pycom11g16650

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002218
Physical Location & Seq
Forward (+)
18368522 .. 18371586
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g16650.3

Sequence Viewer

Length: 888 bp
ATGGCGATCGCCTTCTGCTTCGCTCCCTCTTCCTCCGCCGCATCCTCTTCCTCCCTCTCCAAACTCAATCCCCACCGTCCATTTCTCTCCGCCTCCGCCTCCTCGCCCCTCCTCCACCTCCGCCTCACCGTCACCCCTCCCTCCCTCACCCACCGCCACCGCCAGTTCCGCCGCATCCTCTTCTCCGACGCCGGCGACGACGGGGGCATTAACGGACGTGACTCCTCAGGAGGGGGCGGCGGCGGAGATGACGGCGACAGCGACGGAGGGTCCGACAATGCCGGTGGAAAGAACAGGGCGGAGGCGTTGATGGTGTTGGCGGAGTCTAAGCGGGGGTTGGAGAGCTTGCCCAAGGACTTGGCTGCTGCGGTCCAGGCGGGTCGGATCCCCGGGTCGGTTGTGGGGCGGTACTTTGAGCTGGAGAAGTCGGGTCTGTTCCGGTGGTTGATGCAATTCGCTGGGTTTAGAGAGAGGTTGCTCGCTGATGATCTTTTCTTTGCTAAGGTTTTCATGGAATGTGGCGTTGGTCTCTTCACTAAGACTGCTGCAGAGTACGAGAGGCGGAGAGAGAACTTTTTCAACGAGCTGGAAGTTGTTTTTGCAGATGTGGTAATGGCCATACTTGCAGATTTCATGCTTGTTTATCTTCCTGCCCCAACTGTATCTCTTCGACCTCCACTTGGGCTCAATGCAGGAGCAATCACTAGGTTTTTCCATGGCTGCCCCGACAATGCCTTCCAGCGCTATGTCTGGAACATCATACTCATTATTACAGAGGATTGGTGGAGTAGTGAGAAATGGGACCAAGCTATTTGCTGTTGGTACTGCTTCGTCACTGGTTGGCACAGCTGTGACAAATGCCTTGATCAACGCAAGGAAGGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

296

Amino Acids

32.47

Weight (kDa)

