Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010119.1

Orthogroup ID

OG0002218

Physical Location & Seq

Genomic Coordinates Reverse (-)

14840 .. 18154

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010119.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggcaatcgccttctgcttcactccctcctcctcctcctccgcctccaagttcaaccctcaccgtccgattccgtccctctccgcttctcccgtcgtgcacctccgcctcagcgtgtccccgccctctctggcgcaccgcggccgccagttcccgcgcgtgctgttcgccgccgggggcggagacgggggatttggcggcggaggacactccggaggcggtggcggcggggatcacggcggcgaggacaatgccggcgggaaaaacaagttggaggccctgatggtgttgaaggagtccgggcgggggttggagagcctgccgaaggacttggcggcggcgatcgaggacgggcggatccccggcgcggttgtggataagtattttgagctggagaagaacggctgcttttcgtggctgctgcagtttgctgggtttagggagcggttgttggctgatgatcttttcttgtttaaggtcttcatggagtgtggtgttggtcttttcaccaagactgctgcagagtaccagaaacgccaagaaaactttttcaatgagctcgaagttgtgtttgcagatgtggtaatggccataattgcagatttcatgcttgtatatcttcctgccccaactgtttctcttcgaccaccagttgcactcagcgcaggggcaatcaccaagtttttccatggttgccctgataatgcattccagattgctatctcaggaacatcatactccttatttcagaggattggtgcagtagtgagaaatgggagcaagctcttcgttgttggtactgcttcatcactggttggcacaagtgttacaaatgccttgatcaatgcaaagaaggctgttggtagctccgcagaggctgaagctgagcatgtacctatagtatccactagccttgcatacggtgtctatatggcagtttctagcaatctcaggtacttaaactttgatcagtgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

325

Amino Acids

34.31

Weight (kDa)

