RLG00000030572

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002218
Physical Location & Seq
Reverse (-)
63665807 .. 63668526
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030572

Sequence Viewer

Length: 1149 bp
ATGGCGGTCCCTACCTTTTCCAATTTCTCCACTTTCACCACTCGCATACCCTCTCTCTCTTCTTCTTCTTCACCAAATCACCACTCTTTCCCGCGCACCACAAGCTTCGCTTTCACTATCCTCACCAGAACTCCCACCTCCCTCTCTCTCGCCACGTCACCGCGCCTCCCCCGCTCCTCTTTCGCCACGTGTTTCTCCTCCGGCGGCCCACCTTCCTCCGGCGGCGGCGGAGGCGGAGGAGGAGGAGATCACAGCAATGGCGGTGGTGACGGAGAGGGAGGGGAGGACAGAGAGAGGAACAAAAAGGAGGCGGCGATGGCGATTGCGGAGGCGGGAAGGACGGCGGAGAGTCTGCCGAAGGACTTGGCGGCGGCGGTGGAGGCTGGTCGGGTCCCCGGGTTGATTATGAAGAGGTTCTTTGAGCTGGAGAAGTCGGTGATCTTCAGGTGGCTGCTTCAGTTTGATGGATTCAAGGAGCGGTTGCTGGCCGATGACTTGTTCTTGACCAAAGTTGGCATCGAGTGCGGTGTTGGAATTTTCACCAAGACTGCTGCAGAGTTGGAGCGGCGAAGAGAAAAATTTACCAAGGAGCTGGATTTTGTGTTTGCGGATGTGGTGATGGCCATTATAGCTGATTTTATGCTTGTCTGGCTTCCTGCTCCTACTGTTTCACTTCGCAAACCTCTTGTTGTCAGTGCTGGGCGTGTTGCTAAGTTCTTCTATGGCTGTCCTGACAATGCATTTCAGGTAGCTTTGGCTGGAACATCTTACTCGTTCTTACAGAGAATAGGCGCAATATTGAGAAATGGAGCAAAACTGTTCGTGGTTGGGACTGGTGCATCTCTGATTGGTACTGGTGTAACAAATGCATTGATTGCTTTAAGAAAAGCTTTGGACAAATCCTTTCTTGGTGAAGCGGAAGATGTTCCCATATTATCAACTAGTGCAGCCTATGGGGTCTATATGGCAGTATCTAGCAATCTAAGATACCAAGTTCTCGCTGGAATAATCGAACAACGTATTCTAGAACCCTTGCTACACCAACACAAGCTTGCACTGAGTGCAATTTGCTTTGCTGTTCGAACTGGAAACACATTTTTGGGGTCCTTGATGTGGGTTGATTATGCACGCTGGATTGGAATTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

383

Amino Acids

40.97

Weight (kDa)