6.09

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 379, 392
AcoI YGGCCR 1 cut(s) 615
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 3 cut(s) 410, 554, 824
AfeI AGCGCT 1 cut(s) 743
AfiI CCNNNNNNNGG 3 cut(s) 231, 394, 680
AgsI TTSAA 1 cut(s) 580
AhdI GACNNNNNGTC 1 cut(s) 268
AjiI CACGTC 1 cut(s) 218
AjnI CCWGG 1 cut(s) 372
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AleI CACNNNNGTG 1 cut(s) 849
AluBI AGCT 5 cut(s) 345, 418, 586, 809, 849
AluI AGCT 5 cut(s) 345, 418, 586, 809, 849
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 2 cut(s) 379, 392
Ama87I CYCGRG 1 cut(s) 389
Aor51HI AGCGCT 1 cut(s) 743
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 4 cut(s) 362, 365, 545, 720
AsiSI GCGATCGC 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 575
AspLEI GCGC 1 cut(s) 744
AspS9I GGNCC 3 cut(s) 270, 370, 802
AsuC2I CCSGG 2 cut(s) 390, 391
AsuHPI GGTGA 3 cut(s) 118, 124, 139
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 3 cut(s) 270, 370, 802
AxyI CCTNAGG 1 cut(s) 226
BalI TGGCCA 1 cut(s) 617
BamHI GGATCC 1 cut(s) 384
BanII GRGCYC 1 cut(s) 687
BbvI GCAGC 4 cut(s) 349, 352, 532, 707
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 1 cut(s) 865
BcnI CCSGG 2 cut(s) 390, 391
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 745
BisI GCNGC 8 cut(s) 39, 172, 238, 241, 363, 366, 546, 721
BlsI GCNGC 8 cut(s) 40, 173, 239, 242, 364, 367, 547, 722
Bme1390I CCNGG 3 cut(s) 374, 390, 391
Bme18I GGWCC 3 cut(s) 270, 370, 802
BmeRI GACNNNNNGTC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 389
BmgBI CACGTC 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 270, 370, 802
BmiI GGNNCC 3 cut(s) 271, 386, 803
BmrFI CCNGG 3 cut(s) 374, 390, 391
BmsI GCATC 3 cut(s) 50, 183, 438
BpmI CTGGAG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 2 cut(s) 390, 391
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 4 cut(s) 351, 388, 389, 715
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 394, 680
Bse118I RCCGGY 2 cut(s) 191, 281
Bse1I ACTGG 2 cut(s) 163, 841
Bse21I CCTNAGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 4 cut(s) 351, 388, 389, 715
BseGI GGATG 2 cut(s) 41, 174
BseLI CCNNNNNNNGG 3 cut(s) 231, 394, 680
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 163, 841
BseRI GAGGAG 3 cut(s) 91, 101, 214
BseXI GCAGC 4 cut(s) 349, 352, 532, 707
BseYI CCCAGC 1 cut(s) 458
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 617
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 4 cut(s) 192, 282, 390, 439
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 3 cut(s) 231, 394, 680
BsmAI GTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 815
BsnI GGCC 1 cut(s) 617
Bso31I GGTCTC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 4 cut(s) 6, 384, 487, 865
Bsp19I CCATGG 1 cut(s) 715
BspANI GGCC 1 cut(s) 617
BspCNI CTCAG 1 cut(s) 239
BspLI GGNNCC 3 cut(s) 271, 386, 803
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 2 cut(s) 379, 392
BspTNI GGTCTC 1 cut(s) 533
BsrFI RCCGGY 2 cut(s) 191, 281
BsrI ACTGG 2 cut(s) 163, 841
BssAI RCCGGY 2 cut(s) 191, 281
BssECI CCNNGG 4 cut(s) 351, 388, 389, 715
BssMI GATC 4 cut(s) 6, 384, 487, 865
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 351, 715
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 3 cut(s) 77, 130, 661
Bst6I CTCTTC 5 cut(s) 34, 52, 185, 536, 672
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 193, 347, 480
BstDEI CTNAG 4 cut(s) 226, 327, 501, 537
BstDSI CCRYGG 1 cut(s) 715
BstF5I GGATG 2 cut(s) 41, 174
BstH2I RGCGCY 1 cut(s) 745
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 4 cut(s) 9, 387, 490, 868
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 4 cut(s) 6, 384, 487, 865
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 168, 374, 623, 879
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 3 cut(s) 372, 388, 389
BstSFI CTRYAG 1 cut(s) 546
BstV1I GCAGC 4 cut(s) 349, 352, 532, 707
BstX2I RGATCY 1 cut(s) 384
BstXI CCANNNNNNTGG 1 cut(s) 358
BstYI RGATCY 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 226
BsuRI GGCC 1 cut(s) 617
BtgI CCRYGG 1 cut(s) 715
BtrI CACGTC 1 cut(s) 218
BtsCI GGATG 2 cut(s) 41, 174
BtsIMutI CAGTG 1 cut(s) 834
Cac8I GCNNGC 3 cut(s) 193, 347, 480
CfoI GCGC 1 cut(s) 744
Cfr10I RCCGGY 2 cut(s) 191, 281
Cfr13I GGNCC 3 cut(s) 270, 370, 802
Cfr9I CCCGGG 1 cut(s) 389
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 409, 553, 823
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 3 cut(s) 511, 634, 716
CviQI GTAC 3 cut(s) 409, 553, 823
DdeI CTNAG 4 cut(s) 226, 327, 501, 537
DpnI GATC 4 cut(s) 8, 386, 489, 867
DpnII GATC 4 cut(s) 6, 384, 487, 865
DriI GACNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 5 cut(s) 34, 52, 185, 536, 672
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 5 cut(s) 34, 52, 185, 536, 672
EciI GGCGGA 9 cut(s) 25, 79, 85, 110, 158, 258, 314, 335, 577
Eco130I CCWWGG 2 cut(s) 351, 715