7.05

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12470
fragaria_vesca	FvH4_3g28550 FvH4_3g28550 FvH4_3g28550 FvH4_7g01660 FvH4_7g01660
malus_domestica	MD02G1301900.v1.1 MD03G1172700.v1.1 MD07G1022100.v1.1 MD07G1022200.v1.1 MD11G1190600.v1.1
prunus_persica	Prupe.2G022300_v2.0.a1 Prupe.4G253900_v2.0.a1
pyrus_communis	pycom02g25410 pycom03g12990 pycom07g01680 pycom11g16650
rosa_chinensis	RchiOBHm_Chr1g0317941 RchiOBHm_Chr5g0052771
rosa_laevigata	RLG00000030572 RLG00000034800
rosa_multiflora	Rmu_co8100628.1_g000001 Rmu_co8460597.1_g000001 Rmu_sc0010119.1_g000003 Rmu_sc0011424.1_g000037 Rmu_sc0014026.1_g000003 Rmu_ssc0000008.1_g000032
rosa_roxburghii	Rroxscaffold_1G00028580 Rroxscaffold_4G00330080
rosa_rugosa	Rorug01G0018600 Rorug01G0018700 Rorug05G0270000
rosa_samantha	Rh1AG030400 Rh1BG026800 Rh1CG029100 Rh1DG041100 Rh5AG342000 Rh5BG352600 Rh5CG379300 Rh5DG369000
rosa_wichuraiana	Rw0G017390 Rw1G002300 Rw5G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	445
AccII	CGCG	4 cut(s)	141, 157, 159, 368
AccIII	TCCGGA	1 cut(s)	212
AclWI	GGATC	3 cut(s)	240, 352, 365
AcoI	YGGCCR	2 cut(s)	142, 588
AcuI	CTGAAG	1 cut(s)	900
AfaI	GTAC	4 cut(s)	527, 799, 894, 956
AfiI	CCNNNNNNNGG	3 cut(s)	306, 325, 367
AgsI	TTSAA	3 cut(s)	55, 292, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	391, 559, 784, 867, 884
AluI	AGCT	5 cut(s)	391, 559, 784, 867, 884
Alw21I	GWGCWC	2 cut(s)	102, 561
Alw26I	GTCTC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	98
AlwI	GGATC	3 cut(s)	240, 352, 365
AlwNI	CAGNNNCTG	1 cut(s)	878
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	3 cut(s)	142, 276, 588
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	4 cut(s)	405, 418, 421, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspLEI	GCGC	4 cut(s)	136, 159, 368, 665
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	3 cut(s)	175, 301, 363
AsuHPI	GGTGA	3 cut(s)	53, 499, 667
BaeGI	GKGCMC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	590
BamHI	GGATCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	472
Bbv12I	GWGCWC	2 cut(s)	102, 561
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	4 cut(s)	392, 405, 408, 505
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	2 cut(s)	253, 418
BcgI	CGANNNNNNTGC	4 cut(s)	233, 267, 769, 803
BciVI	GTATCC	1 cut(s)	913
BclI	TGATCA	2 cut(s)	840, 967
BcnI	CCSGG	3 cut(s)	175, 301, 363
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	3 cut(s)	909, 942, 976
BfmI	CTRYAG	3 cut(s)	422, 519, 897
BfuI	GTATCC	1 cut(s)	913
BlpI	GCTNAGC	1 cut(s)	885
Bme1390I	CCNGG	3 cut(s)	175, 301, 363
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	175, 301, 363
BpiI	GAAGAC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	885
BpuMI	CCSGG	3 cut(s)	175, 301, 363
BsaBI	GATNNNNATC	1 cut(s)	719
BsaJI	CCNNGG	4 cut(s)	139, 174, 361, 688
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 325, 367
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	3 cut(s)	148, 650, 816
Bse8I	GATNNNNATC	1 cut(s)	719
BseAI	TCCGGA	1 cut(s)	212
BseDI	CCNNGG	4 cut(s)	139, 174, 361, 688
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	3 cut(s)	306, 325, 367
BseMII	CTCAG	5 cut(s)	124, 673, 738, 876, 964
BseNI	ACTGG	3 cut(s)	148, 650, 816
BseRI	GAGGAG	4 cut(s)	19, 22, 25, 28
BseSI	GKGCMC	1 cut(s)	102
BseX3I	CGGCCG	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	392, 405, 408, 505
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	4 cut(s)	141, 157, 159, 368
Bsh1285I	CGRYCG	2 cut(s)	145, 345
BshFI	GGCC	3 cut(s)	144, 278, 590
BsiEI	CGRYCG	2 cut(s)	145, 345
BsiHKAI	GWGCWC	2 cut(s)	102, 561
