight (kDa)

8.9

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12470
fragaria_vesca	FvH4_3g28550 FvH4_3g28550 FvH4_3g28550 FvH4_7g01660 FvH4_7g01660
malus_domestica	MD02G1301900.v1.1 MD03G1172700.v1.1 MD07G1022100.v1.1 MD07G1022200.v1.1 MD11G1190600.v1.1
prunus_persica	Prupe.2G022300_v2.0.a1 Prupe.4G253900_v2.0.a1
pyrus_communis	pycom02g25410 pycom03g12990 pycom07g01680 pycom11g16650
rosa_chinensis	RchiOBHm_Chr1g0317941 RchiOBHm_Chr5g0052771
rosa_laevigata	RLG00000030572 RLG00000034800
rosa_multiflora	Rmu_co8100628.1_g000001 Rmu_co8460597.1_g000001 Rmu_sc0010119.1_g000003 Rmu_sc0011424.1_g000037 Rmu_sc0014026.1_g000003 Rmu_ssc0000008.1_g000032
rosa_roxburghii	Rroxscaffold_1G00028580 Rroxscaffold_4G00330080
rosa_rugosa	Rorug01G0018600 Rorug01G0018700 Rorug05G0270000
rosa_samantha	Rh1AG030400 Rh1BG026800 Rh1CG029100 Rh1DG041100 Rh5AG342000 Rh5BG352600 Rh5CG379300 Rh5DG369000
rosa_wichuraiana	Rw0G017390 Rw1G002300 Rw5G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	972
AccB1I	GGYRCC	3 cut(s)	376, 552, 972
AccBSI	CCGCTC	3 cut(s)	463, 550, 644
AccII	CGCG	1 cut(s)	986
AccIII	TCCGGA	1 cut(s)	715
AclWI	GGATC	3 cut(s)	171, 306, 1129
AcoI	YGGCCR	2 cut(s)	357, 606
AcsI	RAATTY	2 cut(s)	562, 1125
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	3 cut(s)	755, 838, 974
AfiI	CCNNNNNNNGG	3 cut(s)	218, 221, 1098
AflIII	ACRYGT	1 cut(s)	1077
AgsI	TTSAA	3 cut(s)	457, 998, 1130
AjnI	CCWGG	1 cut(s)	729
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	8 cut(s)	409, 577, 617, 737, 797, 875, 902, 1036
AluI	AGCT	8 cut(s)	409, 577, 617, 737, 797, 875, 902, 1036
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	3 cut(s)	171, 306, 1129
Aor13HI	TCCGGA	1 cut(s)	715
AoxI	GGCC	4 cut(s)	357, 366, 606, 685
ApeKI	GCWGC	2 cut(s)	536, 1021
ApoI	RAATTY	2 cut(s)	562, 1125
AseI	ATTAAT	1 cut(s)	861
Asp700I	GAANNNNTTC	1 cut(s)	398
Asp718I	GGTACC	1 cut(s)	972
AspLEI	GCGC	2 cut(s)	555, 683
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	3 cut(s)	296, 370, 381
AsuII	TTCGAA	1 cut(s)	1066
AvaII	GGWCC	1 cut(s)	292
BaeI	ACNNNNGTAYC	2 cut(s)	828, 861
BalI	TGGCCA	1 cut(s)	608
BanI	GGYRCC	3 cut(s)	376, 552, 972
BbvCI	CCTCAGC	1 cut(s)	903
BbvI	GCAGC	2 cut(s)	523, 1008
BccI	CCATC	8 cut(s)	26, 119, 263, 275, 426, 443, 598, 617
BceAI	ACGGC	2 cut(s)	250, 672
BciT130I	CCWGG	1 cut(s)	731
BcnI	CCSGG	3 cut(s)	296, 370, 381
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	960
BfmI	CTRYAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	7 cut(s)	195, 354, 357, 511, 537, 551, 1022
BlsI	GCNGC	7 cut(s)	196, 355, 358, 512, 538, 552, 1023
Bme1390I	CCNGG	4 cut(s)	296, 370, 381, 731
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	5 cut(s)	378, 554, 974, 1014, 1090
BmrFI	CCNGG	4 cut(s)	296, 370, 381, 731
BmsI	GCATC	2 cut(s)	510, 833
BpmI	CTGGAG	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	903
Bpu14I	TTCGAA	1 cut(s)	1066
BpuMI	CCSGG	3 cut(s)	296, 370, 381
BsaBI	GATNNNNATC	1 cut(s)	608
BsaHI	GRCGYC	1 cut(s)	553
BsaWI	WCCGGW	1 cut(s)	715
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 221, 1098
Bse1I	ACTGG	3 cut(s)	823, 927, 1075
Bse8I	GATNNNNATC	1 cut(s)	608
BseAI	TCCGGA	1 cut(s)	715
BseBI	CCWGG	1 cut(s)	731
BseGI	GGATG	1 cut(s)	913
BseJI	GATNNNNATC	1 cut(s)	608
BseLI	CCNNNNNNNGG	3 cut(s)	218, 221, 1098
BseMII	CTCAG	3 cut(s)	59, 894, 1034
