Rh5AG342000

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002218
Physical Location & Seq
Reverse (-)
55909913 .. 55914727
4815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG342000.1

Sequence Viewer

Length: 879 bp
ATGGCAATCGCCTTCTGCTTCACTCCCTCCTCCTCCTCCTCTTCCTCCTCCGCCTCCAAGTTCAATCCGCACCGACCGATTCCGTCCCTCTCCGCCTCCCCCGTCTTGCACCTCCGCCTCAGCGTGTCCCCGCCCTCTCTGGCGCACCGCGGCCGCCAGTTCCGGCGCGTGCTGTTCGCCGCCGCTGGCGGAGACGGGGGATTTGGCGGCGGAGGACACTCCGGAGGCGGTAGCGGCGGGGATCACGGCGGCGAGGACAATGCCGGCGGGAAAAACAAGTTGGAGGCCCTGATGGTGTTGAAGGAGTCCGGGCGGGGGTTGGAGAGCTTGCCGAAGGACTTGGCGGCGGCGATCGAGGACGGGCGGATCCCCGGCGCGGTTGTGGATAAGTATTTTGAGCTGGAGAAGAACGGCTGCTTTTCGTGGCTGCTGCAGTTTGCTGGGTTTAGGGAGCGTTTGTTGGCTGATGATCTTTTCTTGTTTAAGGTCTTCATGGAGTGTGGTGTTGGTCTTTTCACCAAGACTGCTGCAGAGTACCAGAAACGCCAAGAAAACTTTTTCAATGAGCTCGAAGTTGTGTTTGCAGATGTGGTAATGGCCATAATTGCAGATTTCATGCTTGTATATCTTCCTGCCCCAACTGTTTCTCTTCGACCACCAGTTGCACTCAGCGCAGGGGCAATCACCAAGTTTTTCCATGGTTGCCCTGATAATGCATTCCAGATTGCTATCTCAGGAACATCATACTCCTTATTTCAGAGGATTGGTGCAGTAGTGAGAAATGGGAGCAAGCTCTTCGTTGTTGGTACTGCTTCATCACTGGTTAGTATTTTCCTAACTTCTTGTTGCTGGATCCTTTGGAAATTCCTTTGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

292

Amino Acids

31.24

Weight (kDa)