9.26

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 159 - 336 1.1e-65 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 174, 478, 565
AccII CGCG 2 cut(s) 94, 163
AcoI YGGCCR 2 cut(s) 486, 621
AcsI RAATTY 3 cut(s) 534, 578, 1140
AcuI CTGAAG 2 cut(s) 427, 440
AcvI CACGTG 1 cut(s) 189
AdeI CACNNNGTG 1 cut(s) 1061
AfaI GTAC 1 cut(s) 853
AfiI CCNNNNNNNGG 2 cut(s) 218, 1113
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 2 cut(s) 472, 1145
AhlI ACTAGT 1 cut(s) 941
AjiI CACGTC 1 cut(s) 156
AluBI AGCT 7 cut(s) 105, 424, 592, 632, 752, 890, 1051
AluI AGCT 7 cut(s) 105, 424, 592, 632, 752, 890, 1051
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 3 cut(s) 205, 486, 621
ApeKI GCWGC 3 cut(s) 451, 551, 947
ApoI RAATTY 3 cut(s) 534, 578, 1140
Asp700I GAANNNNTTC 2 cut(s) 413, 924
AspLEI GCGC 3 cut(s) 96, 165, 794
AspS9I GGNCC 4 cut(s) 7, 206, 391, 1104
AsuC2I CCSGG 2 cut(s) 396, 397
AsuII TTCGAA 1 cut(s) 1081
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 3 cut(s) 7, 391, 1104
BaeI ACNNNNGTAYC 2 cut(s) 843, 876
BalI TGGCCA 1 cut(s) 623
BbrPI CACGTG 1 cut(s) 189
BbvI GCAGC 3 cut(s) 438, 538, 959
BccI CCATC 3 cut(s) 310, 458, 613
BceAI ACGGC 1 cut(s) 357
BcnI CCSGG 2 cut(s) 396, 397
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 3 cut(s) 942, 975, 1025
BfmI CTRYAG 1 cut(s) 552
Bme1390I CCNGG 2 cut(s) 396, 397
Bme18I GGWCC 3 cut(s) 7, 391, 1104
BmeT110I CYCGRG 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 156
BmgT120I GGNCC 4 cut(s) 7, 206, 391, 1104
BmiI GGNNCC 4 cut(s) 9, 392, 393, 1105
BmrFI CCNGG 2 cut(s) 396, 397
BmsI GCATC 2 cut(s) 525, 848
BpmI CTGGAG 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 1081
BpuMI CCSGG 2 cut(s) 396, 397
BsaAI YACGTR 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 394, 395, 585
BsaXI ACNNNNNCTCC 4 cut(s) 115, 145, 150, 180
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 1113
Bse1I ACTGG 3 cut(s) 838, 859, 1090
Bse3DI GCAATG 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 394, 395, 585
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 2 cut(s) 218, 1113
BseMI GCAATG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 1049
BseNI ACTGG 3 cut(s) 838, 859, 1090
BseRI GAGGAG 5 cut(s) 166, 187, 252, 255, 258
BseXI GCAGC 3 cut(s) 438, 538, 959
BseYI CCCAGC 1 cut(s) 698
BsgI GTGCAG 1 cut(s) 966
Bsh1236I CGCG 2 cut(s) 94, 163
BshFI GGCC 3 cut(s) 207, 488, 623
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 3 cut(s) 201, 219, 396
BslFI GGGAC 2 cut(s) 377, 844
BslI CCNNNNNNNGG 2 cut(s) 218, 1113
BsmFI GGGAC 2 cut(s) 377, 844
BsnI GGCC 3 cut(s) 207, 488, 623
BsoBI CYCGRG 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 1081
Bsp143I GATC 2 cut(s) 247, 438
BspANI GGCC 3 cut(s) 207, 488, 623
BspCNI CTCAG 1 cut(s) 1050
BspFNI CGCG 2 cut(s) 94, 163
BspLI GGNNCC 4 cut(s) 9, 392, 393, 1105
BspMAI CTGCAG 1 cut(s) 556
