RLG00000034800

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002218
Physical Location & Seq
Reverse (-)
54727891 .. 54731948
4058 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034800

Sequence Viewer

Length: 1140 bp
ATGGCAATCGCCTTCTGCTTCACTCCGTCCTCCTCTTCCTCGTCCACCTCCAAGTTCAATCCGCACCGTCCAATTCCGTCGCTCTCGGCCTCTCCCGTCGTGAACCTCCGCCTCAGAGTGTCACCGCCCTCTCTGGTGCACCGCGGCCGCCAGTTCCGGCGCGTGTTGTTCGCCGCGGGGGGCGGAGACGGGGGATTCGGCGGCGGAGGATGCTCCGGAGGAGGCGGCGGAGGGGATCACGGCGGCGAGAGCGGAGGCGAGGACAATGCCGGCGGGAAAAACAAGGTGGAGGCCCTGATGGTGTTGAAGGAGTCCGGGCGGGGGTTGGAGAGCTTGCCGAAGGACTTGGCGGCGGCGATCGAGGACGGGCGGATCCCCGGCGCGGTTGTGGATAAGTATTTTGAGCTGGAGAAGAACGGCTGCTTTTCGTGGCTGCTGCAGTTTGCTGGGTTTAGGGAGCGTTTGTTGGCTGATGATCTTTTCTTGTTTAAGGTCTTCATGGAGTGTGGTGTTGGTCTTTTCACCAAGACTGCTGCAGAGTACCAGAAACGCCAAGAAAACTTTTTCAATGAGCTCGAAGTTGTGTTTGCAGATGTGGTAATGGCCATAATTGCAGATTTCATGCTTGTATATCTTCCTGCCCCAACTGTTTCTCTTCGACCACCAGTTGCACTCAGCGCAGGGGCAATCACCAAGTTTTTCCATGGTTGCCCTGATAATGCATTCCAGATCGCTATCTCAGGAACATCATACTCCTTATTTCAGAGGATTGGTGCAGTAGTGAGAAATGGGAGCAAGCTCTTCGTTGTTGGTACTGCTTCATCACTGGTTGGCACAAGTGTTACAAATGCCTTGATCAATGCAAAGAAGGCTGTTGGTAGCTCCACAGAGGTTGAAGCTGAGAATGTACCTATAGTATCCACTAGCCTTGCATATGGTGTCTATATGGCAGTTTCTAGCAATCTCAGGTACCAAGTATTGGCTGGTGTTATTGAACAAAGGATGTTGGAGCCACTACTACATCAACACAAGCTAATGCTAAGCGCAGTATGCTTTGCCGTTCGAACCGGCAACACATTCTTGGGTTCATTATTGTGGGTGGACTATGCTCGTTTAATTGGGATTCAGAAGGCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

380

Amino Acids

40.33

Weight (kDa)

