FvH4_3g28550

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002218
Physical Location & Seq
Reverse (-)
21546531 .. 21551024
4494 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28550.t3

Sequence Viewer

Length: 1137 bp
ATGGCAATCTCTCTCTGCTTCATTTCCTCCTCCTCCTCCTCCTCCGCCACCGCCGCCGCTTCTTTCAATCCCCACCGTTTACTTCCCTCGCTCTCCGCCTCTCCCGTCGTCCACCTCCGCCTCGGCGTCTCCGCCCCCTCCCTCTCCCACCGCTGCCGCCAATTCCGCCGCGTGCTGTTCTCAGCCGGCGGCGGGGACGGCGGATTCAGCGGCGGAGGCTCCCACGGAGGCGGAGGCGGCGGGGACAGCGGAGGCGAGGACAATGCAGGCGGGAAAAACAGGGTGGAGGCGCTTATGGTGTTGAAGAAGTCCGGCCGGGGACTGGAGAGCTTGCCGCAGGACTTGGCGGCGGCGATCGAGGACGGCCGGATCCCCGGCGCCGTTGTGGACAAGTATTTTGAGCTCGAGAAGAGCGGCTTCTTTTCGTGGCTGCTGCAGTTCGCTGGGTTTAGGGAGCGATTGCTGGCTGATGATCTCTTCTTGTTTAAGGTCTTCATGGAGTGTGGCGTTGGTCTTTTCACCAAGACTGCTGCAGAGTACCAGAAGCGCAAGGAGAACTTTTTCAATGAGCTCGAAGTTGTATTTGCAGATGTGGTAATGGCCATAATTGCAGATTTCATGCTTGTATATCTCCCTGCCCCAACTGTTTCTCTTCGCCCACCACTTGGACTAAGTGCAGGGGCAATCACCAAGTTTTTCCATGGTTGCCCTGATAATGCATTCCAGATCGCTCTCTCTGGAATATCATACTCCTTATTACAGAGGATTGGTGCAGTAGTGAGAAATGGGAGCAAGCTCTTTGTCGTCGGTACTGCTTCATCACTGGTTGGCACATCTGTTACAAATGCCTTGGTCAATGCAAAGAAGGCTGTTGGTAGCTCTTCAGAGGGTGAAGCTGAGAATGTTCCTATAGTATCCACTAGCCTTGCATATGGTGTCTATATGGCAGTTTCTAGCAATCTCAGGTATCAAGTGTTGGCTGGTGTTATTGAACAAAGGATGTTGGAGCCACTACTACATCAACACAAGCTAATGCTAAGTGCAATATGCTTTGCCGTTCGAACGGGCAACACATTCTTGGGTTCATTATTGTGGGTGGATTATGCTCGTTTAATTGGGATTCAGAAGGCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

379

Amino Acids

40.08

Weight (kDa)

