RchiOBHm_Chr1g0317941

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002218
Physical Location & Seq
Forward (+)
5474851 .. 5478670
3820 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54823

Sequence Viewer

Length: 1137 bp
ATGGCGGTCGCCACCTTGTCCAACTTCTCCGCTTTCACCACTCGCACACCCTCTCTCTCTTATTTTTCTTCTTCTTCTTCACCTTTCCCGCGCACCACAAACTTCACTTTCACTACCCTCACCAAACCTCCCACCTCCCTCTCTCTCGCCACGTCACCGAGCCTCCCCCGCTCCTCTTTCGCCACGTGTTTCTCCTCCGGCGGCCCACCTTCCTCCGGCGGCGGCGGGGGAGGAGATCACGGAAATGGCGGCGGTGACGGAGAGGGAGGGGAGGACAGAGAGAGGAACAAAAAGGAGGCGGCGATGGCGATTGCGGAGGCGGGAAGGACGGCGGAGAGTCTGCCGAAGGACTTGGCGGCGGCGGTGGAGGCGGGTCGGGTCCCCGGGTTGATTGTGAAGAGGTTCTTTGAGCTGGAGAAGTCGGTGGTCTTCAGGTGGCTGCTTCAGTTTGATGGATTCAAGGAGCGGTTGCTGGCCGACGACTTGTTCTTGACCAAAGTTGGCATCGAGTGCGGTGTTGGAATTTTCACCAAGACTGCTGCAGAGTTGGAGCGGCGCAGAGAAAAATTTACCAAGGAGCTGGATTTTGTGTTTGCGGATGTGGTGATGGCCATTATAGCTGATTTTATGCTTGTCTGGCTTCCTGCTCCTACTGTTTCACTTCGCAAACCTCTTGTTGTCAGTGCTGGGCGTGTTGCTAAGTTCTTCTATGGCTGTCCTGACAATGCATTTCAGGTTGCTTTGGCTGGAACATCTTACTCAGTCTTACAGAGAATAGGCGCAATATTAAGAAATGGAGCAAAACTATTCGTGGTTGGGACTGGTGCTTCTCTGATTGGTACTGGTGTAACAAATGCATTGATTGCTGCAAGAAAAGCTTTGGACAAATCCTTTCTTGGTGAAGCAGAAGATGTTCCCATATTATCAACTAGTGCAGCCTATGGGGTCTATATGGCAGTTTCTAGCAATCTAAGGTACCAAGTTCTCGCTGGAATAATCGAACAACGTATTCTAGAACCCTTGCTACACCAACACAAGCTTGCACTGAGTGCAATTTGCTTTGCTGTTCGAACTGGAAACACATTTTTGGGGTCCTTGATGTGGGTTGATTATGCACGCTGGATTGGAATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

378

Amino Acids

40.39

Weight (kDa)