8.68

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 153 - 330 9.1e-65 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 969
AccB1I GGYRCC 1 cut(s) 969
AccB7I CCANNNNNTGG 1 cut(s) 979
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 4 cut(s) 144, 162, 176, 383
AccIII TCCGGA 1 cut(s) 215
AclWI GGATC 3 cut(s) 243, 367, 380
AcoI YGGCCR 2 cut(s) 145, 603
AfaI GTAC 4 cut(s) 542, 814, 909, 971
AfiI CCNNNNNNNGG 3 cut(s) 321, 382, 979
AgsI TTSAA 5 cut(s) 58, 307, 568, 896, 995
AluBI AGCT 7 cut(s) 333, 406, 574, 799, 882, 899, 1033
AluI AGCT 7 cut(s) 333, 406, 574, 799, 882, 899, 1033
Alw21I GWGCWC 2 cut(s) 141, 576
Alw26I GTCTC 1 cut(s) 180
Alw44I GTGCAC 1 cut(s) 137
AlwI GGATC 3 cut(s) 243, 367, 380
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 5 cut(s) 87, 145, 291, 603, 1131
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 4 cut(s) 420, 433, 436, 533
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp718I GGTACC 1 cut(s) 969
AspLEI GCGC 4 cut(s) 162, 383, 680, 1046
AspS9I GGNCC 2 cut(s) 292, 1132
AsuC2I CCSGG 2 cut(s) 316, 378
AsuHPI GGTGA 3 cut(s) 114, 514, 682
AsuII TTCGAA 1 cut(s) 1063
BaeGI GKGCMC 1 cut(s) 141
BalI TGGCCA 1 cut(s) 605
BamHI GGATCC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 969
BanII GRGCYC 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 487
Bbv12I GWGCWC 2 cut(s) 141, 576
BbvI GCAGC 4 cut(s) 407, 420, 423, 520
BccI CCATC 1 cut(s) 292
BceAI ACGGC 3 cut(s) 256, 433, 1043
BcgI CGANNNNNNTGC 4 cut(s) 248, 282, 784, 818
BciVI GTATCC 1 cut(s) 928
BclI TGATCA 1 cut(s) 855
BcnI CCSGG 2 cut(s) 316, 378
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 2 cut(s) 924, 957
BfmI CTRYAG 3 cut(s) 437, 534, 912
BfuI GTATCC 1 cut(s) 928
BlpI GCTNAGC 1 cut(s) 1040
Bme1390I CCNGG 2 cut(s) 316, 378
BmgT120I GGNCC 2 cut(s) 292, 1132
BmiI GGNNCC 3 cut(s) 374, 971, 1011
BmrFI CCNGG 2 cut(s) 316, 378
BmsI GCATC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 1040
Bpu14I TTCGAA 1 cut(s) 1063
BpuMI CCSGG 2 cut(s) 316, 378
BsaBI GATNNNNATC 1 cut(s) 734
BsaJI CCNNGG 4 cut(s) 142, 174, 376, 703
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 382, 979
Bse118I RCCGGY 2 cut(s) 269, 1067
Bse1I ACTGG 3 cut(s) 151, 665, 831
Bse8I GATNNNNATC 1 cut(s) 734
BseAI TCCGGA 1 cut(s) 215
BseDI CCNNGG 4 cut(s) 142, 174, 376, 703
BseGI GGATG 2 cut(s) 215, 1008
BseJI GATNNNNATC 1 cut(s) 734
BseLI CCNNNNNNNGG 3 cut(s) 321, 382, 979
BseMII CTCAG 5 cut(s) 127, 688, 753, 891, 979
BseNI ACTGG 3 cut(s) 151, 665, 831
BseRI GAGGAG 2 cut(s) 22, 234
BseSI GKGCMC 1 cut(s) 141
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 4 cut(s) 407, 420, 423, 520
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 795
Bsh1236I CGCG 4 cut(s) 144, 162, 176, 383
Bsh1285I CGRYCG 2 cut(s) 148, 360
BshFI GGCC 5 cut(s) 89, 147, 293, 605, 1133
BshNI GGYRCC 1 cut(s) 969
BsiEI CGRYCG 2 cut(s) 148, 360
BsiHKAI GWGCWC 2 cut(s) 141, 576
BsiSI CCGG 6 cut(s) 157, 216, 270, 315, 378, 1068
BslI CCNNNNNNNGG 3 cut(s) 321, 382, 979
BsmAI GTCTC 1 cut(s) 180
BsmBI CGTCTC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 5 cut(s) 89, 147, 293, 605, 1133
Bsp119I TTCGAA 1 cut(s) 1063
Bsp1286I GDGCHC 2 cut(s) 141, 576
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 6 cut(s) 235, 357, 372, 475, 729, 855
Bsp1720I GCTNAGC 1 cut(s) 1040
Bsp19I CCATGG 1 cut(s) 703
BspANI GGCC 5 cut(s) 89, 147, 293, 605, 1133
BspCNI CTCAG 5 cut(s) 126, 687, 752, 892, 978
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 4 cut(s) 144, 162, 176, 383
BspLI GGNNCC 3 cut(s) 374, 971, 1011