8.92

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 152 - 277 1.4e-41 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccB7I CCANNNNNTGG 1 cut(s) 665
AccBSI CCGCTC 1 cut(s) 414
AccII CGCG 1 cut(s) 171
AclWI GGATC 2 cut(s) 364, 377
AcoI YGGCCR 3 cut(s) 313, 364, 600
AcuI CTGAAG 1 cut(s) 867
AcyI GRCGYC 2 cut(s) 126, 378
AfaI GTAC 2 cut(s) 539, 811
AfiI CCNNNNNNNGG 3 cut(s) 192, 322, 665
AgsI TTSAA 4 cut(s) 67, 304, 565, 992
AluBI AGCT 7 cut(s) 330, 403, 571, 796, 879, 896, 1030
AluI AGCT 7 cut(s) 330, 403, 571, 796, 879, 896, 1030
Alw21I GWGCWC 2 cut(s) 405, 573
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 2 cut(s) 364, 377
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 4 cut(s) 313, 364, 600, 1128
ApeKI GCWGC 4 cut(s) 153, 430, 433, 530
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 1 cut(s) 560
AspLEI GCGC 3 cut(s) 292, 380, 549
AspS9I GGNCC 1 cut(s) 1129
AsuC2I CCSGG 2 cut(s) 317, 375
AsuHPI GGTGA 3 cut(s) 511, 679, 902
AsuII TTCGAA 1 cut(s) 1060
AvaI CYCGRG 1 cut(s) 404
BalI TGGCCA 1 cut(s) 602
BamHI GGATCC 1 cut(s) 369
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 2 cut(s) 405, 573
BbsI GAAGAC 1 cut(s) 484
Bbv12I GWGCWC 2 cut(s) 405, 573
BbvI GCAGC 4 cut(s) 140, 417, 420, 517
BceAI ACGGC 4 cut(s) 214, 365, 379, 1040
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciVI GTATCC 1 cut(s) 925
BcnI CCSGG 2 cut(s) 317, 375
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 2 cut(s) 921, 954
BfmI CTRYAG 3 cut(s) 434, 531, 909
BfoI RGCGCY 2 cut(s) 293, 381
BfuI GTATCC 1 cut(s) 925
Bme1390I CCNGG 2 cut(s) 317, 375
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 1129
BmiI GGNNCC 4 cut(s) 220, 371, 379, 1008
BmrFI CCNGG 2 cut(s) 317, 375
BpiI GAAGAC 1 cut(s) 484
BpmI CTGGAG 1 cut(s) 344
Bpu14I TTCGAA 1 cut(s) 1060
BpuMI CCSGG 2 cut(s) 317, 375
BsaHI GRCGYC 2 cut(s) 126, 378
BsaJI CCNNGG 6 cut(s) 121, 223, 316, 373, 700, 849
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 322, 665
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 327, 828
BseDI CCNNGG 6 cut(s) 121, 223, 316, 373, 700, 849
BseGI GGATG 1 cut(s) 1005
BseLI CCNNNNNNNGG 3 cut(s) 192, 322, 665
BseMII CTCAG 3 cut(s) 195, 888, 976
BseNI ACTGG 2 cut(s) 327, 828
BseRI GAGGAG 5 cut(s) 19, 22, 25, 28, 31
BseX3I CGGCCG 2 cut(s) 313, 364
BseXI GCAGC 4 cut(s) 140, 417, 420, 517
BseYI CCCAGC 1 cut(s) 443
BsgI GTGCAG 2 cut(s) 696, 792
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 3 cut(s) 316, 357, 367
BshFI GGCC 4 cut(s) 315, 366, 602, 1130
BshNI GGYRCC 1 cut(s) 377
BsiEI CGRYCG 3 cut(s) 316, 357, 367
BsiHKAI GWGCWC 2 cut(s) 405, 573
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 5 cut(s) 186, 312, 316, 367, 375
BslFI GGGAC 3 cut(s) 209, 257, 333
BslI CCNNNNNNNGG 3 cut(s) 192, 322, 665
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 3 cut(s) 209, 257, 333
BsmI GAATGC 1 cut(s) 719
BsnI GGCC 4 cut(s) 315, 366, 602, 1130
BsoBI CYCGRG 1 cut(s) 404
Bsp119I TTCGAA 1 cut(s) 1060
Bsp1286I GDGCHC 2 cut(s) 405, 573
Bsp143I GATC 4 cut(s) 354, 369, 472, 726
Bsp19I CCATGG 1 cut(s) 700
BspANI GGCC 4 cut(s) 315, 366, 602, 1130
BspCNI CTCAG 3 cut(s) 194, 889, 975
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 4 cut(s) 220, 371, 379, 1008
BspMAI CTGCAG 2 cut(s) 438, 535
BspPI GGATC 2 cut(s) 364, 377
BspQI GCTCTTC 2 cut(s) 404, 886
BspT104I TTCGAA 1 cut(s) 1060
BspT107I GGYRCC 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 2 cut(s) 327, 828
