Prupe.4G253900_v2.0.a1

Protein RETICULATA-related

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
17427614 .. 17432448
4835 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G253900.1

Sequence Viewer

Length: 1155 bp
ATGGCGATCTCCTTGTGCTTCACACCCGCCTCCACCTCCTCATCCTCATCCTCATCCTCTCTCTCCAAACTCAATCCCCACCGTCCATCTCTACCCTCCGCATCGCCCCTCCTCCACCTCCGCCTCACTGTAACCCCTCCCTCCCTCACCCACCGCCACCGCCAGTTCCGCCAGGTCCTATTCTCCACCGGCAGCGGAGACGGAGGCATCAACGGCCGCGACTCTTCCGGAGGTGGCGGCGGGGGCGGGGATGATGGCGACACCAACGGCGGTTCGGACAATGCAGGCGGGAAGAACTTGGCGGAGGCCTTGTTGGTGTTGGCGGAGTCTAAGCGGGGCTTGGAGAGCTTGCCCAAGGACCTGGCCGCCGCGATCCAGGCGGGTCGGATCCCCGGGTCAGTTGTGACCCGGTACTTCGAGCTGGAGAAGTCGGGGCTTTTCAAGTGGTTGATGCAATTCGCTGGGTTCAGAGAGAGGCTGCTGGCCGATGATCTTTTTTTCGCTAAGGTCTTCATGGAATGCGGCGTTGGTCTCTTCACTAAGACTGCTGCGGAGTACCAGCGTCGCGGAGAGAACTTTTTCAATGAGCTTGAAGTTGTTTTTGCAGATGTGGTAATGGCCATCATTGCAGATTTCATGCTTGTATATCTTCCAGCACCAACTGTCTCTCTCCGACCTCCACTTGCACTCAATGCAGGAGCAATCACTAAGTTTTTCCATGGCTGCCCTGATAATGCCTTCCAGATCGCTCTCTCTGGAACATCATACTCATTACTACAGAGGATTGGTGGAGTAGTGAGAAACGGGGCCAAGCTCTTTGCTGTTGGTACTGCTTCCTCACTGGTTGGGACAGCTGTGACAAATGCGTTGATCAATGCAAGGAAGGCTGTTGATAAGGACAAAGCAGGTGAAATTGAGAATGTGCCTATAGTATCCACTAGCGTTGCATATGGTGTCTACATGGCAGTTTCTAGCAATCTCAGGTACCAAGTATTGGCCGGTGTTATTGAACAAAGGTGTTTGGAACCGCTACTACATAAACACAAGCTCATGCTAAGTGCAATTTGCTTTGCCGTTCGGACTGGCAACACGTTCTTGGGTTCATTATTGTGGGTGGACTATGCTCGTATGATAGGAATTCAGAAAGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

385

Amino Acids

40.9

Weight (kDa)