BspMAI CTGCAG 2 cut(s) 441, 538
BspPI GGATC 3 cut(s) 243, 367, 380
BspQI GCTCTTC 1 cut(s) 806
BspT104I TTCGAA 1 cut(s) 1063
BspT107I GGYRCC 1 cut(s) 969
BsrBI CCGCTC 1 cut(s) 252
BsrFI RCCGGY 2 cut(s) 269, 1067
BsrI ACTGG 3 cut(s) 151, 665, 831
BssAI RCCGGY 2 cut(s) 269, 1067
BssECI CCNNGG 4 cut(s) 142, 174, 376, 703
BssMI GATC 6 cut(s) 235, 357, 372, 475, 729, 855
BssT1I CCWWGG 1 cut(s) 703
Bst4CI ACNGT 2 cut(s) 68, 649
Bst6I CTCTTC 3 cut(s) 40, 660, 806
BstBI TTCGAA 1 cut(s) 1063
BstC8I GCNNGC 3 cut(s) 271, 335, 797
BstDEI CTNAG 6 cut(s) 113, 674, 739, 900, 965, 1040
BstDSI CCRYGG 3 cut(s) 142, 174, 703
BstF5I GGATG 2 cut(s) 215, 1008
BstFNI CGCG 4 cut(s) 144, 162, 176, 383
BstHHI GCGC 4 cut(s) 162, 383, 680, 1046
BstKTI GATC 6 cut(s) 238, 360, 375, 478, 732, 858
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 6 cut(s) 235, 357, 372, 475, 729, 855
BstMCI CGRYCG 2 cut(s) 148, 360
BstMWI GCNNNNNNNGC 6 cut(s) 210, 249, 611, 677, 869, 1050
BstSCI CCNGG 2 cut(s) 314, 376
BstSFI CTRYAG 3 cut(s) 437, 534, 912
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 4 cut(s) 144, 162, 176, 383
BstV1I GCAGC 4 cut(s) 407, 420, 423, 520
BstV2I GAAGAC 1 cut(s) 487
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BstZI CGGCCG 1 cut(s) 145
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 5 cut(s) 89, 147, 293, 605, 1133
BtgI CCRYGG 3 cut(s) 142, 174, 703
BtsCI GGATG 2 cut(s) 215, 1008
BtsIMutI CAGTG 1 cut(s) 824
Cac8I GCNNGC 3 cut(s) 271, 335, 797
CciNI GCGGCCGC 1 cut(s) 145
CfoI GCGC 4 cut(s) 162, 383, 680, 1046
Cfr10I RCCGGY 2 cut(s) 269, 1067
Cfr13I GGNCC 2 cut(s) 292, 1132
Cfr42I CCGCGG 2 cut(s) 145, 177
Csp6I GTAC 4 cut(s) 541, 813, 908, 970
CspCI CAANNNNNGTGG 4 cut(s) 874, 909, 910, 945
CviAII CATG 3 cut(s) 499, 622, 704
CviQI GTAC 4 cut(s) 541, 813, 908, 970
DdeI CTNAG 6 cut(s) 113, 674, 739, 900, 965, 1040
DpnI GATC 6 cut(s) 237, 359, 374, 477, 731, 857
DpnII GATC 6 cut(s) 235, 357, 372, 475, 729, 855
EaeI YGGCCR 2 cut(s) 145, 603
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 3 cut(s) 40, 660, 806
EarI CTCTTC 3 cut(s) 40, 660, 806
EciI GGCGGA 5 cut(s) 98, 198, 219, 243, 385
Ecl136II GAGCTC 1 cut(s) 574
EclXI CGGCCG 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 576
Eco52I CGGCCG 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 574
EcoICRI GAGCTC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 724
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 3 cut(s) 502, 625, 707
FatI CATG 3 cut(s) 498, 621, 703
FauI CCCGC 3 cut(s) 169, 266, 312
FauNDI CATATG 1 cut(s) 934
FbaI TGATCA 1 cut(s) 855
FokI GGATG 2 cut(s) 222, 1015
FriOI GRGCYC 1 cut(s) 576
FspBI CTAG 2 cut(s) 924, 957
GlaI GCGC 4 cut(s) 161, 382, 679, 1045
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 5 cut(s) 89, 147, 293, 605, 1133
HapII CCGG 6 cut(s) 157, 216, 270, 315, 378, 1068
HhaI GCGC 4 cut(s) 162, 383, 680, 1046
Hin1II CATG 3 cut(s) 502, 625, 707
Hin6I GCGC 4 cut(s) 160, 381, 678, 1044
HinP1I GCGC 4 cut(s) 160, 381, 678, 1044
HinfI GANTC 3 cut(s) 195, 311, 1123
HpaII CCGG 6 cut(s) 157, 216, 270, 315, 378, 1068
HphI GGTGA 3 cut(s) 114, 514, 682
Hpy166II GTNNAC 4 cut(s) 45, 103, 139, 1102
Hpy188I TCNGA 3 cut(s) 116, 765, 1128
Hpy188III TCNNGA 4 cut(s) 100, 216, 727, 741
Hpy8I GTNNAC 4 cut(s) 45, 103, 139, 1102
Hpy99I CGWCG 2 cut(s) 82, 101
HpyAV CCTTC 5 cut(s) 22, 301, 334, 862, 1123
HpyCH4III ACNGT 2 cut(s) 68, 649
HpyF10VI GCNNNNNNNGC 6 cut(s) 210, 249, 611, 677, 869, 1050
HpyF3I CTNAG 6 cut(s) 113, 674, 739, 900, 965, 1040
Hsp92II CATG 3 cut(s) 502, 625, 707
