Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000008.1

Orthogroup ID

OG0002218

Physical Location & Seq

Genomic Coordinates Reverse (-)

105711 .. 108196

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000008.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atggcggtcgctaccttttccaatttctccactttcaccactcgcaacccctctctctcttcttcttcaccaaatcaccactctttcccgcgcaccacaaacttcactttcactactaccctcaccaaacctcccacctccctctctctcgccacgtcaccgcgcctcccccgctcctctttcgccacgtgtttctcctccggcggcccaccttcctccggcggaggcggcgggggaggagatcacggaaatggaggcggtgacggagagggaggggaggacagagagaggaacaaaaaggaggcggcgatggcgattgcggaggcgggaaggacggcggagagtctgccgaaggacttggcggcggcggtggaggcgggtcgggtccccgggttgattatgaagaggttctttgagctggagaagtcggtgatcttcaggtggctgcttcagtttgatggattcaaggagcggttgctggccgacgacttgttcttgaccaaagttggcatcgagtgcggtgttggaattttcaccaagactgctgcagagttggagcggcgcagagaaaaatttaccaaggagctggattttgtgtttgcggatgtggtgatggccattatagctgattttatgcttgtctggcttcctgctcctactgtttcacttcgaaaacctcttgttgtcagtgctgggcgtgttgctaagttcttctatggctgtcctgacaatgcatttcaggtagctttgtctggaacatcttactcagtcttacagagaataggcgcaatcttgagaaatggagcaaaactattcgtggttgggactggtgcatctctgattggtactggtgtaacaaatgcattgattgctgcaagaaaagctttggacaaatcctttcttggtgaagcagaagatgttcccatattatcaactagtgcagcctatggggtctatatggcagtttctagcaatctaaggtaccaagttctcgctggaataatcgaacaacgtattctagaacccttgctacaccaacacaagcttgcactgagtgcaatttgctttgctgttcgaactggaaacacatttttggggtccttgatgtgggttgattatgcacgctggattggaattcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

380

Amino Acids

40.75

Weight (kDa)

