pycom03g12990

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0002218
Physical Location & Seq
Reverse (-)
13902481 .. 13906207
3727 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g12990.3

Sequence Viewer

Length: 1158 bp
ATGGCGATCGCCTTCTGCTTCCTTCCCTCCTCCGCCGCCGCCGCCTCCTCTTCCTCCCTCACCAAACTCAACCCTCACCGCCCATCTCTCTCCGCCTCCGCCTCCTCGCCCCTCCTCCACCTCCGCCTCACCGCCAACCCTCCCTCCCTCACCCACCGCCACCGCCAGTTCCGCCGCATCCTTTTCTCCGCCGGCGGCGACGACGGGGGGATTAATGGACGTGATTCCTCGGGAGGCGGTGGCGGCGGCGGAGATGAAGGTGACAGCGACGGAGGGTCCGACAATGCAGGCGGAAAGAACAGGGGTGAGGCGTTGATGGTGTTGGCGGAGTCTAAGCGGGGGTTGGAGAGCTTGCCCAAGGACTTGGCGGCTGCGATCCAGGCGGGTCGGATTCCCGGGTCGGTTGTGGGACGGTACTTTGAGCTGGAGAAGTCGGGTCTGTTCAGGTGGCTGATGCAATTCGCTGGGTTTAGAGAGAGGTTGCTGGCTGATGATCTTTTTTTTGCTAAGGTTTTCATGGAATGCGGCGTTGGTCTCTTCACTAAGACTGCTGCAGAGTACGAGCGGCGGAGAGAGAACTTTTTCAATGAGCTGGAAGTTGTTTTTGCAGATGTGGTAATGGCCATAATTGCAGATTTCATGCTTGTTTATCTTCCTGCCCCAACCGTTTCTCTTCGACCTCCACTTGGCGTCAATGCAGGAGCAATCACTAGGTTTTTCCATGGCTGCCCCGAAAATGCCTTCCAGATCGCCATGTCGGGAACATCATACTCATTATTACAGAGGATTGGTGGAGTAGTGAGAAATGGGGCCAAGCTCTTTGCTGTTGGTACTGCTTCATCCCTGGTTGGCACAGCTGTGACAAATGCCTTGATCAACCCAAGGAAGGCTGTTGATAAGGACAAAGCCGGTGAACTTGAGAATGTGCCGATATTATCCACTAGCGTTGCATATGGTGTCTACATGGCAGTTTCTAGCAATCTCAGGTACCAAGTATTGGCTGGTGTTATTGAACAAAGGTGTTTGGAACCGCTACTACATCAAAACAAGCTCATGCTAAGCGCAATTTGCTTTGCCATTCGGACTGGAAACACATTCTTGGGTTCATTATTGTGGGTGGACTATGCTCGTTTAATAGGAATCCAGAAGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

386

Amino Acids

41.15

Weight (kDa)