8.46

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 151 - 281 3.1e-42 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 150, 168, 377
AccIII TCCGGA 1 cut(s) 221
AclWI GGATC 5 cut(s) 249, 361, 374, 847, 860
AcoI YGGCCR 2 cut(s) 151, 597
AcsI RAATTY 1 cut(s) 863
AfaI GTAC 2 cut(s) 536, 808
AfiI CCNNNNNNNGG 2 cut(s) 315, 376
AgsI TTSAA 3 cut(s) 64, 301, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 4 cut(s) 327, 400, 568, 793
AluI AGCT 4 cut(s) 327, 400, 568, 793
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 5 cut(s) 249, 361, 374, 847, 860
Aor13HI TCCGGA 1 cut(s) 221
AoxI GGCC 3 cut(s) 151, 285, 597
ApeKI GCWGC 4 cut(s) 414, 427, 430, 527
ApoI RAATTY 1 cut(s) 863
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspLEI GCGC 4 cut(s) 145, 168, 377, 674
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 2 cut(s) 310, 372
AsuHPI GGTGA 2 cut(s) 508, 676
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 2 cut(s) 366, 852
BanII GRGCYC 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 570
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 4 cut(s) 401, 414, 417, 514
BccI CCATC 1 cut(s) 286
BceAI ACGGC 2 cut(s) 262, 427
BcgI CGANNNNNNTGC 4 cut(s) 242, 276, 778, 812
BcnI CCSGG 2 cut(s) 310, 372
BcoDI GTCTC 1 cut(s) 186
BfmI CTRYAG 2 cut(s) 431, 528
Bme1390I CCNGG 2 cut(s) 310, 372
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 368, 854
BmrFI CCNGG 2 cut(s) 310, 372
BpiI GAAGAC 1 cut(s) 481
BpmI CTGGAG 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 310, 372
BsaBI GATNNNNATC 1 cut(s) 728
BsaJI CCNNGG 3 cut(s) 148, 370, 697
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 376
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 3 cut(s) 157, 659, 825
Bse8I GATNNNNATC 1 cut(s) 728
BseAI TCCGGA 1 cut(s) 221
BseDI CCNNGG 3 cut(s) 148, 370, 697
BseJI GATNNNNATC 1 cut(s) 728
BseLI CCNNNNNNNGG 2 cut(s) 315, 376
BseMII CTCAG 3 cut(s) 133, 682, 747
BseNI ACTGG 3 cut(s) 157, 659, 825
BseRI GAGGAG 5 cut(s) 19, 22, 25, 28, 37
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 4 cut(s) 401, 414, 417, 514
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 789
Bsh1236I CGCG 3 cut(s) 150, 168, 377
Bsh1285I CGRYCG 3 cut(s) 77, 154, 354
BshFI GGCC 3 cut(s) 153, 287, 599
BsiEI CGRYCG 3 cut(s) 77, 154, 354
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 5 cut(s) 163, 222, 264, 309, 372
BslFI GGGAC 2 cut(s) 70, 112
BslI CCNNNNNNNGG 2 cut(s) 315, 376
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 2 cut(s) 70, 112
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 3 cut(s) 153, 287, 599
Bsp1286I GDGCHC 1 cut(s) 570
Bsp13I TCCGGA 1 cut(s) 221
Bsp143I GATC 5 cut(s) 241, 351, 366, 469, 852
Bsp19I CCATGG 1 cut(s) 697
BspANI GGCC 3 cut(s) 153, 287, 599
BspCNI CTCAG 3 cut(s) 132, 681, 746
BspEI TCCGGA 1 cut(s) 221
BspFNI CGCG 3 cut(s) 150, 168, 377
BspLI GGNNCC 2 cut(s) 368, 854
BspMAI CTGCAG 2 cut(s) 435, 532
BspPI GGATC 5 cut(s) 249, 361, 374, 847, 860
BspQI GCTCTTC 1 cut(s) 800
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 3 cut(s) 157, 659, 825
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 148, 370, 697
BssMI GATC 5 cut(s) 241, 351, 366, 469, 852
BssT1I CCWWGG 1 cut(s) 697
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 3 cut(s) 46, 654, 800
BstC8I GCNNGC 5 cut(s) 170, 187, 265, 329, 791
BstDEI CTNAG 3 cut(s) 119, 668, 733
BstDSI CCRYGG 2 cut(s) 148, 697
BstFNI CGCG 3 cut(s) 150, 168, 377
BstHHI GCGC 4 cut(s) 145, 168, 377, 674
BstKTI GATC 5 cut(s) 244, 354, 369, 472, 855
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 5 cut(s) 241, 351, 366, 469, 852
BstMCI CGRYCG 3 cut(s) 77, 154, 354
BstMWI GCNNNNNNNGC 3 cut(s) 234, 605, 671
BstSCI CCNGG 2 cut(s) 308, 370
BstSFI CTRYAG 2 cut(s) 431, 528
BstUI CGCG 3 cut(s) 150, 168, 377
BstV1I GCAGC 4 cut(s) 401, 414, 417, 514
BstV2I GAAGAC 1 cut(s) 481
BstX2I RGATCY 2 cut(s) 366, 852
BstYI RGATCY 2 cut(s) 366, 852
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 3 cut(s) 153, 287, 599
BtgI CCRYGG 2 cut(s) 148, 697
BtsIMutI CAGTG 1 cut(s) 818
Cac8I GCNNGC 5 cut(s) 170, 187, 265, 329, 791
CciNI GCGGCCGC 1 cut(s) 151
CfoI GCGC 4 cut(s) 145, 168, 377, 674
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 286
Cfr42I CCGCGG 1 cut(s) 151
Csp6I GTAC 2 cut(s) 535, 807
CviAII CATG 3 cut(s) 493, 616, 698