BseNI	ACTGG	3 cut(s)	823, 927, 1075
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	523, 1008
BsgI	GTGCAG	1 cut(s)	1007
Bsh1236I	CGCG	1 cut(s)	986
BshFI	GGCC	4 cut(s)	359, 368, 608, 687
BshNI	GGYRCC	3 cut(s)	376, 552, 972
BsiSI	CCGG	4 cut(s)	295, 369, 380, 716
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	3 cut(s)	218, 221, 1098
BsmAI	GTCTC	1 cut(s)	225
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	829
BsnI	GGCC	4 cut(s)	359, 368, 608, 687
Bsp119I	TTCGAA	1 cut(s)	1066
Bsp13I	TCCGGA	1 cut(s)	715
Bsp143I	GATC	3 cut(s)	176, 298, 1134
BspANI	GGCC	4 cut(s)	359, 368, 608, 687
BspCNI	CTCAG	3 cut(s)	58, 895, 1035
BspEI	TCCGGA	1 cut(s)	715
BspFNI	CGCG	1 cut(s)	986
BspLI	GGNNCC	5 cut(s)	378, 554, 974, 1014, 1090
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	3 cut(s)	171, 306, 1129
BspT104I	TTCGAA	1 cut(s)	1066
BspT107I	GGYRCC	3 cut(s)	376, 552, 972
BsrBI	CCGCTC	3 cut(s)	463, 550, 644
BsrI	ACTGG	3 cut(s)	823, 927, 1075
BssMI	GATC	3 cut(s)	176, 298, 1134
BssNI	GRCGYC	1 cut(s)	553
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	3 cut(s)	203, 266, 652
Bst6I	CTCTTC	1 cut(s)	389
BstACI	GRCGYC	1 cut(s)	553
BstAPI	GCANNNNNTGC	1 cut(s)	507
BstBI	TTCGAA	1 cut(s)	1066
BstC8I	GCNNGC	2 cut(s)	471, 685
BstDEI	CTNAG	7 cut(s)	45, 349, 528, 696, 903, 968, 1043
BstF5I	GGATG	1 cut(s)	913
BstFNI	CGCG	1 cut(s)	986
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	555, 683
BstKTI	GATC	3 cut(s)	179, 301, 1137
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	3 cut(s)	176, 298, 1134
BstNI	CCWGG	1 cut(s)	731
BstSCI	CCNGG	4 cut(s)	294, 368, 379, 729
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	986
BstV1I	GCAGC	2 cut(s)	523, 1008
BstX2I	RGATCY	1 cut(s)	1134
BstXI	CCANNNNNNTGG	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	1134
BsuRI	GGCC	4 cut(s)	359, 368, 608, 687
BtsCI	GGATG	1 cut(s)	913
BtsIMutI	CAGTG	2 cut(s)	271, 934
Cac8I	GCNNGC	2 cut(s)	471, 685
CfoI	GCGC	2 cut(s)	555, 683
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	754, 837, 973
CviQI	GTAC	3 cut(s)	754, 837, 973
DdeI	CTNAG	7 cut(s)	45, 349, 528, 696, 903, 968, 1043
DinI	GGCGCC	1 cut(s)	554
DpnI	GATC	3 cut(s)	178, 300, 1136
DpnII	GATC	3 cut(s)	176, 298, 1134
EaeI	YGGCCR	2 cut(s)	357, 606
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
EciI	GGCGGA	4 cut(s)	181, 243, 252, 326
Eco47I	GGWCC	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	1125
EcoRII	CCWGG	1 cut(s)	729
EcoT22I	ATGCAT	1 cut(s)	856
EgeI	GGCGCC	1 cut(s)	554
EheI	GGCGCC	1 cut(s)	554
Esp3I	CGTCTC	1 cut(s)	225
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	1 cut(s)	829
FauI	CCCGC	8 cut(s)	128, 173, 188, 223, 310, 366, 649, 979
Fnu4HI	GCNGC	7 cut(s)	195, 354, 357, 511, 537, 551, 1022
FokI	GGATG	1 cut(s)	920
Fsp4HI	GCNGC	7 cut(s)	195, 354, 357, 511, 537, 551, 1022
FspBI	CTAG	1 cut(s)	960
GlaI	GCGC	2 cut(s)	554, 682
GluI	GCNGC	7 cut(s)	195, 354, 357, 511, 537, 551, 1022
GsuI	CTGGAG	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	4 cut(s)	359, 368, 608, 687
HapII	CCGG	4 cut(s)	295, 369, 380, 716
HhaI	GCGC	2 cut(s)	555, 683
Hin1I	GRCGYC	1 cut(s)	553
Hin6I	GCGC	2 cut(s)	553, 681
HinP1I	GCGC	2 cut(s)	553, 681
HindIII	AAGCTT	1 cut(s)	1034
HinfI	GANTC	2 cut(s)	153, 334
HpaII	CCGG	4 cut(s)	295, 369, 380, 716
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	5 cut(s)	152, 303, 331, 431, 1139