9.16

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 896
Acc36I ACCTGC 1 cut(s) 896
Acc65I GGTACC 1 cut(s) 984
AccB1I GGYRCC 1 cut(s) 984
AccB7I CCANNNNNTGG 1 cut(s) 994
AccI GTMKAC 1 cut(s) 957
AccII CGCG 3 cut(s) 219, 371, 567
AccIII TCCGGA 1 cut(s) 227
AclWI GGATC 3 cut(s) 367, 382, 395
AcoI YGGCCR 5 cut(s) 214, 363, 483, 618, 996
AcsI RAATTY 1 cut(s) 1137
AfaI GTAC 4 cut(s) 413, 557, 829, 986
AfiI CCNNNNNNNGG 1 cut(s) 994
AflIII ACRYGT 1 cut(s) 1089
AgsI TTSAA 4 cut(s) 442, 583, 593, 1010
AjnI CCWGG 3 cut(s) 171, 360, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AluBI AGCT 7 cut(s) 348, 421, 589, 814, 854, 1048, 1148
AluI AGCT 7 cut(s) 348, 421, 589, 814, 854, 1048, 1148
Alw26I GTCTC 3 cut(s) 192, 536, 670
AlwI GGATC 3 cut(s) 367, 382, 395
Ama87I CYCGRG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 227
AoxI GGCC 7 cut(s) 214, 306, 363, 483, 618, 807, 996
ApeKI GCWGC 4 cut(s) 192, 478, 548, 723
ApoI RAATTY 1 cut(s) 1137
Asp700I GAANNNNTTC 1 cut(s) 578
Asp718I GGTACC 1 cut(s) 984
AspS9I GGNCC 3 cut(s) 175, 358, 807
AsuC2I CCSGG 3 cut(s) 393, 394, 409
AsuHPI GGTGA 2 cut(s) 139, 920
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 2 cut(s) 175, 358
BalI TGGCCA 1 cut(s) 620
BamHI GGATCC 1 cut(s) 387
BanI GGYRCC 1 cut(s) 984
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 4 cut(s) 204, 465, 535, 710
BccI CCATC 3 cut(s) 94, 248, 629
BceAI ACGGC 3 cut(s) 229, 283, 1058
BciT130I CCWGG 3 cut(s) 173, 362, 377
BciVI GTATCC 1 cut(s) 943
BclI TGATCA 1 cut(s) 870
BcnI CCSGG 3 cut(s) 393, 394, 409
BcoDI GTCTC 3 cut(s) 192, 536, 670
BfaI CTAG 2 cut(s) 939, 972
BfmI CTRYAG 2 cut(s) 776, 927
BfuAI ACCTGC 1 cut(s) 896
BfuI GTATCC 1 cut(s) 943
BisI GCNGC 9 cut(s) 193, 217, 238, 366, 369, 479, 523, 549, 724
BlsI GCNGC 9 cut(s) 194, 218, 239, 367, 370, 480, 524, 550, 725
Bme1390I CCNGG 6 cut(s) 173, 362, 377, 393, 394, 409
Bme18I GGWCC 2 cut(s) 175, 358
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 175, 358, 807
BmiI GGNNCC 4 cut(s) 389, 808, 986, 1026
BmrFI CCNGG 6 cut(s) 173, 362, 377, 393, 394, 409
BmsI GCATC 3 cut(s) 110, 216, 441
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 504
BpuMI CCSGG 3 cut(s) 393, 394, 409
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 4 cut(s) 354, 391, 392, 718
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 994
Bse118I RCCGGY 2 cut(s) 188, 998
Bse1I ACTGG 3 cut(s) 163, 846, 1087
Bse3DI GCAATG 1 cut(s) 624
BseAI TCCGGA 1 cut(s) 227
BseBI CCWGG 3 cut(s) 173, 362, 377
BseDI CCNNGG 4 cut(s) 354, 391, 392, 718
BseGI GGATG 4 cut(s) 41, 47, 53, 256
BseLI CCNNNNNNNGG 1 cut(s) 994
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 1 cut(s) 994
BseNI ACTGG 3 cut(s) 163, 846, 1087
BseRI GAGGAG 2 cut(s) 28, 101
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 4 cut(s) 204, 465, 535, 710