CviQI GTAC 2 cut(s) 535, 807
DdeI CTNAG 3 cut(s) 119, 668, 733
DpnI GATC 5 cut(s) 243, 353, 368, 471, 854
DpnII GATC 5 cut(s) 241, 351, 366, 469, 852
EaeI YGGCCR 2 cut(s) 151, 597
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 3 cut(s) 46, 654, 800
EarI CTCTTC 3 cut(s) 46, 654, 800
EciI GGCGGA 6 cut(s) 40, 82, 104, 204, 225, 379
Ecl136II GAGCTC 1 cut(s) 568
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 697
Eco24I GRGCYC 1 cut(s) 570
Eco52I CGGCCG 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 568
EcoICRI GAGCTC 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 697
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 697
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 3 cut(s) 496, 619, 701
FaiI YATR 6 cut(s) 494, 602, 617, 625, 699, 745
FaqI GGGAC 2 cut(s) 70, 112
FatI CATG 3 cut(s) 492, 615, 697
FauI CCCGC 4 cut(s) 138, 230, 260, 306
FriOI GRGCYC 1 cut(s) 570
GlaI GCGC 4 cut(s) 144, 167, 376, 673
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 3 cut(s) 153, 287, 599
HapII CCGG 5 cut(s) 163, 222, 264, 309, 372
HhaI GCGC 4 cut(s) 145, 168, 377, 674
Hin1II CATG 3 cut(s) 496, 619, 701
Hin6I GCGC 4 cut(s) 143, 166, 375, 672
HinP1I GCGC 4 cut(s) 143, 166, 375, 672
HinfI GANTC 2 cut(s) 79, 305
HpaII CCGG 5 cut(s) 163, 222, 264, 309, 372
HphI GGTGA 2 cut(s) 508, 676
Hpy188I TCNGA 1 cut(s) 759
Hpy188III TCNNGA 3 cut(s) 222, 721, 735
HpyAV CCTTC 3 cut(s) 22, 295, 328
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4V TGCA 8 cut(s) 109, 433, 530, 584, 608, 665, 716, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 605, 671
HpyF3I CTNAG 3 cut(s) 119, 668, 733
Hsp92II CATG 3 cut(s) 496, 619, 701
HspAI GCGC 4 cut(s) 143, 166, 375, 672
Kpn2I TCCGGA 1 cut(s) 221
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
KspI CCGCGG 1 cut(s) 151
Kzo9I GATC 5 cut(s) 241, 351, 366, 469, 852
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 2 cut(s) 451, 786
Lsp1109I GCAGC 4 cut(s) 401, 414, 417, 514
MalI GATC 5 cut(s) 243, 353, 368, 471, 854
MboI GATC 5 cut(s) 241, 351, 366, 469, 852
MboII GAAGA 6 cut(s) 33, 418, 481, 620, 641, 787
MflI RGATCY 2 cut(s) 366, 852
MhlI GDGCHC 1 cut(s) 570
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 2 cut(s) 603, 863
MluNI TGGCCA 1 cut(s) 599
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 2 cut(s) 261, 300
Mox20I TGGCCA 1 cut(s) 599
Mph1103I ATGCAT 1 cut(s) 718
MroI TCCGGA 1 cut(s) 221
MroNI GCCGGC 1 cut(s) 263
MscI TGGCCA 1 cut(s) 599
MseI TTAA 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 599
MspA1I CMGCKG 2 cut(s) 150, 185
MspI CCGG 5 cut(s) 163, 222, 264, 309, 372
MspR9I CCNGG 2 cut(s) 310, 372
Mva1269I GAATGC 1 cut(s) 716
MvnI CGCG 3 cut(s) 150, 168, 377
MwoI GCNNNNNNNGC 3 cut(s) 234, 605, 671
NaeI GCCGGC 1 cut(s) 265
NciI CCSGG 2 cut(s) 310, 372
NcoI CCATGG 1 cut(s) 697
NdeII GATC 5 cut(s) 241, 351, 366, 469, 852
NgoMIV GCCGGC 1 cut(s) 263
NlaIII CATG 3 cut(s) 496, 619, 701
NlaIV GGNNCC 2 cut(s) 368, 854
NotI GCGGCCGC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 800
PctI GAATGC 1 cut(s) 716
PdiI GCCGGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 79
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 368, 854
PspPI GGNCC 1 cut(s) 286
PstI CTGCAG 2 cut(s) 435, 532
PsuI RGATCY 2 cut(s) 366, 852
PvuI CGATCG 1 cut(s) 354
RsaI GTAC 2 cut(s) 536, 808
RsaNI GTAC 2 cut(s) 535, 807
SacI GAGCTC 1 cut(s) 570
SacII CCGCGG 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 1 cut(s) 483
Sau3AI GATC 5 cut(s) 241, 351, 366, 469, 852
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 2 cut(s) 310, 372
SduI GDGCHC 1 cut(s) 570
SetI ASST 6 cut(s) 114, 329, 402, 489, 570, 795
SfcI CTRYAG 2 cut(s) 431, 528
Sfr303I CCGCGG 1 cut(s) 151
SgrBI CCGCGG 1 cut(s) 151
Sse9I AATT 2 cut(s) 603, 863
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 2 cut(s) 308, 370
StyI CCWWGG 1 cut(s) 697
TaaI ACNGT 1 cut(s) 643
TaqI TCGA 3 cut(s) 354, 570, 652
TaqII GACCGA 1 cut(s) 91
TasI AATT 2 cut(s) 603, 863
TauI GCSGC 9 cut(s) 153, 156, 182, 185, 210, 237, 252, 347, 350
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 825
TseI GCWGC 4 cut(s) 414, 427, 430, 527
TspDTI ATGAA 3 cut(s) 481, 604, 804
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 1 cut(s) 825
XapI RAATTY 1 cut(s) 863
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.