BspT104I TTCGAA 1 cut(s) 1081
BsrBI CCGCTC 3 cut(s) 174, 478, 565
BsrDI GCAATG 1 cut(s) 262
BsrI ACTGG 3 cut(s) 838, 859, 1090
BssECI CCNNGG 3 cut(s) 394, 395, 585
BssMI GATC 2 cut(s) 247, 438
BssT1I CCWWGG 1 cut(s) 585
Bst4CI ACNGT 2 cut(s) 667, 819
Bst6I CTCTTC 3 cut(s) 64, 404, 565
BstAPI GCANNNNNTGC 3 cut(s) 522, 875, 1061
BstBAI YACGTR 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 1081
BstC8I GCNNGC 3 cut(s) 486, 1053, 1129
BstDEI CTNAG 3 cut(s) 711, 983, 1058
BstF5I GGATG 1 cut(s) 616
BstFNI CGCG 2 cut(s) 94, 163
BstHHI GCGC 3 cut(s) 96, 165, 794
BstKTI GATC 2 cut(s) 250, 441
BstMBI GATC 2 cut(s) 247, 438
BstSCI CCNGG 2 cut(s) 394, 395
BstSFI CTRYAG 1 cut(s) 552
BstUI CGCG 2 cut(s) 94, 163
BstV1I GCAGC 3 cut(s) 438, 538, 959
BstXI CCANNNNNNTGG 1 cut(s) 592
BsuRI GGCC 3 cut(s) 207, 488, 623
BtgZI GCGATG 1 cut(s) 329
BtrI CACGTC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 2 cut(s) 700, 1055
Cac8I GCNNGC 3 cut(s) 486, 1053, 1129
CfoI GCGC 3 cut(s) 96, 165, 794
Cfr13I GGNCC 4 cut(s) 7, 206, 391, 1104
Cfr9I CCCGGG 1 cut(s) 395
Csp6I GTAC 1 cut(s) 852
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviQI GTAC 1 cut(s) 852
DdeI CTNAG 3 cut(s) 711, 983, 1058
DpnI GATC 2 cut(s) 249, 440
DpnII GATC 2 cut(s) 247, 438
DraIII CACNNNGTG 1 cut(s) 1061
EaeI YGGCCR 2 cut(s) 486, 621
Eam1104I CTCTTC 3 cut(s) 64, 404, 565
EarI CTCTTC 3 cut(s) 64, 404, 565
EciI GGCGGA 3 cut(s) 243, 249, 359
Eco130I CCWWGG 1 cut(s) 585
Eco47I GGWCC 3 cut(s) 7, 391, 1104
Eco57I CTGAAG 2 cut(s) 427, 440
Eco72I CACGTG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 395
EcoO109I RGGNCCY 2 cut(s) 391, 1104
EcoRI GAATTC 1 cut(s) 1140
EcoT14I CCWWGG 1 cut(s) 585
EcoT22I ATGCAT 2 cut(s) 742, 871
ErhI CCWWGG 1 cut(s) 585
FalI AAGNNNNNCTT 6 cut(s) 94, 126, 401, 433, 874, 906
FaqI GGGAC 2 cut(s) 377, 844
FauI CCCGC 3 cut(s) 99, 179, 325
FokI GGATG 1 cut(s) 623
FspBI CTAG 3 cut(s) 942, 975, 1025
GlaI GCGC 3 cut(s) 95, 164, 793
GsaI CCCAGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 3 cut(s) 207, 488, 623
HapII CCGG 3 cut(s) 201, 219, 396
HhaI GCGC 3 cut(s) 96, 165, 794
Hin6I GCGC 3 cut(s) 94, 163, 792
HinP1I GCGC 3 cut(s) 94, 163, 792
HindIII AAGCTT 3 cut(s) 103, 888, 1049
HinfI GANTC 2 cut(s) 349, 468
HpaII CCGG 3 cut(s) 201, 219, 396
Hpy188I TCNGA 1 cut(s) 846
Hpy188III TCNNGA 3 cut(s) 502, 731, 1025
HpyAV CCTTC 3 cut(s) 222, 330, 352
HpyCH4III ACNGT 2 cut(s) 667, 819
HpyCH4IV ACGT 3 cut(s) 155, 188, 1018
HpyCH4V TGCA 8 cut(s) 554, 740, 839, 869, 947, 1055, 1064, 1127
HpyF3I CTNAG 3 cut(s) 711, 983, 1058
HpySE526I ACGT 3 cut(s) 155, 188, 1018
HspAI GCGC 3 cut(s) 94, 163, 792
KflI GGGWCCC 1 cut(s) 391
Kzo9I GATC 2 cut(s) 247, 438
LmnI GCTCC 6 cut(s) 179, 475, 562, 589, 664, 809
Lsp1109I GCAGC 3 cut(s) 438, 538, 959
LweI GCATC 2 cut(s) 525, 848
MaeI CTAG 3 cut(s) 942, 975, 1025