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 270, 370, 802
Eco47III AGCGCT 1 cut(s) 743
Eco81I CCTNAGG 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 351, 715
EcoT38I GRGCYC 1 cut(s) 687
ErhI CCWWGG 2 cut(s) 351, 715
FaeI CATG 3 cut(s) 514, 637, 719
FaiI YATR 6 cut(s) 512, 620, 635, 717, 747, 761
FaqI GGGAC 1 cut(s) 815
FatI CATG 3 cut(s) 510, 633, 715
FauI CCCGC 2 cut(s) 324, 370
FbaI TGATCA 1 cut(s) 865
Fnu4HI GCNGC 8 cut(s) 39, 172, 238, 241, 363, 366, 546, 721
FokI GGATG 2 cut(s) 28, 161
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 8 cut(s) 39, 172, 238, 241, 363, 366, 546, 721
FspBI CTAG 1 cut(s) 705
GlaI GCGC 1 cut(s) 743
GluI GCNGC 8 cut(s) 39, 172, 238, 241, 363, 366, 546, 721
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 440
HaeII RGCGCY 1 cut(s) 745
HaeIII GGCC 1 cut(s) 617
HapII CCGG 4 cut(s) 192, 282, 390, 439
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 744
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 514, 637, 719
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HinfI GANTC 2 cut(s) 221, 323
HpaII CCGG 4 cut(s) 192, 282, 390, 439
HphI GGTGA 3 cut(s) 118, 124, 139
Hpy188I TCNGA 3 cut(s) 187, 274, 384
Hpy188III TCNNGA 2 cut(s) 228, 751
Hpy99I CGWCG 4 cut(s) 191, 200, 203, 266
HpyAV CCTTC 3 cut(s) 22, 745, 872
HpyCH4III ACNGT 3 cut(s) 77, 130, 661
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 5 cut(s) 451, 548, 602, 626, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 168, 374, 623, 879
HpyF3I CTNAG 4 cut(s) 226, 327, 501, 537
HpySE526I ACGT 1 cut(s) 217
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 514, 637, 719
HspAI GCGC 1 cut(s) 742
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 865
Kzo9I GATC 4 cut(s) 6, 384, 487, 865
LmnI GCTCC 2 cut(s) 28, 695
Lsp1109I GCAGC 4 cut(s) 349, 352, 532, 707
LweI GCATC 3 cut(s) 50, 183, 438
MaeI CTAG 1 cut(s) 705
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 4 cut(s) 130, 218, 832, 851
MalI GATC 4 cut(s) 8, 386, 489, 867
MboI GATC 4 cut(s) 6, 384, 487, 865
MboII GAAGA 6 cut(s) 21, 39, 172, 523, 638, 659
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 687
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 1 cut(s) 452
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 2 cut(s) 215, 332
MmeI TCCRAC 4 cut(s) 210, 297, 318, 362
Mox20I TGGCCA 1 cut(s) 617
MreI CGCCGGCG 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 575
MscI TGGCCA 1 cut(s) 617
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 849
Msp20I TGGCCA 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 849
MspI CCGG 4 cut(s) 192, 282, 390, 439
MspR9I CCNGG 3 cut(s) 374, 390, 391
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 4 cut(s) 168, 374, 623, 879
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 2 cut(s) 390, 391
NcoI CCATGG 1 cut(s) 715
NdeII GATC 4 cut(s) 6, 384, 487, 865
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 3 cut(s) 514, 637, 719
NlaIV GGNNCC 3 cut(s) 271, 386, 803
NmuCI GTSAC 4 cut(s) 130, 218, 832, 851
OliI CACNNNNGTG 1 cut(s) 849
PcsI WCGNNNNNNNCGW 3 cut(s) 195, 258, 270
PdiI GCCGGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 575
PkrI GCNGC 8 cut(s) 40, 173, 239, 242, 364, 367, 547, 722
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 2 cut(s) 215, 331
PpsI GAGTC 2 cut(s) 215, 331
Psp6I CCWGG 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 3 cut(s) 271, 386, 803
PspPI GGNCC 3 cut(s) 270, 370, 802
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 384
PvuI CGATCG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 849
RgaI GCGATCGC 1 cut(s) 9
RsaI GTAC 3 cut(s) 410, 554, 824
RsaNI GTAC 3 cut(s) 409, 553, 823
RseI CAYNNNNRTG 1 cut(s) 849
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 8 cut(s) 39, 172, 238, 241, 363, 366, 546, 721
Sau3AI GATC 4 cut(s) 6, 384, 487, 865
Sau96I GGNCC 3 cut(s) 270, 370, 802
SchI GAGTC 2 cut(s) 215, 332
ScrFI CCNGG 3 cut(s) 374, 390, 391
SduI GDGCHC 1 cut(s) 687
SfaAI GCGATCGC 1 cut(s) 9
SfaNI GCATC 3 cut(s) 50, 183, 438
SfcI CTRYAG 1 cut(s) 546
SgfI GCGATCGC 1 cut(s) 9
SgrAI CRCCGGYG 1 cut(s) 191
SinI GGWCC 3 cut(s) 270, 370, 802
SmaI CCCGGG 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 849
Sse9I AATT 1 cut(s) 452
SspMI CTAG 1 cut(s) 705
StyD4I CCNGG 3 cut(s) 372, 388, 389
StyI CCWWGG 2 cut(s) 351, 715
TaaI ACNGT 3 cut(s) 77, 130, 661
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 670
TasI AATT 1 cut(s) 452
TauI GCSGC 4 cut(s) 41, 174, 240, 243
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 841
TseFI GTSAC 4 cut(s) 130, 218, 832, 851
TseI GCWGC 4 cut(s) 362, 365, 545, 720
Tsp45I GTSAC 4 cut(s) 130, 218, 832, 851
TspDTI ATGAA 2 cut(s) 499, 622
TspGWI ACGGA 2 cut(s) 228, 279
TspMI CCCGGG 1 cut(s) 389
TspRI CASTG 1 cut(s) 841
VpaK11BI GGWCC 3 cut(s) 270, 370, 802
XmaI CCCGGG 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 575
XspI CTAG 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.