9.11

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 155 - 332 5.2e-66 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 975
AccB1I GGYRCC 1 cut(s) 975
AccBSI CCGCTC 3 cut(s) 171, 466, 553
AccII CGCG 1 cut(s) 91
AcoI YGGCCR 2 cut(s) 474, 609
AcsI RAATTY 3 cut(s) 522, 566, 1128
AcuI CTGAAG 2 cut(s) 415, 428
AcvI CACGTG 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 1049
AfaI GTAC 2 cut(s) 841, 977
AfiI CCNNNNNNNGG 2 cut(s) 215, 1101
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 2 cut(s) 460, 1133
AhlI ACTAGT 1 cut(s) 929
AjiI CACGTC 1 cut(s) 153
AluBI AGCT 5 cut(s) 412, 580, 620, 878, 1039
AluI AGCT 5 cut(s) 412, 580, 620, 878, 1039
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 3 cut(s) 202, 474, 609
ApeKI GCWGC 4 cut(s) 439, 539, 866, 935
ApoI RAATTY 3 cut(s) 522, 566, 1128
Asp700I GAANNNNTTC 2 cut(s) 401, 912
Asp718I GGTACC 1 cut(s) 975
AspLEI GCGC 3 cut(s) 93, 558, 782
AspS9I GGNCC 3 cut(s) 203, 379, 1092
AsuC2I CCSGG 2 cut(s) 384, 385
AsuHPI GGTGA 8 cut(s) 28, 72, 112, 147, 266, 520, 616, 911
AsuII TTCGAA 1 cut(s) 1069
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 2 cut(s) 379, 1092
BaeI ACNNNNGTAYC 2 cut(s) 831, 864
BalI TGGCCA 1 cut(s) 611
BanI GGYRCC 1 cut(s) 975
BbrPI CACGTG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 421
BbvI GCAGC 4 cut(s) 426, 526, 853, 947
BccI CCATC 3 cut(s) 298, 446, 601
BceAI ACGGC 1 cut(s) 345
BcnI CCSGG 2 cut(s) 384, 385
BcuI ACTAGT 1 cut(s) 929
BfaI CTAG 3 cut(s) 930, 963, 1013
BfmI CTRYAG 1 cut(s) 540
Bme1390I CCNGG 2 cut(s) 384, 385
Bme18I GGWCC 2 cut(s) 379, 1092
BmeT110I CYCGRG 1 cut(s) 383
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 203, 379, 1092
BmiI GGNNCC 4 cut(s) 380, 381, 977, 1093
BmrFI CCNGG 2 cut(s) 384, 385
BmsI GCATC 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 1069
BpuMI CCSGG 2 cut(s) 384, 385
BsaAI YACGTR 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 382, 383, 573
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 1101
Bse1I ACTGG 3 cut(s) 826, 847, 1078
BseDI CCNNGG 3 cut(s) 382, 383, 573
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 2 cut(s) 215, 1101
BseMII CTCAG 2 cut(s) 774, 1037
BseNI ACTGG 3 cut(s) 826, 847, 1078
BseRI GAGGAG 3 cut(s) 163, 184, 246
BseXI GCAGC 4 cut(s) 426, 526, 853, 947
BseYI CCCAGC 1 cut(s) 686
BsgI GTGCAG 1 cut(s) 954
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 204, 476, 611
BshNI GGYRCC 1 cut(s) 975
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 3 cut(s) 198, 216, 384
BslFI GGGAC 2 cut(s) 365, 832
BslI CCNNNNNNNGG 2 cut(s) 215, 1101
BsmFI GGGAC 2 cut(s) 365, 832
BsnI GGCC 3 cut(s) 204, 476, 611
BsoBI CYCGRG 1 cut(s) 383
Bsp119I TTCGAA 1 cut(s) 1069
Bsp143I GATC 1 cut(s) 235
BspANI GGCC 3 cut(s) 204, 476, 611
BspCNI CTCAG 2 cut(s) 773, 1038
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 4 cut(s) 380, 381, 977, 1093
BspMAI CTGCAG 1 cut(s) 544
BspT104I TTCGAA 1 cut(s) 1069
BspT107I GGYRCC 1 cut(s) 975
BsrBI CCGCTC 3 cut(s) 171, 466, 553
BsrI ACTGG 3 cut(s) 826, 847, 1078
BssECI CCNNGG 3 cut(s) 382, 383, 573
BssMI GATC 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 573
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 1 cut(s) 392
BstAPI GCANNNNNTGC 3 cut(s) 510, 863, 1049
BstBAI YACGTR 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 1069
BstC8I GCNNGC 3 cut(s) 474, 1041, 1117
BstDEI CTNAG 4 cut(s) 699, 760, 971, 1046
BstF5I GGATG 1 cut(s) 604
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 3 cut(s) 93, 558, 782
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 9 cut(s) 168, 305, 368, 510, 617, 637, 863, 875, 1049
BstSCI CCNGG 2 cut(s) 382, 383
BstSFI CTRYAG 1 cut(s) 540
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 4 cut(s) 426, 526, 853, 947
BstV2I GAAGAC 1 cut(s) 421
BstXI CCANNNNNNTGG 1 cut(s) 580
BsuRI GGCC 3 cut(s) 204, 476, 611
BtgZI GCGATG 1 cut(s) 317
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 688, 1043