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 6 cut(s) 121, 223, 316, 373, 700, 849
BssMI GATC 4 cut(s) 354, 369, 472, 726
BssNI GRCGYC 2 cut(s) 126, 378
BssT1I CCWWGG 2 cut(s) 700, 849
Bst4CI ACNGT 2 cut(s) 77, 646
Bst6I CTCTTC 4 cut(s) 404, 482, 657, 886
BstACI GRCGYC 2 cut(s) 126, 378
BstBI TTCGAA 1 cut(s) 1060
BstC8I GCNNGC 6 cut(s) 173, 187, 268, 332, 465, 794
BstDEI CTNAG 5 cut(s) 181, 671, 897, 962, 1037
BstDSI CCRYGG 2 cut(s) 223, 700
BstF5I GGATG 1 cut(s) 1005
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 2 cut(s) 293, 381
BstHHI GCGC 3 cut(s) 292, 380, 549
BstKTI GATC 4 cut(s) 357, 372, 475, 729
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 4 cut(s) 354, 369, 472, 726
BstMCI CGRYCG 3 cut(s) 316, 357, 367
BstMWI GCNNNNNNNGC 9 cut(s) 53, 165, 198, 207, 216, 237, 246, 608, 866
BstSCI CCNGG 2 cut(s) 315, 373
BstSFI CTRYAG 3 cut(s) 434, 531, 909
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 4 cut(s) 140, 417, 420, 517
BstV2I GAAGAC 1 cut(s) 484
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BstZI CGGCCG 2 cut(s) 313, 364
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 4 cut(s) 315, 366, 602, 1130
BtgI CCRYGG 2 cut(s) 223, 700
BtsCI GGATG 1 cut(s) 1005
BtsIMutI CAGTG 1 cut(s) 821
Cac8I GCNNGC 6 cut(s) 173, 187, 268, 332, 465, 794
CfoI GCGC 3 cut(s) 292, 380, 549
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 1129
CseI GACGC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 538, 810
CspCI CAANNNNNGTGG 2 cut(s) 907, 942
CviAII CATG 3 cut(s) 496, 619, 701
CviQI GTAC 2 cut(s) 538, 810
DdeI CTNAG 5 cut(s) 181, 671, 897, 962, 1037
DinI GGCGCC 1 cut(s) 379
DpnI GATC 4 cut(s) 356, 371, 474, 728
DpnII GATC 4 cut(s) 354, 369, 472, 726
EaeI YGGCCR 3 cut(s) 313, 364, 600
EagI CGGCCG 2 cut(s) 313, 364
Eam1104I CTCTTC 4 cut(s) 404, 482, 657, 886
EarI CTCTTC 4 cut(s) 404, 482, 657, 886
EciI GGCGGA 8 cut(s) 34, 85, 107, 121, 155, 216, 228, 246
Ecl136II GAGCTC 2 cut(s) 403, 571
EclXI CGGCCG 2 cut(s) 313, 364
Eco130I CCWWGG 2 cut(s) 700, 849
Eco24I GRGCYC 2 cut(s) 405, 573
Eco52I CGGCCG 2 cut(s) 313, 364
Eco53kI GAGCTC 2 cut(s) 403, 571
Eco57I CTGAAG 1 cut(s) 867
Eco88I CYCGRG 1 cut(s) 404
EcoICRI GAGCTC 2 cut(s) 403, 571
EcoT14I CCWWGG 2 cut(s) 700, 849
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 2 cut(s) 405, 573
EgeI GGCGCC 1 cut(s) 379
EheI GGCGCC 1 cut(s) 379
ErhI CCWWGG 2 cut(s) 700, 849
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 3 cut(s) 499, 622, 704
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 542, 574
FaqI GGGAC 3 cut(s) 209, 257, 333
FatI CATG 3 cut(s) 495, 618, 700
FauI CCCGC 3 cut(s) 185, 233, 263
FauNDI CATATG 1 cut(s) 931
FokI GGATG 1 cut(s) 1012
FriOI GRGCYC 2 cut(s) 405, 573
FspBI CTAG 2 cut(s) 921, 954
GlaI GCGC 3 cut(s) 291, 379, 548
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 344
HaeII RGCGCY 2 cut(s) 293, 381
HaeIII GGCC 4 cut(s) 315, 366, 602, 1130
HapII CCGG 5 cut(s) 186, 312, 316, 367, 375
HgaI GACGC 1 cut(s) 115
HhaI GCGC 3 cut(s) 292, 380, 549
Hin1I GRCGYC 2 cut(s) 126, 378
Hin1II CATG 3 cut(s) 499, 622, 704
Hin6I GCGC 3 cut(s) 290, 378, 547
HinP1I GCGC 3 cut(s) 290, 378, 547
HinfI GANTC 2 cut(s) 204, 1120
HpaII CCGG 5 cut(s) 186, 312, 316, 367, 375
HphI GGTGA 3 cut(s) 511, 679, 902
Hpy166II GTNNAC 3 cut(s) 80, 112, 388
Hpy188I TCNGA 2 cut(s) 886, 1125
Hpy188III TCNNGA 3 cut(s) 406, 724, 738
Hpy8I GTNNAC 3 cut(s) 80, 112, 388
Hpy99I CGWCG 2 cut(s) 110, 809
HpyAV CCTTC 2 cut(s) 859, 1120
HpyCH4III ACNGT 2 cut(s) 77, 646