Hpy188III	TCNNGA	5 cut(s)	487, 716, 744, 878, 1010
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	3 cut(s)	203, 266, 652
HpyCH4IV	ACGT	2 cut(s)	1079, 1114
HpyCH4V	TGCA	9 cut(s)	539, 779, 809, 824, 854, 866, 1024, 1049, 1112
HpyF3I	CTNAG	7 cut(s)	45, 349, 528, 696, 903, 968, 1043
HpySE526I	ACGT	2 cut(s)	1079, 1114
Hsp92I	GRCGYC	1 cut(s)	553
HspAI	GCGC	2 cut(s)	553, 681
KasI	GGCGCC	1 cut(s)	552
Kpn2I	TCCGGA	1 cut(s)	715
KpnI	GGTACC	1 cut(s)	976
Kzo9I	GATC	3 cut(s)	176, 298, 1134
LmnI	GCTCC	4 cut(s)	460, 547, 649, 794
Lsp1109I	GCAGC	2 cut(s)	523, 1008
LweI	GCATC	2 cut(s)	510, 833
MaeI	CTAG	1 cut(s)	960
MaeII	ACGT	2 cut(s)	1079, 1114
MaeIII	GTNAC	3 cut(s)	10, 115, 844
MalI	GATC	3 cut(s)	178, 300, 1136
MbiI	CCGCTC	3 cut(s)	463, 550, 644
MboI	GATC	3 cut(s)	176, 298, 1134
MboII	GAAGA	2 cut(s)	406, 694
MflI	RGATCY	1 cut(s)	1134
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	5 cut(s)	542, 562, 993, 1050, 1125
MluNI	TGGCCA	1 cut(s)	608
Mly113I	GGCGCC	1 cut(s)	553
MlyI	GAGTC	2 cut(s)	147, 343
MmeI	TCCRAC	5 cut(s)	48, 175, 309, 496, 1097
Mox20I	TGGCCA	1 cut(s)	608
Mph1103I	ATGCAT	1 cut(s)	856
MroI	TCCGGA	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	1 cut(s)	861
Msp20I	TGGCCA	1 cut(s)	608
MspI	CCGG	4 cut(s)	295, 369, 380, 716
MspR9I	CCNGG	4 cut(s)	296, 370, 381, 731
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	986
NarI	GGCGCC	1 cut(s)	553
NciI	CCSGG	3 cut(s)	296, 370, 381
NdeII	GATC	3 cut(s)	176, 298, 1134
NlaIV	GGNNCC	5 cut(s)	378, 554, 974, 1014, 1090
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	2 cut(s)	10, 115
NsiI	ATGCAT	1 cut(s)	856
NspV	TTCGAA	1 cut(s)	1066
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	398
PkrI	GCNGC	7 cut(s)	196, 355, 358, 512, 538, 552, 1023
PleI	GAGTC	2 cut(s)	147, 342
PluTI	GGCGCC	1 cut(s)	556
PpsI	GAGTC	2 cut(s)	147, 342
PshBI	ATTAAT	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	5 cut(s)	378, 554, 974, 1014, 1090
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	1134
RsaI	GTAC	3 cut(s)	755, 838, 974
RsaNI	GTAC	3 cut(s)	754, 837, 973
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	7 cut(s)	195, 354, 357, 511, 537, 551, 1022
Sau3AI	GATC	3 cut(s)	176, 298, 1134
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	2 cut(s)	147, 343
ScrFI	CCNGG	4 cut(s)	296, 370, 381, 731
SfaNI	GCATC	2 cut(s)	510, 833
SfcI	CTRYAG	1 cut(s)	537
SfiI	GGCCNNNNNGGCC	1 cut(s)	365
SfoI	GGCGCC	1 cut(s)	554
SfuI	TTCGAA	1 cut(s)	1066
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	5 cut(s)	542, 562, 993, 1050, 1125
SspDI	GGCGCC	1 cut(s)	552
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	1 cut(s)	960
StyD4I	CCNGG	4 cut(s)	294, 368, 379, 729
TaaI	ACNGT	3 cut(s)	203, 266, 652
TaiI	ACGT	2 cut(s)	1082, 1117
TaqI	TCGA	5 cut(s)	504, 661, 879, 1066, 1104
TasI	AATT	5 cut(s)	542, 562, 993, 1050, 1125
TauI	GCSGC	5 cut(s)	197, 356, 359, 513, 553
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	2 cut(s)	271, 934
TseFI	GTSAC	2 cut(s)	10, 115
TseI	GCWGC	2 cut(s)	536, 1021
Tsp45I	GTSAC	2 cut(s)	10, 115
TspRI	CASTG	2 cut(s)	271, 934
VpaK11BI	GGWCC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	2 cut(s)	562, 1125
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	960
Zsp2I	ATGCAT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.