BsiSI	CCGG	5 cut(s)	174, 213, 255, 300, 363
BslFI	GGGAC	2 cut(s)	61, 103
BslI	CCNNNNNNNGG	3 cut(s)	306, 325, 367
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	61, 103
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	3 cut(s)	144, 278, 590
Bsp1286I	GDGCHC	2 cut(s)	102, 561
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	6 cut(s)	232, 342, 357, 460, 840, 967
Bsp1720I	GCTNAGC	1 cut(s)	885
Bsp19I	CCATGG	1 cut(s)	688
BspANI	GGCC	3 cut(s)	144, 278, 590
BspCNI	CTCAG	5 cut(s)	123, 672, 737, 877, 963
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	4 cut(s)	141, 157, 159, 368
BspLI	GGNNCC	1 cut(s)	359
BspMAI	CTGCAG	2 cut(s)	426, 523
BspPI	GGATC	3 cut(s)	240, 352, 365
BspQI	GCTCTTC	1 cut(s)	791
BsrBI	CCGCTC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	148, 650, 816
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	4 cut(s)	139, 174, 361, 688
BssMI	GATC	6 cut(s)	232, 342, 357, 460, 840, 967
BssT1I	CCWWGG	1 cut(s)	688
Bst4CI	ACNGT	3 cut(s)	65, 634, 923
Bst6I	CTCTTC	2 cut(s)	645, 791
BstC8I	GCNNGC	4 cut(s)	161, 256, 320, 782
BstDEI	CTNAG	5 cut(s)	110, 659, 724, 885, 950
BstDSI	CCRYGG	2 cut(s)	139, 688
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstFNI	CGCG	4 cut(s)	141, 157, 159, 368
BstHHI	GCGC	4 cut(s)	136, 159, 368, 665
BstKTI	GATC	6 cut(s)	235, 345, 360, 463, 843, 970
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	6 cut(s)	232, 342, 357, 460, 840, 967
BstMCI	CGRYCG	2 cut(s)	145, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 596, 662, 854
BstNSI	RCATGY	1 cut(s)	893
BstSCI	CCNGG	3 cut(s)	173, 299, 361
BstSFI	CTRYAG	3 cut(s)	422, 519, 897
BstSLI	GKGCMC	1 cut(s)	102
BstUI	CGCG	4 cut(s)	141, 157, 159, 368
BstV1I	GCAGC	4 cut(s)	392, 405, 408, 505
BstV2I	GAAGAC	1 cut(s)	472
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BstZI	CGGCCG	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	913
BsuRI	GGCC	3 cut(s)	144, 278, 590
BtgI	CCRYGG	2 cut(s)	139, 688
BtsIMutI	CAGTG	2 cut(s)	809, 977
Cac8I	GCNNGC	4 cut(s)	161, 256, 320, 782
CaiI	CAGNNNCTG	1 cut(s)	878
CciNI	GCGGCCGC	1 cut(s)	142
CfoI	GCGC	4 cut(s)	136, 159, 368, 665
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	142
Csp6I	GTAC	4 cut(s)	526, 798, 893, 955
CspCI	CAANNNNNGTGG	2 cut(s)	895, 930
CviAII	CATG	4 cut(s)	484, 607, 689, 890
CviQI	GTAC	4 cut(s)	526, 798, 893, 955
DdeI	CTNAG	5 cut(s)	110, 659, 724, 885, 950
DpnI	GATC	6 cut(s)	234, 344, 359, 462, 842, 969
DpnII	GATC	6 cut(s)	232, 342, 357, 460, 840, 967
EaeI	YGGCCR	2 cut(s)	142, 588
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	645, 791
EarI	CTCTTC	2 cut(s)	645, 791
EciI	GGCGGA	5 cut(s)	31, 95, 195, 216, 370
Ecl136II	GAGCTC	1 cut(s)	559
EclXI	CGGCCG	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	688
Eco24I	GRGCYC	1 cut(s)	561
Eco52I	CGGCCG	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	900
EcoICRI	GAGCTC	1 cut(s)	559
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	688
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	4 cut(s)	487, 610, 692, 893
FaqI	GGGAC	2 cut(s)	61, 103
FatI	CATG	4 cut(s)	483, 606, 688, 889
FauI	CCCGC	5 cut(s)	129, 162, 221, 251, 297
FbaI	TGATCA	2 cut(s)	840, 967
FriOI	GRGCYC	1 cut(s)	561
FspBI	CTAG	3 cut(s)	909, 942, 976
GlaI	GCGC	4 cut(s)	135, 158, 367, 664
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	3 cut(s)	144, 278, 590
HapII	CCGG	5 cut(s)	174, 213, 255, 300, 363
HhaI	GCGC	4 cut(s)	136, 159, 368, 665
Hin1II	CATG	4 cut(s)	487, 610, 692, 893
Hin6I	GCGC	4 cut(s)	134, 157, 366, 663
HinP1I	GCGC	4 cut(s)	134, 157, 366, 663
HinfI	GANTC	2 cut(s)	70, 296