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 165, 198, 207, 216, 237, 246, 608, 866
HpyF3I CTNAG 5 cut(s) 181, 671, 897, 962, 1037
Hsp92I GRCGYC 2 cut(s) 126, 378
Hsp92II CATG 3 cut(s) 499, 622, 704
HspAI GCGC 3 cut(s) 290, 378, 547
KasI GGCGCC 1 cut(s) 377
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Kzo9I GATC 4 cut(s) 354, 369, 472, 726
LguI GCTCTTC 2 cut(s) 404, 886
LmnI GCTCC 4 cut(s) 224, 454, 789, 1006
Lsp1109I GCAGC 4 cut(s) 140, 417, 420, 517
MaeI CTAG 2 cut(s) 921, 954
MaeIII GTNAC 1 cut(s) 838
MalI GATC 4 cut(s) 356, 371, 474, 728
MbiI CCGCTC 1 cut(s) 414
MboI GATC 4 cut(s) 354, 369, 472, 726
MboII GAAGA 6 cut(s) 316, 421, 469, 484, 644, 873
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 2 cut(s) 405, 573
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 3 cut(s) 161, 606, 1113
MluNI TGGCCA 1 cut(s) 602
Mly113I GGCGCC 1 cut(s) 378
MmeI TCCRAC 1 cut(s) 984
Mox20I TGGCCA 1 cut(s) 602
Mph1103I ATGCAT 1 cut(s) 721
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 560
MscI TGGCCA 1 cut(s) 602
MseI TTAA 2 cut(s) 486, 1112
MslI CAYNNNNRTG 1 cut(s) 1090
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 3 cut(s) 153, 210, 249
MspI CCGG 5 cut(s) 186, 312, 316, 367, 375
MspR9I CCNGG 2 cut(s) 317, 375
Mva1269I GAATGC 1 cut(s) 719
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 9 cut(s) 53, 165, 198, 207, 216, 237, 246, 608, 866
NaeI GCCGGC 1 cut(s) 187
NarI GGCGCC 1 cut(s) 378
NciI CCSGG 2 cut(s) 317, 375
NcoI CCATGG 1 cut(s) 700
NdeI CATATG 1 cut(s) 931
NdeII GATC 4 cut(s) 354, 369, 472, 726
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 3 cut(s) 499, 622, 704
NlaIV GGNNCC 4 cut(s) 220, 371, 379, 1008
NmeAIII GCCGAG 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 721
NspV TTCGAA 1 cut(s) 1060
PaeR7I CTCGAG 1 cut(s) 404
PciSI GCTCTTC 2 cut(s) 404, 886
PctI GAATGC 1 cut(s) 719
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 2 cut(s) 204, 1120
PflMI CCANNNNNTGG 1 cut(s) 665
Ple19I CGATCG 1 cut(s) 357
PluTI GGCGCC 1 cut(s) 381
Psp124BI GAGCTC 2 cut(s) 405, 573
PspFI CCCAGC 1 cut(s) 443
PspN4I GGNNCC 4 cut(s) 220, 371, 379, 1008
PspPI GGNCC 1 cut(s) 1129
PstI CTGCAG 2 cut(s) 438, 535
PsuI RGATCY 1 cut(s) 369
PvuI CGATCG 1 cut(s) 357
RsaI GTAC 2 cut(s) 539, 811
RsaNI GTAC 2 cut(s) 538, 810
RseI CAYNNNNRTG 1 cut(s) 1090
SacI GAGCTC 2 cut(s) 405, 573
SapI GCTCTTC 2 cut(s) 404, 886
SaqAI TTAA 2 cut(s) 486, 1112
Sau3AI GATC 4 cut(s) 354, 369, 472, 726
Sau96I GGNCC 1 cut(s) 1129
ScrFI CCNGG 2 cut(s) 317, 375
SduI GDGCHC 2 cut(s) 405, 573
SfcI CTRYAG 3 cut(s) 434, 531, 909
SfoI GGCGCC 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 404
SfuI TTCGAA 1 cut(s) 1060
SlaI CTCGAG 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 1090
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 3 cut(s) 161, 606, 1113
SspDI GGCGCC 1 cut(s) 377
SspMI CTAG 2 cut(s) 921, 954
SstI GAGCTC 2 cut(s) 405, 573
StyD4I CCNGG 2 cut(s) 315, 373
StyI CCWWGG 2 cut(s) 700, 849
TaaI ACNGT 2 cut(s) 77, 646
TaqI TCGA 4 cut(s) 357, 405, 573, 1060
TasI AATT 3 cut(s) 161, 606, 1113
TfiI GAWTC 2 cut(s) 204, 1120
Tru1I TTAA 2 cut(s) 486, 1112
Tru9I TTAA 2 cut(s) 486, 1112
TscAI CASTG 1 cut(s) 828
TseI GCWGC 4 cut(s) 153, 430, 433, 530
TspDTI ATGAA 5 cut(s) 10, 484, 607, 807, 1074
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 828
Van91I CCANNNNNTGG 1 cut(s) 665
XhoI CTCGAG 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 2 cut(s) 921, 954
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.