9.08

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 987
AccB1I GGYRCC 1 cut(s) 987
AccB7I CCANNNNNTGG 1 cut(s) 997
AccBSI CCGCTC 1 cut(s) 565
AccI GTMKAC 1 cut(s) 960
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 690
AfaI GTAC 4 cut(s) 416, 560, 832, 989
AfiI CCNNNNNNNGG 3 cut(s) 686, 886, 997
AgsI TTSAA 2 cut(s) 586, 1013
AhdI GACNNNNNGTC 1 cut(s) 274
AjiI CACGTC 1 cut(s) 221
AjnI CCWGG 2 cut(s) 378, 843
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AleI CACNNNNGTG 1 cut(s) 857
AluBI AGCT 6 cut(s) 351, 424, 592, 817, 857, 1051
AluI AGCT 6 cut(s) 351, 424, 592, 817, 857, 1051
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 1 cut(s) 370
Ama87I CYCGRG 2 cut(s) 229, 395
AoxI GGCC 2 cut(s) 621, 810
ApeKI GCWGC 3 cut(s) 371, 551, 726
AseI ATTAAT 1 cut(s) 213
AsiSI GCGATCGC 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 581
Asp718I GGTACC 1 cut(s) 987
AspLEI GCGC 1 cut(s) 1064
AspS9I GGNCC 2 cut(s) 276, 810
AsuC2I CCSGG 2 cut(s) 396, 397
AsuHPI GGTGA 7 cut(s) 52, 68, 121, 142, 272, 317, 923
AvaI CYCGRG 2 cut(s) 229, 395
AvaII GGWCC 1 cut(s) 276
BalI TGGCCA 1 cut(s) 623
BanI GGYRCC 1 cut(s) 987
BbvI GCAGC 3 cut(s) 358, 538, 713
BccI CCATC 2 cut(s) 91, 310
BciT130I CCWGG 2 cut(s) 380, 845
BclI TGATCA 1 cut(s) 873
BcnI CCSGG 2 cut(s) 396, 397
BcoDI GTCTC 1 cut(s) 539
BfaI CTAG 3 cut(s) 711, 942, 975
BfmI CTRYAG 1 cut(s) 552
BlpI GCTNAGC 1 cut(s) 1058
Bme1390I CCNGG 4 cut(s) 380, 396, 397, 845
Bme18I GGWCC 1 cut(s) 276
BmeRI GACNNNNNGTC 1 cut(s) 274
BmeT110I CYCGRG 2 cut(s) 229, 395
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 276, 810
BmiI GGNNCC 4 cut(s) 277, 811, 989, 1029
BmrFI CCNGG 4 cut(s) 380, 396, 397, 845
BmsI GCATC 2 cut(s) 186, 444
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 1058
BpuEI CTTGAG 1 cut(s) 938
BpuMI CCSGG 2 cut(s) 396, 397
BsaHI GRCGYC 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 6 cut(s) 228, 357, 395, 721, 843, 881
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 686, 886, 997
Bse118I RCCGGY 2 cut(s) 191, 908
Bse1I ACTGG 2 cut(s) 166, 1090
BseBI CCWGG 2 cut(s) 380, 845
BseDI CCNNGG 6 cut(s) 228, 357, 395, 721, 843, 881
BseGI GGATG 2 cut(s) 177, 839
BseLI CCNNNNNNNGG 3 cut(s) 686, 886, 997
BseMII CTCAG 1 cut(s) 997
BseNI ACTGG 2 cut(s) 166, 1090
BseRI GAGGAG 4 cut(s) 19, 37, 94, 104
BseXI GCAGC 3 cut(s) 358, 538, 713
BseYI CCCAGC 1 cut(s) 464
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 623, 812
BshNI GGYRCC 1 cut(s) 987
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 2 cut(s) 229, 395
BsiSI CCGG 3 cut(s) 192, 396, 909
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 686, 886, 997
BsmAI GTCTC 1 cut(s) 539
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 2 cut(s) 623, 812
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 2 cut(s) 229, 395
Bsp143I GATC 5 cut(s) 6, 375, 493, 747, 873
Bsp1720I GCTNAGC 1 cut(s) 1058
Bsp19I CCATGG 1 cut(s) 721
BspANI GGCC 2 cut(s) 623, 812
BspCNI CTCAG 1 cut(s) 996
BspLI GGNNCC 4 cut(s) 277, 811, 989, 1029
BspMAI CTGCAG 1 cut(s) 556
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 987
BspTNI GGTCTC 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 565
BsrFI RCCGGY 2 cut(s) 191, 908
BsrI ACTGG 2 cut(s) 166, 1090
BssAI RCCGGY 2 cut(s) 191, 908
BssECI CCNNGG 6 cut(s) 228, 357, 395, 721, 843, 881