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 3 cut(s) 219, 371, 567
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 7 cut(s) 216, 308, 365, 485, 620, 809, 998
BshNI GGYRCC 1 cut(s) 984
BsiEI CGRYCG 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 5 cut(s) 189, 228, 393, 409, 999
BslFI GGGAC 1 cut(s) 862
BslI CCNNNNNNNGG 1 cut(s) 994
BsmAI GTCTC 3 cut(s) 192, 536, 670
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 862
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 7 cut(s) 216, 308, 365, 485, 620, 809, 998
Bso31I GGTCTC 1 cut(s) 536
BsoBI CYCGRG 1 cut(s) 392
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 6 cut(s) 6, 372, 387, 490, 744, 870
Bsp19I CCATGG 1 cut(s) 718
BspANI GGCC 7 cut(s) 216, 308, 365, 485, 620, 809, 998
BspCNI CTCAG 1 cut(s) 993
BspEI TCCGGA 1 cut(s) 227
BspFNI CGCG 3 cut(s) 219, 371, 567
BspLI GGNNCC 4 cut(s) 389, 808, 986, 1026
BspMI ACCTGC 1 cut(s) 896
BspPI GGATC 3 cut(s) 367, 382, 395
BspT107I GGYRCC 1 cut(s) 984
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 2 cut(s) 188, 998
BsrI ACTGG 3 cut(s) 163, 846, 1087
BssAI RCCGGY 2 cut(s) 188, 998
BssECI CCNNGG 4 cut(s) 354, 391, 392, 718
BssMI GATC 6 cut(s) 6, 372, 387, 490, 744, 870
BssT1I CCWWGG 2 cut(s) 354, 718
Bst2UI CCWGG 3 cut(s) 173, 362, 377
Bst4CI ACNGT 3 cut(s) 83, 130, 664
Bst6I CTCTTC 2 cut(s) 229, 539
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 3 cut(s) 286, 350, 483
BstDEI CTNAG 6 cut(s) 330, 504, 540, 708, 980, 1055
BstDSI CCRYGG 1 cut(s) 718
BstF5I GGATG 4 cut(s) 41, 47, 53, 256
BstFNI CGCG 3 cut(s) 219, 371, 567
BstKTI GATC 6 cut(s) 9, 375, 390, 493, 747, 873
BstMAI GTCTC 3 cut(s) 192, 536, 670
BstMBI GATC 6 cut(s) 6, 372, 387, 490, 744, 870
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 8 cut(s) 168, 213, 243, 345, 377, 626, 692, 884
BstNI CCWGG 3 cut(s) 173, 362, 377
BstSCI CCNGG 6 cut(s) 171, 360, 375, 391, 392, 407
BstSFI CTRYAG 2 cut(s) 776, 927
BstUI CGCG 3 cut(s) 219, 371, 567
BstV1I GCAGC 4 cut(s) 204, 465, 535, 710
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 387
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 1 cut(s) 387
BstZI CGGCCG 1 cut(s) 214
BsuI GTATCC 1 cut(s) 943
BsuRI GGCC 7 cut(s) 216, 308, 365, 485, 620, 809, 998
BtgI CCRYGG 1 cut(s) 718
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 4 cut(s) 41, 47, 53, 256
BtsIMutI CAGTG 2 cut(s) 126, 839
BveI ACCTGC 1 cut(s) 896
Cac8I GCNNGC 3 cut(s) 286, 350, 483
Cfr10I RCCGGY 2 cut(s) 188, 998
Cfr13I GGNCC 3 cut(s) 175, 358, 807
Cfr9I CCCGGG 1 cut(s) 392
CseI GACGC 1 cut(s) 551
Csp6I GTAC 4 cut(s) 412, 556, 828, 985
CspCI CAANNNNNGTGG 2 cut(s) 925, 960
CviAII CATG 5 cut(s) 514, 637, 719, 961, 1051
CviQI GTAC 4 cut(s) 412, 556, 828, 985
DdeI CTNAG 6 cut(s) 330, 504, 540, 708, 980, 1055