9.24

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12470
fragaria_vesca	FvH4_3g28550 FvH4_3g28550 FvH4_3g28550 FvH4_7g01660 FvH4_7g01660
malus_domestica	MD02G1301900.v1.1 MD03G1172700.v1.1 MD07G1022100.v1.1 MD07G1022200.v1.1 MD11G1190600.v1.1
prunus_persica	Prupe.2G022300_v2.0.a1 Prupe.4G253900_v2.0.a1
pyrus_communis	pycom02g25410 pycom03g12990 pycom07g01680 pycom11g16650
rosa_chinensis	RchiOBHm_Chr1g0317941 RchiOBHm_Chr5g0052771
rosa_laevigata	RLG00000030572 RLG00000034800
rosa_multiflora	Rmu_co8100628.1_g000001 Rmu_co8460597.1_g000001 Rmu_sc0010119.1_g000003 Rmu_sc0011424.1_g000037 Rmu_sc0014026.1_g000003 Rmu_ssc0000008.1_g000032
rosa_roxburghii	Rroxscaffold_1G00028580 Rroxscaffold_4G00330080
rosa_rugosa	Rorug01G0018600 Rorug01G0018700 Rorug05G0270000
rosa_samantha	Rh1AG030400 Rh1BG026800 Rh1CG029100 Rh1DG041100 Rh5AG342000 Rh5BG352600 Rh5CG379300 Rh5DG369000
rosa_wichuraiana	Rw0G017390 Rw1G002300 Rw5G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	981
AccB1I	GGYRCC	1 cut(s)	981
AccBSI	CCGCTC	3 cut(s)	174, 472, 559
AccII	CGCG	2 cut(s)	91, 163
AcoI	YGGCCR	2 cut(s)	480, 615
AcsI	RAATTY	3 cut(s)	528, 572, 1134
AcuI	CTGAAG	2 cut(s)	421, 434
AcvI	CACGTG	1 cut(s)	189
AdeI	CACNNNGTG	1 cut(s)	1055
AfaI	GTAC	2 cut(s)	847, 983
AfiI	CCNNNNNNNGG	2 cut(s)	218, 1107
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	466, 1139
AhlI	ACTAGT	1 cut(s)	935
AjiI	CACGTC	1 cut(s)	156
AluBI	AGCT	6 cut(s)	418, 586, 626, 746, 884, 1045
AluI	AGCT	6 cut(s)	418, 586, 626, 746, 884, 1045
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	3 cut(s)	205, 480, 615
ApeKI	GCWGC	4 cut(s)	445, 545, 872, 941
ApoI	RAATTY	3 cut(s)	528, 572, 1134
Asp700I	GAANNNNTTC	2 cut(s)	407, 918
Asp718I	GGTACC	1 cut(s)	981
AspLEI	GCGC	4 cut(s)	93, 165, 564, 788
AspS9I	GGNCC	3 cut(s)	206, 385, 1098
AsuC2I	CCSGG	2 cut(s)	390, 391
AsuII	TTCGAA	2 cut(s)	670, 1075
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	385, 1098
BaeI	ACNNNNGTAYC	2 cut(s)	837, 870
BalI	TGGCCA	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	981
BbrPI	CACGTG	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	432, 532, 859, 953
BccI	CCATC	3 cut(s)	304, 452, 607
BceAI	ACGGC	1 cut(s)	351
BcnI	CCSGG	2 cut(s)	390, 391
BcuI	ACTAGT	1 cut(s)	935
BfaI	CTAG	3 cut(s)	936, 969, 1019
BfmI	CTRYAG	1 cut(s)	546
Bme1390I	CCNGG	2 cut(s)	390, 391
Bme18I	GGWCC	2 cut(s)	385, 1098
BmeT110I	CYCGRG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	3 cut(s)	206, 385, 1098
BmiI	GGNNCC	4 cut(s)	386, 387, 983, 1099
BmrFI	CCNGG	2 cut(s)	390, 391
BmsI	GCATC	2 cut(s)	519, 842
BpmI	CTGGAG	1 cut(s)	440
Bpu14I	TTCGAA	2 cut(s)	670, 1075
BpuEI	CTTGAG	1 cut(s)	814
BpuMI	CCSGG	2 cut(s)	390, 391
BsaAI	YACGTR	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	388, 389, 579
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 150, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 1107
Bse1I	ACTGG	3 cut(s)	832, 853, 1084
BseDI	CCNNGG	3 cut(s)	388, 389, 579
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	2 cut(s)	218, 1107
BseMII	CTCAG	2 cut(s)	780, 1043
BseNI	ACTGG	3 cut(s)	832, 853, 1084
BseRI	GAGGAG	3 cut(s)	166, 187, 252
BseXI	GCAGC	4 cut(s)	432, 532, 859, 953
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	960