BssMI GATC 5 cut(s) 6, 375, 493, 747, 873
BssNI GRCGYC 1 cut(s) 690
BssT1I CCWWGG 3 cut(s) 357, 721, 881
Bst2UI CCWGG 2 cut(s) 380, 845
Bst4CI ACNGT 2 cut(s) 414, 667
Bst6I CTCTTC 3 cut(s) 55, 542, 678
BstACI GRCGYC 1 cut(s) 690
BstC8I GCNNGC 4 cut(s) 193, 289, 353, 486
BstDEI CTNAG 5 cut(s) 333, 507, 543, 983, 1058
BstDSI CCRYGG 1 cut(s) 721
BstF5I GGATG 2 cut(s) 177, 839
BstHHI GCGC 1 cut(s) 1064
BstKTI GATC 5 cut(s) 9, 378, 496, 750, 876
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 5 cut(s) 6, 375, 493, 747, 873
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 6 cut(s) 41, 171, 243, 380, 629, 1068
BstNI CCWGG 2 cut(s) 380, 845
BstSCI CCNGG 4 cut(s) 378, 394, 395, 843
BstSFI CTRYAG 1 cut(s) 552
BstV1I GCAGC 3 cut(s) 358, 538, 713
BstXI CCANNNNNNTGG 1 cut(s) 364
BsuRI GGCC 2 cut(s) 623, 812
BtgI CCRYGG 1 cut(s) 721
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 177, 839
Cac8I GCNNGC 4 cut(s) 193, 289, 353, 486
CfoI GCGC 1 cut(s) 1064
Cfr10I RCCGGY 2 cut(s) 191, 908
Cfr13I GGNCC 2 cut(s) 276, 810
Cfr9I CCCGGG 1 cut(s) 395
CseI GACGC 1 cut(s) 679
Csp6I GTAC 4 cut(s) 415, 559, 831, 988
CspCI CAANNNNNGTGG 2 cut(s) 928, 963
CviAII CATG 6 cut(s) 517, 640, 722, 754, 964, 1054
CviQI GTAC 4 cut(s) 415, 559, 831, 988
DdeI CTNAG 5 cut(s) 333, 507, 543, 983, 1058
DpnI GATC 5 cut(s) 8, 377, 495, 749, 875
DpnII GATC 5 cut(s) 6, 375, 493, 747, 873
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 3 cut(s) 55, 542, 678
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 3 cut(s) 55, 542, 678
Eco130I CCWWGG 3 cut(s) 357, 721, 881
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 276
Eco88I CYCGRG 2 cut(s) 229, 395
EcoRII CCWGG 2 cut(s) 378, 843
EcoT14I CCWWGG 3 cut(s) 357, 721, 881
ErhI CCWWGG 3 cut(s) 357, 721, 881
FaeI CATG 6 cut(s) 520, 643, 725, 757, 967, 1057
FaqI GGGAC 1 cut(s) 423
FatI CATG 6 cut(s) 516, 639, 721, 753, 963, 1053
FauI CCCGC 2 cut(s) 330, 376
FauNDI CATATG 1 cut(s) 952
FbaI TGATCA 1 cut(s) 873
FblI GTMKAC 1 cut(s) 960
FokI GGATG 2 cut(s) 164, 826
FspBI CTAG 3 cut(s) 711, 942, 975
GlaI GCGC 1 cut(s) 1063
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 2 cut(s) 623, 812
HapII CCGG 3 cut(s) 192, 396, 909
HgaI GACGC 1 cut(s) 679
HhaI GCGC 1 cut(s) 1064
Hin1I GRCGYC 1 cut(s) 690
Hin1II CATG 6 cut(s) 520, 643, 725, 757, 967, 1057
Hin6I GCGC 1 cut(s) 1062
HinP1I GCGC 1 cut(s) 1062
HinfI GANTC 4 cut(s) 224, 329, 391, 1140
HpaII CCGG 3 cut(s) 192, 396, 909
HphI GGTGA 7 cut(s) 52, 68, 121, 142, 272, 317, 923
Hpy166II GTNNAC 3 cut(s) 914, 961, 1120
Hpy188I TCNGA 3 cut(s) 280, 390, 1083
Hpy188III TCNNGA 4 cut(s) 231, 745, 759, 1144
Hpy8I GTNNAC 3 cut(s) 914, 961, 1120
Hpy99I CGWCG 3 cut(s) 203, 206, 272
HpyAV CCTTC 6 cut(s) 22, 32, 251, 751, 880, 1141
HpyCH4III ACNGT 2 cut(s) 414, 667
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 7 cut(s) 287, 457, 554, 608, 632, 698, 950
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 171, 243, 380, 629, 1068
HpyF3I CTNAG 5 cut(s) 333, 507, 543, 983, 1058
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 690
Hsp92II CATG 6 cut(s) 520, 643, 725, 757, 967, 1057
HspAI GCGC 1 cut(s) 1062
KpnI GGTACC 1 cut(s) 991
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 873
Kzo9I GATC 5 cut(s) 6, 375, 493, 747, 873
LmnI GCTCC 1 cut(s) 701