HpaII	CCGG	5 cut(s)	174, 213, 255, 300, 363
HphI	GGTGA	3 cut(s)	53, 499, 667
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	69, 750
Hpy188III	TCNNGA	3 cut(s)	213, 712, 726
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	4 cut(s)	22, 286, 319, 847
HpyCH4III	ACNGT	3 cut(s)	65, 634, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 596, 662, 854
HpyF3I	CTNAG	5 cut(s)	110, 659, 724, 885, 950
Hsp92II	CATG	4 cut(s)	487, 610, 692, 893
HspAI	GCGC	4 cut(s)	134, 157, 366, 663
Kpn2I	TCCGGA	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Ksp22I	TGATCA	2 cut(s)	840, 967
KspI	CCGCGG	1 cut(s)	142
Kzo9I	GATC	6 cut(s)	232, 342, 357, 460, 840, 967
LguI	GCTCTTC	1 cut(s)	791
LmnI	GCTCC	3 cut(s)	442, 777, 872
Lsp1109I	GCAGC	4 cut(s)	392, 405, 408, 505
MaeI	CTAG	3 cut(s)	909, 942, 976
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	6 cut(s)	234, 344, 359, 462, 842, 969
MbiI	CCGCTC	1 cut(s)	445
MboI	GATC	6 cut(s)	232, 342, 357, 460, 840, 967
MboII	GAAGA	5 cut(s)	409, 472, 611, 632, 778
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	102, 561
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	1 cut(s)	594
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	252, 291
Mox20I	TGGCCA	1 cut(s)	590
Mph1103I	ATGCAT	1 cut(s)	709
MroI	TCCGGA	1 cut(s)	212
MroNI	GCCGGC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	2 cut(s)	474, 959
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	5 cut(s)	174, 213, 255, 300, 363
MspR9I	CCNGG	3 cut(s)	175, 301, 363
Mva1269I	GAATGC	1 cut(s)	707
MvnI	CGCG	4 cut(s)	141, 157, 159, 368
MwoI	GCNNNNNNNGC	4 cut(s)	225, 596, 662, 854
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	3 cut(s)	175, 301, 363
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	6 cut(s)	232, 342, 357, 460, 840, 967
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	4 cut(s)	487, 610, 692, 893
NlaIV	GGNNCC	1 cut(s)	359
NotI	GCGGCCGC	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	893
PciSI	GCTCTTC	1 cut(s)	791
PctI	GAATGC	1 cut(s)	707
PdiI	GCCGGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	70
Ple19I	CGATCG	1 cut(s)	345
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	2 cut(s)	426, 523
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	1 cut(s)	357
PvuI	CGATCG	1 cut(s)	345
RsaI	GTAC	4 cut(s)	527, 799, 894, 956
RsaNI	GTAC	4 cut(s)	526, 798, 893, 955
SacI	GAGCTC	1 cut(s)	561
SacII	CCGCGG	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	791
SaqAI	TTAA	2 cut(s)	474, 959
Sau3AI	GATC	6 cut(s)	232, 342, 357, 460, 840, 967
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	175, 301, 363
SduI	GDGCHC	2 cut(s)	102, 561
SetI	ASST	9 cut(s)	105, 393, 480, 561, 786, 869, 886, 898, 956
SfcI	CTRYAG	3 cut(s)	422, 519, 897
Sfr303I	CCGCGG	1 cut(s)	142
SgrBI	CCGCGG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	594
SspMI	CTAG	3 cut(s)	909, 942, 976
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	173, 299, 361
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	3 cut(s)	65, 634, 923
TaqI	TCGA	3 cut(s)	345, 561, 643
TasI	AATT	1 cut(s)	594
TauI	GCSGC	8 cut(s)	144, 147, 173, 201, 228, 243, 338, 341
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	474, 959
Tru9I	TTAA	2 cut(s)	474, 959
TscAI	CASTG	2 cut(s)	816, 977
TseI	GCWGC	4 cut(s)	405, 418, 421, 518
TspDTI	ATGAA	3 cut(s)	472, 595, 795
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	816, 977
VneI	GTGCAC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	323
XceI	RCATGY	1 cut(s)	893
XspI	CTAG	3 cut(s)	909, 942, 976
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.