Bsh1236I	CGCG	2 cut(s)	91, 163
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	207, 482, 617
BshNI	GGYRCC	1 cut(s)	981
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	3 cut(s)	201, 219, 390
BslFI	GGGAC	2 cut(s)	371, 838
BslI	CCNNNNNNNGG	2 cut(s)	218, 1107
BsmFI	GGGAC	2 cut(s)	371, 838
BsnI	GGCC	3 cut(s)	207, 482, 617
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	2 cut(s)	670, 1075
Bsp143I	GATC	2 cut(s)	241, 432
BspANI	GGCC	3 cut(s)	207, 482, 617
BspCNI	CTCAG	2 cut(s)	779, 1044
BspFNI	CGCG	2 cut(s)	91, 163
BspLI	GGNNCC	4 cut(s)	386, 387, 983, 1099
BspMAI	CTGCAG	1 cut(s)	550
BspT104I	TTCGAA	2 cut(s)	670, 1075
BspT107I	GGYRCC	1 cut(s)	981
BsrBI	CCGCTC	3 cut(s)	174, 472, 559
BsrI	ACTGG	3 cut(s)	832, 853, 1084
BssECI	CCNNGG	3 cut(s)	388, 389, 579
BssMI	GATC	2 cut(s)	241, 432
BssT1I	CCWWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	661
Bst6I	CTCTTC	2 cut(s)	64, 398
BstAPI	GCANNNNNTGC	3 cut(s)	516, 869, 1055
BstBAI	YACGTR	1 cut(s)	189
BstBI	TTCGAA	2 cut(s)	670, 1075
BstC8I	GCNNGC	3 cut(s)	480, 1047, 1123
BstDEI	CTNAG	4 cut(s)	705, 766, 977, 1052
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	2 cut(s)	91, 163
BstHHI	GCGC	4 cut(s)	93, 165, 564, 788
BstKTI	GATC	2 cut(s)	244, 435
BstMBI	GATC	2 cut(s)	241, 432
BstMCI	CGRYCG	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	388, 389
BstSFI	CTRYAG	1 cut(s)	546
BstUI	CGCG	2 cut(s)	91, 163
BstV1I	GCAGC	4 cut(s)	432, 532, 859, 953
BstXI	CCANNNNNNTGG	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	207, 482, 617
BtgZI	GCGATG	1 cut(s)	323
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	694, 1049
Cac8I	GCNNGC	3 cut(s)	480, 1047, 1123
CfoI	GCGC	4 cut(s)	93, 165, 564, 788
Cfr13I	GGNCC	3 cut(s)	206, 385, 1098
Cfr9I	CCCGGG	1 cut(s)	389
Csp6I	GTAC	2 cut(s)	846, 982
CviQI	GTAC	2 cut(s)	846, 982
DdeI	CTNAG	4 cut(s)	705, 766, 977, 1052
DpnI	GATC	2 cut(s)	243, 434
DpnII	GATC	2 cut(s)	241, 432
DraIII	CACNNNGTG	1 cut(s)	1055
EaeI	YGGCCR	2 cut(s)	480, 615
Eam1104I	CTCTTC	2 cut(s)	64, 398
EarI	CTCTTC	2 cut(s)	64, 398
EciI	GGCGGA	2 cut(s)	237, 353
Eco130I	CCWWGG	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	385, 1098
Eco57I	CTGAAG	2 cut(s)	421, 434
Eco72I	CACGTG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	389
EcoO109I	RGGNCCY	2 cut(s)	385, 1098
EcoRI	GAATTC	1 cut(s)	1134
EcoT14I	CCWWGG	1 cut(s)	579
EcoT22I	ATGCAT	2 cut(s)	736, 865
ErhI	CCWWGG	1 cut(s)	579
FaiI	YATR	9 cut(s)	401, 623, 635, 717, 926, 948, 957, 959, 1119
FalI	AAGNNNNNCTT	4 cut(s)	395, 427, 868, 900
FaqI	GGGAC	2 cut(s)	371, 838
FauI	CCCGC	5 cut(s)	96, 179, 224, 319, 370
FokI	GGATG	1 cut(s)	617
FspBI	CTAG	3 cut(s)	936, 969, 1019
GlaI	GCGC	4 cut(s)	92, 164, 563, 787
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	207, 482, 617
HapII	CCGG	3 cut(s)	201, 219, 390
HhaI	GCGC	4 cut(s)	93, 165, 564, 788
Hin6I	GCGC	4 cut(s)	91, 163, 562, 786
HinP1I	GCGC	4 cut(s)	91, 163, 562, 786
HindIII	AAGCTT	2 cut(s)	882, 1043
HinfI	GANTC	2 cut(s)	343, 462
HpaII	CCGG	3 cut(s)	201, 219, 390
Hpy188I	TCNGA	1 cut(s)	840
Hpy188III	TCNNGA	5 cut(s)	496, 725, 753, 793, 1019
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	3 cut(s)	222, 324, 346
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4IV	ACGT	3 cut(s)	155, 188, 1012