Lsp1109I GCAGC 3 cut(s) 358, 538, 713
LweI GCATC 2 cut(s) 186, 444
MaeI CTAG 3 cut(s) 711, 942, 975
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 260, 859
MalI GATC 5 cut(s) 8, 377, 495, 749, 875
MbiI CCGCTC 1 cut(s) 565
MboI GATC 5 cut(s) 6, 375, 493, 747, 873
MboII GAAGA 4 cut(s) 42, 529, 644, 665
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 3 cut(s) 458, 627, 1065
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 3 cut(s) 303, 324, 368
Mox20I TGGCCA 1 cut(s) 623
MreI CGCCGGCG 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 581
MscI TGGCCA 1 cut(s) 623
MseI TTAA 2 cut(s) 213, 1133
MslI CAYNNNNRTG 2 cut(s) 857, 1111
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 857
MspI CCGG 3 cut(s) 192, 396, 909
MspR9I CCNGG 4 cut(s) 380, 396, 397, 845
Mva1269I GAATGC 1 cut(s) 527
MvaI CCWGG 2 cut(s) 380, 845
MwoI GCNNNNNNNGC 6 cut(s) 41, 171, 243, 380, 629, 1068
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 2 cut(s) 396, 397
NcoI CCATGG 1 cut(s) 721
NdeI CATATG 1 cut(s) 952
NdeII GATC 5 cut(s) 6, 375, 493, 747, 873
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 6 cut(s) 520, 643, 725, 757, 967, 1057
NlaIV GGNNCC 4 cut(s) 277, 811, 989, 1029
NmuCI GTSAC 2 cut(s) 260, 859
OliI CACNNNNGTG 1 cut(s) 857
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 1 cut(s) 527
PdiI GCCGGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 3 cut(s) 224, 391, 1140
PflMI CCANNNNNTGG 1 cut(s) 997
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PshBI ATTAAT 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 378, 843
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 2 cut(s) 378, 843
PspN4I GGNNCC 4 cut(s) 277, 811, 989, 1029
PspPI GGNCC 2 cut(s) 276, 810
PsrI GAACNNNNNNTAC 2 cut(s) 1020, 1052
PstI CTGCAG 1 cut(s) 556
PvuI CGATCG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 857
RgaI GCGATCGC 1 cut(s) 9
RsaI GTAC 4 cut(s) 416, 560, 832, 989
RsaNI GTAC 4 cut(s) 415, 559, 831, 988
RseI CAYNNNNRTG 2 cut(s) 857, 1111
SaqAI TTAA 2 cut(s) 213, 1133
Sau3AI GATC 5 cut(s) 6, 375, 493, 747, 873
Sau96I GGNCC 2 cut(s) 276, 810
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 4 cut(s) 380, 396, 397, 845
SfaAI GCGATCGC 1 cut(s) 9
SfaNI GCATC 2 cut(s) 186, 444
SfcI CTRYAG 1 cut(s) 552
SgfI GCGATCGC 1 cut(s) 9
SgrAI CRCCGGYG 1 cut(s) 191
SinI GGWCC 1 cut(s) 276
SmaI CCCGGG 1 cut(s) 397
SmiMI CAYNNNNRTG 2 cut(s) 857, 1111
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 3 cut(s) 458, 627, 1065
SspMI CTAG 3 cut(s) 711, 942, 975
StyD4I CCNGG 4 cut(s) 378, 394, 395, 843
StyI CCWWGG 3 cut(s) 357, 721, 881
TaaI ACNGT 2 cut(s) 414, 667
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 676
TasI AATT 3 cut(s) 458, 627, 1065
TfiI GAWTC 3 cut(s) 224, 391, 1140
Tru1I TTAA 2 cut(s) 213, 1133
Tru9I TTAA 2 cut(s) 213, 1133
TseFI GTSAC 2 cut(s) 260, 859
TseI GCWGC 3 cut(s) 371, 551, 726
Tsp45I GTSAC 2 cut(s) 260, 859
TspDTI ATGAA 5 cut(s) 270, 505, 628, 828, 1095
TspGWI ACGGA 1 cut(s) 285
TspMI CCCGGG 1 cut(s) 395
Van91I CCANNNNNTGG 1 cut(s) 997
VpaK11BI GGWCC 1 cut(s) 276
VspI ATTAAT 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XmaI CCCGGG 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 960
XmnI GAANNNNTTC 1 cut(s) 581
XspI CTAG 3 cut(s) 711, 942, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.