MaeII ACGT 3 cut(s) 155, 188, 1018
MaeIII GTNAC 3 cut(s) 156, 266, 859
MalI GATC 2 cut(s) 249, 440
MbiI CCGCTC 3 cut(s) 174, 478, 565
MboI GATC 2 cut(s) 247, 438
MboII GAAGA 9 cut(s) 51, 54, 57, 60, 421, 433, 582, 709, 932
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 5 cut(s) 22, 534, 578, 1065, 1140
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 2 cut(s) 511, 540
Mox20I TGGCCA 1 cut(s) 623
Mph1103I ATGCAT 2 cut(s) 742, 871
MroXI GAANNNNTTC 2 cut(s) 413, 924
MscI TGGCCA 1 cut(s) 623
MseI TTAA 1 cut(s) 881
MslI CAYNNNNRTG 1 cut(s) 255
Msp20I TGGCCA 1 cut(s) 623
MspI CCGG 3 cut(s) 201, 219, 396
MspR9I CCNGG 2 cut(s) 396, 397
MvnI CGCG 2 cut(s) 94, 163
NciI CCSGG 2 cut(s) 396, 397
NdeII GATC 2 cut(s) 247, 438
NlaIV GGNNCC 4 cut(s) 9, 392, 393, 1105
NmuCI GTSAC 2 cut(s) 156, 266
NsiI ATGCAT 2 cut(s) 742, 871
NspV TTCGAA 1 cut(s) 1081
PdmI GAANNNNTTC 2 cut(s) 413, 924
PfeI GAWTC 1 cut(s) 468
PleI GAGTC 1 cut(s) 357
PmaCI CACGTG 1 cut(s) 189
PmlI CACGTG 1 cut(s) 189
PpsI GAGTC 1 cut(s) 357
Ppu21I YACGTR 1 cut(s) 189
PpuMI RGGWCCY 2 cut(s) 391, 1104
Psp5II RGGWCCY 2 cut(s) 391, 1104
PspCI CACGTG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 698
PspN4I GGNNCC 4 cut(s) 9, 392, 393, 1105
PspPI GGNCC 4 cut(s) 7, 206, 391, 1104
PspPPI RGGWCCY 2 cut(s) 391, 1104
PsrI GAACNNNNNNTAC 2 cut(s) 1020, 1052
PstI CTGCAG 1 cut(s) 556
RsaI GTAC 1 cut(s) 853
RsaNI GTAC 1 cut(s) 852
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 881
Sau3AI GATC 2 cut(s) 247, 438
Sau96I GGNCC 4 cut(s) 7, 206, 391, 1104
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 2 cut(s) 396, 397
SfaNI GCATC 2 cut(s) 525, 848
SfcI CTRYAG 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 1081
SinI GGWCC 3 cut(s) 7, 391, 1104
SmaI CCCGGG 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 255
SpeI ACTAGT 1 cut(s) 941
Sse9I AATT 5 cut(s) 22, 534, 578, 1065, 1140
SspI AATATT 1 cut(s) 798
SspMI CTAG 3 cut(s) 942, 975, 1025
StyD4I CCNGG 2 cut(s) 394, 395
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 2 cut(s) 667, 819
TaiI ACGT 3 cut(s) 158, 191, 1021
TaqI TCGA 3 cut(s) 519, 1011, 1081
TasI AATT 5 cut(s) 22, 534, 578, 1065, 1140
TauI GCSGC 7 cut(s) 207, 225, 228, 314, 371, 374, 568
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 1 cut(s) 881
Tru9I TTAA 1 cut(s) 881
TscAI CASTG 2 cut(s) 700, 1062
TseFI GTSAC 2 cut(s) 156, 266
TseI GCWGC 3 cut(s) 451, 551, 947
Tsp45I GTSAC 2 cut(s) 156, 266
TspDTI ATGAA 1 cut(s) 422
TspGWI ACGGA 1 cut(s) 285
TspMI CCCGGG 1 cut(s) 395
TspRI CASTG 2 cut(s) 700, 1062
VpaK11BI GGWCC 3 cut(s) 7, 391, 1104
XapI RAATTY 3 cut(s) 534, 578, 1140
XbaI TCTAGA 1 cut(s) 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XmaI CCCGGG 1 cut(s) 395
XmnI GAANNNNTTC 2 cut(s) 413, 924
XspI CTAG 3 cut(s) 942, 975, 1025
Zsp2I ATGCAT 2 cut(s) 742, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.