DpnI GATC 6 cut(s) 8, 374, 389, 492, 746, 872
DpnII GATC 6 cut(s) 6, 372, 387, 490, 744, 870
EaeI YGGCCR 5 cut(s) 214, 363, 483, 618, 996
EagI CGGCCG 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 229, 539
EarI CTCTTC 2 cut(s) 229, 539
EciI GGCGGA 4 cut(s) 110, 158, 317, 338
EclXI CGGCCG 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 354, 718
Eco147I AGGCCT 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 2 cut(s) 175, 358
Eco52I CGGCCG 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 175, 358
EcoRI GAATTC 1 cut(s) 1137
EcoRII CCWGG 3 cut(s) 171, 360, 375
EcoT14I CCWWGG 2 cut(s) 354, 718
ErhI CCWWGG 2 cut(s) 354, 718
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 5 cut(s) 517, 640, 722, 964, 1054
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 862
FatI CATG 5 cut(s) 513, 636, 718, 960, 1050
FauI CCCGC 6 cut(s) 34, 233, 239, 281, 327, 373
FauNDI CATATG 1 cut(s) 949
FbaI TGATCA 1 cut(s) 870
FblI GTMKAC 1 cut(s) 957
Fnu4HI GCNGC 9 cut(s) 193, 217, 238, 366, 369, 479, 523, 549, 724
FokI GGATG 4 cut(s) 28, 34, 40, 263
Fsp4HI GCNGC 9 cut(s) 193, 217, 238, 366, 369, 479, 523, 549, 724
FspBI CTAG 2 cut(s) 939, 972
GluI GCNGC 9 cut(s) 193, 217, 238, 366, 369, 479, 523, 549, 724
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 7 cut(s) 216, 308, 365, 485, 620, 809, 998
HapII CCGG 5 cut(s) 189, 228, 393, 409, 999
HgaI GACGC 1 cut(s) 551
Hin1II CATG 5 cut(s) 517, 640, 722, 964, 1054
HinfI GANTC 2 cut(s) 221, 326
HpaII CCGG 5 cut(s) 189, 228, 393, 409, 999
HphI GGTGA 2 cut(s) 139, 920
Hpy166II GTNNAC 2 cut(s) 958, 1117
Hpy188I TCNGA 6 cut(s) 277, 387, 470, 674, 1080, 1143
Hpy188III TCNNGA 3 cut(s) 228, 742, 756
Hpy8I GTNNAC 2 cut(s) 958, 1117
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 2 cut(s) 748, 877
HpyCH4III ACNGT 3 cut(s) 83, 130, 664
HpyCH4IV ACGT 1 cut(s) 1091
HpyCH4V TGCA 9 cut(s) 284, 454, 605, 629, 686, 695, 878, 947, 1061
HpyF10VI GCNNNNNNNGC 8 cut(s) 168, 213, 243, 345, 377, 626, 692, 884
HpyF3I CTNAG 6 cut(s) 330, 504, 540, 708, 980, 1055
HpySE526I ACGT 1 cut(s) 1091
Hsp92II CATG 5 cut(s) 517, 640, 722, 964, 1054
Kpn2I TCCGGA 1 cut(s) 227
KpnI GGTACC 1 cut(s) 988
Ksp22I TGATCA 1 cut(s) 870
Kzo9I GATC 6 cut(s) 6, 372, 387, 490, 744, 870
LmnI GCTCC 1 cut(s) 698
Lsp1109I GCAGC 4 cut(s) 204, 465, 535, 710
LweI GCATC 3 cut(s) 110, 216, 441
MaeI CTAG 2 cut(s) 939, 972
MaeII ACGT 1 cut(s) 1091
MaeIII GTNAC 3 cut(s) 130, 403, 856
MalI GATC 6 cut(s) 8, 374, 389, 492, 746, 872
MboI GATC 6 cut(s) 6, 372, 387, 490, 744, 870
MboII GAAGA 5 cut(s) 216, 304, 502, 526, 641
MflI RGATCY 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 4 cut(s) 455, 912, 1062, 1137
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 2 cut(s) 215, 335
MmeI TCCRAC 2 cut(s) 365, 697
Mox20I TGGCCA 1 cut(s) 620