HpyCH4V	TGCA	9 cut(s)	548, 734, 833, 863, 875, 941, 1049, 1058, 1121
HpyF3I	CTNAG	4 cut(s)	705, 766, 977, 1052
HpySE526I	ACGT	3 cut(s)	155, 188, 1012
HspAI	GCGC	4 cut(s)	91, 163, 562, 786
KflI	GGGWCCC	1 cut(s)	385
KpnI	GGTACC	1 cut(s)	985
Kzo9I	GATC	2 cut(s)	241, 432
LmnI	GCTCC	6 cut(s)	179, 469, 556, 583, 658, 803
Lsp1109I	GCAGC	4 cut(s)	432, 532, 859, 953
LweI	GCATC	2 cut(s)	519, 842
MaeI	CTAG	3 cut(s)	936, 969, 1019
MaeII	ACGT	3 cut(s)	155, 188, 1012
MaeIII	GTNAC	3 cut(s)	156, 260, 853
MalI	GATC	2 cut(s)	243, 434
MbiI	CCGCTC	3 cut(s)	174, 472, 559
MboI	GATC	2 cut(s)	241, 432
MboII	GAAGA	7 cut(s)	51, 54, 57, 415, 427, 703, 926
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	5 cut(s)	22, 528, 572, 1059, 1134
MluNI	TGGCCA	1 cut(s)	617
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	2 cut(s)	505, 534
Mox20I	TGGCCA	1 cut(s)	617
Mph1103I	ATGCAT	2 cut(s)	736, 865
MroXI	GAANNNNTTC	2 cut(s)	407, 918
MscI	TGGCCA	1 cut(s)	617
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	617
MspI	CCGG	3 cut(s)	201, 219, 390
MspR9I	CCNGG	2 cut(s)	390, 391
MvnI	CGCG	2 cut(s)	91, 163
NciI	CCSGG	2 cut(s)	390, 391
NdeII	GATC	2 cut(s)	241, 432
NlaIV	GGNNCC	4 cut(s)	386, 387, 983, 1099
NmuCI	GTSAC	2 cut(s)	156, 260
NsiI	ATGCAT	2 cut(s)	736, 865
NspV	TTCGAA	2 cut(s)	670, 1075
PdmI	GAANNNNTTC	2 cut(s)	407, 918
PfeI	GAWTC	1 cut(s)	462
PleI	GAGTC	1 cut(s)	351
PmaCI	CACGTG	1 cut(s)	189
PmlI	CACGTG	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	351
Ppu21I	YACGTR	1 cut(s)	189
PpuMI	RGGWCCY	2 cut(s)	385, 1098
Psp5II	RGGWCCY	2 cut(s)	385, 1098
PspCI	CACGTG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	692
PspN4I	GGNNCC	4 cut(s)	386, 387, 983, 1099
PspPI	GGNCC	3 cut(s)	206, 385, 1098
PspPPI	RGGWCCY	2 cut(s)	385, 1098
PsrI	GAACNNNNNNTAC	2 cut(s)	1014, 1046
PstI	CTGCAG	1 cut(s)	550
RsaI	GTAC	2 cut(s)	847, 983
RsaNI	GTAC	2 cut(s)	846, 982
RseI	CAYNNNNRTG	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	241, 432
Sau96I	GGNCC	3 cut(s)	206, 385, 1098
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	390, 391
SfaNI	GCATC	2 cut(s)	519, 842
SfcI	CTRYAG	1 cut(s)	546
SfuI	TTCGAA	2 cut(s)	670, 1075
SinI	GGWCC	2 cut(s)	385, 1098
SmaI	CCCGGG	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
SpeI	ACTAGT	1 cut(s)	935
Sse9I	AATT	5 cut(s)	22, 528, 572, 1059, 1134
SspMI	CTAG	3 cut(s)	936, 969, 1019
StyD4I	CCNGG	2 cut(s)	388, 389
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	661
TaiI	ACGT	3 cut(s)	158, 191, 1015
TaqI	TCGA	4 cut(s)	513, 670, 1005, 1075
TasI	AATT	5 cut(s)	22, 528, 572, 1059, 1134
TauI	GCSGC	6 cut(s)	207, 231, 308, 365, 368, 562
TfiI	GAWTC	1 cut(s)	462
TscAI	CASTG	2 cut(s)	694, 1056
TseFI	GTSAC	2 cut(s)	156, 260
TseI	GCWGC	4 cut(s)	445, 545, 872, 941
Tsp45I	GTSAC	2 cut(s)	156, 260
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	2 cut(s)	261, 279
TspMI	CCCGGG	1 cut(s)	389
TspRI	CASTG	2 cut(s)	694, 1056
VpaK11BI	GGWCC	2 cut(s)	385, 1098
XapI	RAATTY	3 cut(s)	528, 572, 1134
XbaI	TCTAGA	1 cut(s)	1018
XcmI	CCANNNNNNNNNTGG	1 cut(s)	992
XmaI	CCCGGG	1 cut(s)	389
XmnI	GAANNNNTTC	2 cut(s)	407, 918
XspI	CTAG	3 cut(s)	936, 969, 1019
Zsp2I	ATGCAT	2 cut(s)	736, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.