HspAI GCGC 4 cut(s) 160, 381, 678, 1044
Kpn2I TCCGGA 1 cut(s) 215
KpnI GGTACC 1 cut(s) 973
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 855
KspI CCGCGG 2 cut(s) 145, 177
Kzo9I GATC 6 cut(s) 235, 357, 372, 475, 729, 855
LguI GCTCTTC 1 cut(s) 806
LmnI GCTCC 5 cut(s) 218, 457, 792, 887, 1009
Lsp1109I GCAGC 4 cut(s) 407, 420, 423, 520
LweI GCATC 1 cut(s) 200
MaeI CTAG 2 cut(s) 924, 957
MaeIII GTNAC 2 cut(s) 120, 841
MalI GATC 6 cut(s) 237, 359, 374, 477, 731, 857
MbiI CCGCTC 1 cut(s) 252
MboI GATC 6 cut(s) 235, 357, 372, 475, 729, 855
MboII GAAGA 6 cut(s) 27, 424, 487, 626, 647, 793
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 141, 576
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 3 cut(s) 72, 609, 1116
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 306, 987
Mox20I TGGCCA 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 724
MroI TCCGGA 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 269
MscI TGGCCA 1 cut(s) 605
MseI TTAA 2 cut(s) 489, 1115
MslI CAYNNNNRTG 1 cut(s) 1093
Msp20I TGGCCA 1 cut(s) 605
MspA1I CMGCKG 2 cut(s) 144, 176
MspI CCGG 6 cut(s) 157, 216, 270, 315, 378, 1068
MspR9I CCNGG 2 cut(s) 316, 378
Mva1269I GAATGC 1 cut(s) 722
MvnI CGCG 4 cut(s) 144, 162, 176, 383
MwoI GCNNNNNNNGC 6 cut(s) 210, 249, 611, 677, 869, 1050
NaeI GCCGGC 1 cut(s) 271
NciI CCSGG 2 cut(s) 316, 378
NcoI CCATGG 1 cut(s) 703
NdeI CATATG 1 cut(s) 934
NdeII GATC 6 cut(s) 235, 357, 372, 475, 729, 855
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 3 cut(s) 502, 625, 707
NlaIV GGNNCC 3 cut(s) 374, 971, 1011
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 120
NotI GCGGCCGC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 724
NspV TTCGAA 1 cut(s) 1063
PciSI GCTCTTC 1 cut(s) 806
PctI GAATGC 1 cut(s) 722
PdiI GCCGGC 1 cut(s) 271
PfeI GAWTC 2 cut(s) 195, 1123
PflMI CCANNNNNTGG 1 cut(s) 979
Ple19I CGATCG 1 cut(s) 360
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 446
PspN4I GGNNCC 3 cut(s) 374, 971, 1011
PspPI GGNCC 2 cut(s) 292, 1132
PstI CTGCAG 2 cut(s) 441, 538
PsuI RGATCY 1 cut(s) 372
PvuI CGATCG 1 cut(s) 360
RsaI GTAC 4 cut(s) 542, 814, 909, 971
RsaNI GTAC 4 cut(s) 541, 813, 908, 970
RseI CAYNNNNRTG 1 cut(s) 1093
SacI GAGCTC 1 cut(s) 576
SacII CCGCGG 2 cut(s) 145, 177
SapI GCTCTTC 1 cut(s) 806
SaqAI TTAA 2 cut(s) 489, 1115
Sau3AI GATC 6 cut(s) 235, 357, 372, 475, 729, 855
Sau96I GGNCC 2 cut(s) 292, 1132
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 2 cut(s) 316, 378
SduI GDGCHC 2 cut(s) 141, 576
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 3 cut(s) 437, 534, 912
Sfr303I CCGCGG 2 cut(s) 145, 177
SfuI TTCGAA 1 cut(s) 1063
SgrBI CCGCGG 2 cut(s) 145, 177
SmiMI CAYNNNNRTG 1 cut(s) 1093
Sse9I AATT 3 cut(s) 72, 609, 1116
SspMI CTAG 2 cut(s) 924, 957
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 314, 376
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 2 cut(s) 68, 649
TaqI TCGA 4 cut(s) 360, 576, 658, 1063
TasI AATT 3 cut(s) 72, 609, 1116
TauI GCSGC 8 cut(s) 147, 150, 176, 204, 228, 246, 353, 356
TfiI GAWTC 2 cut(s) 195, 1123
Tru1I TTAA 2 cut(s) 489, 1115
Tru9I TTAA 2 cut(s) 489, 1115
TscAI CASTG 1 cut(s) 831
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 4 cut(s) 420, 433, 436, 533
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 4 cut(s) 487, 610, 810, 1077
TspGWI ACGGA 2 cut(s) 15, 66
TspRI CASTG 1 cut(s) 831
Van91I CCANNNNNTGG 1 cut(s) 979
VneI GTGCAC 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 980
XspI CTAG 2 cut(s) 924, 957
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.