MroI TCCGGA 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 578
MscI TGGCCA 1 cut(s) 620
MslI CAYNNNNRTG 1 cut(s) 1108
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 195, 854
MspI CCGG 5 cut(s) 189, 228, 393, 409, 999
MspR9I CCNGG 6 cut(s) 173, 362, 377, 393, 394, 409
Mva1269I GAATGC 1 cut(s) 524
MvaI CCWGG 3 cut(s) 173, 362, 377
MvnI CGCG 3 cut(s) 219, 371, 567
MwoI GCNNNNNNNGC 8 cut(s) 168, 213, 243, 345, 377, 626, 692, 884
NciI CCSGG 3 cut(s) 393, 394, 409
NcoI CCATGG 1 cut(s) 718
NdeI CATATG 1 cut(s) 949
NdeII GATC 6 cut(s) 6, 372, 387, 490, 744, 870
NlaIII CATG 5 cut(s) 517, 640, 722, 964, 1054
NlaIV GGNNCC 4 cut(s) 389, 808, 986, 1026
NmuCI GTSAC 2 cut(s) 403, 856
PaqCI CACCTGC 1 cut(s) 896
PceI AGGCCT 1 cut(s) 308
PctI GAATGC 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 578
PflMI CCANNNNNTGG 1 cut(s) 994
PkrI GCNGC 9 cut(s) 194, 218, 239, 367, 370, 480, 524, 550, 725
PleI GAGTC 2 cut(s) 215, 334
PpsI GAGTC 2 cut(s) 215, 334
PpuMI RGGWCCY 2 cut(s) 175, 358
Psp5II RGGWCCY 2 cut(s) 175, 358
Psp6I CCWGG 3 cut(s) 171, 360, 375
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 3 cut(s) 171, 360, 375
PspN4I GGNNCC 4 cut(s) 389, 808, 986, 1026
PspPI GGNCC 3 cut(s) 175, 358, 807
PspPPI RGGWCCY 2 cut(s) 175, 358
PsrI GAACNNNNNNTAC 2 cut(s) 1017, 1049
PsuI RGATCY 1 cut(s) 387
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 4 cut(s) 413, 557, 829, 986
RsaNI GTAC 4 cut(s) 412, 556, 828, 985
RseI CAYNNNNRTG 1 cut(s) 1108
SatI GCNGC 9 cut(s) 193, 217, 238, 366, 369, 479, 523, 549, 724
Sau3AI GATC 6 cut(s) 6, 372, 387, 490, 744, 870
Sau96I GGNCC 3 cut(s) 175, 358, 807
SchI GAGTC 2 cut(s) 215, 335
ScrFI CCNGG 6 cut(s) 173, 362, 377, 393, 394, 409
SfaNI GCATC 3 cut(s) 110, 216, 441
SfcI CTRYAG 2 cut(s) 776, 927
SinI GGWCC 2 cut(s) 175, 358
SmaI CCCGGG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 1108
Sse9I AATT 4 cut(s) 455, 912, 1062, 1137
SseBI AGGCCT 1 cut(s) 308
SspMI CTAG 2 cut(s) 939, 972
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 6 cut(s) 171, 360, 375, 391, 392, 407
StyI CCWWGG 2 cut(s) 354, 718
TaaI ACNGT 3 cut(s) 83, 130, 664
TaiI ACGT 1 cut(s) 1094
TaqI TCGA 1 cut(s) 417
TasI AATT 4 cut(s) 455, 912, 1062, 1137
TauI GCSGC 5 cut(s) 219, 240, 368, 371, 525
TscAI CASTG 2 cut(s) 133, 846
TseFI GTSAC 2 cut(s) 403, 856
TseI GCWGC 4 cut(s) 192, 478, 548, 723
Tsp45I GTSAC 2 cut(s) 403, 856
TspDTI ATGAA 3 cut(s) 502, 625, 1092
TspGWI ACGGA 1 cut(s) 216
TspMI CCCGGG 1 cut(s) 392
TspRI CASTG 2 cut(s) 133, 846
Van91I CCANNNNNTGG 1 cut(s) 994
VpaK11BI GGWCC 2 cut(s) 175, 358
XapI RAATTY 1 cut(s) 1137
XmaI CCCGGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 957
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 2 cut(s) 939, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.