Cac8I GCNNGC 3 cut(s) 474, 1041, 1117
CfoI GCGC 3 cut(s) 93, 558, 782
Cfr13I GGNCC 3 cut(s) 203, 379, 1092
Cfr9I CCCGGG 1 cut(s) 383
Csp6I GTAC 2 cut(s) 840, 976
CviQI GTAC 2 cut(s) 840, 976
DdeI CTNAG 4 cut(s) 699, 760, 971, 1046
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
DraIII CACNNNGTG 1 cut(s) 1049
EaeI YGGCCR 2 cut(s) 474, 609
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
EciI GGCGGA 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 573
Eco47I GGWCC 2 cut(s) 379, 1092
Eco57I CTGAAG 2 cut(s) 415, 428
Eco72I CACGTG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 383
EcoO109I RGGNCCY 2 cut(s) 379, 1092
EcoRI GAATTC 1 cut(s) 1128
EcoT14I CCWWGG 1 cut(s) 573
EcoT22I ATGCAT 2 cut(s) 730, 859
ErhI CCWWGG 1 cut(s) 573
FaiI YATR 8 cut(s) 617, 629, 711, 920, 942, 951, 953, 1113
FalI AAGNNNNNCTT 4 cut(s) 389, 421, 862, 894
FaqI GGGAC 2 cut(s) 365, 832
FauI CCCGC 5 cut(s) 96, 176, 218, 313, 364
FokI GGATG 1 cut(s) 611
FspBI CTAG 3 cut(s) 930, 963, 1013
GlaI GCGC 3 cut(s) 92, 557, 781
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 3 cut(s) 204, 476, 611
HapII CCGG 3 cut(s) 198, 216, 384
HhaI GCGC 3 cut(s) 93, 558, 782
Hin6I GCGC 3 cut(s) 91, 556, 780
HinP1I GCGC 3 cut(s) 91, 556, 780
HindIII AAGCTT 2 cut(s) 876, 1037
HinfI GANTC 2 cut(s) 337, 456
HpaII CCGG 3 cut(s) 198, 216, 384
HphI GGTGA 8 cut(s) 28, 72, 112, 147, 266, 520, 616, 911
Hpy188I TCNGA 1 cut(s) 834
Hpy188III TCNNGA 3 cut(s) 490, 719, 1013
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 3 cut(s) 219, 318, 340
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 3 cut(s) 152, 185, 1006
HpyCH4V TGCA 8 cut(s) 542, 728, 857, 869, 935, 1043, 1052, 1115
HpyF10VI GCNNNNNNNGC 9 cut(s) 168, 305, 368, 510, 617, 637, 863, 875, 1049
HpyF3I CTNAG 4 cut(s) 699, 760, 971, 1046
HpySE526I ACGT 3 cut(s) 152, 185, 1006
HspAI GCGC 3 cut(s) 91, 556, 780
KflI GGGWCCC 1 cut(s) 379
KpnI GGTACC 1 cut(s) 979
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 6 cut(s) 176, 463, 550, 577, 652, 797
Lsp1109I GCAGC 4 cut(s) 426, 526, 853, 947
LweI GCATC 1 cut(s) 513
MaeI CTAG 3 cut(s) 930, 963, 1013
MaeII ACGT 3 cut(s) 152, 185, 1006
MaeIII GTNAC 3 cut(s) 153, 254, 847
MalI GATC 1 cut(s) 237
MbiI CCGCTC 3 cut(s) 171, 466, 553
MboI GATC 1 cut(s) 235
MboII GAAGA 8 cut(s) 60, 63, 66, 69, 409, 421, 697, 920
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 4 cut(s) 522, 566, 1053, 1128
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 3 cut(s) 45, 499, 528
Mox20I TGGCCA 1 cut(s) 611
Mph1103I ATGCAT 2 cut(s) 730, 859
MroXI GAANNNNTTC 2 cut(s) 401, 912
MscI TGGCCA 1 cut(s) 611
MseI TTAA 1 cut(s) 788
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 611
MspI CCGG 3 cut(s) 198, 216, 384
MspR9I CCNGG 2 cut(s) 384, 385
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 9 cut(s) 168, 305, 368, 510, 617, 637, 863, 875, 1049
NciI CCSGG 2 cut(s) 384, 385
NdeII GATC 1 cut(s) 235
NlaIV GGNNCC 4 cut(s) 380, 381, 977, 1093
NmuCI GTSAC 2 cut(s) 153, 254
NsiI ATGCAT 2 cut(s) 730, 859
NspV TTCGAA 1 cut(s) 1069
PdmI GAANNNNTTC 2 cut(s) 401, 912
PfeI GAWTC 1 cut(s) 456
PleI GAGTC 1 cut(s) 345
PmaCI CACGTG 1 cut(s) 186
PmlI CACGTG 1 cut(s) 186
PpsI GAGTC 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 186
PpuMI RGGWCCY 2 cut(s) 379, 1092
Psp5II RGGWCCY 2 cut(s) 379, 1092
PspCI CACGTG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 686
PspN4I GGNNCC 4 cut(s) 380, 381, 977, 1093
PspPI GGNCC 3 cut(s) 203, 379, 1092
PspPPI RGGWCCY 2 cut(s) 379, 1092
PsrI GAACNNNNNNTAC 2 cut(s) 1008, 1040
PstI CTGCAG 1 cut(s) 544
RsaI GTAC 2 cut(s) 841, 977
RsaNI GTAC 2 cut(s) 840, 976
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 788
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 3 cut(s) 203, 379, 1092
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 384, 385
SfaNI GCATC 1 cut(s) 513
SfcI CTRYAG 1 cut(s) 540
SfuI TTCGAA 1 cut(s) 1069
SinI GGWCC 2 cut(s) 379, 1092
SmaI CCCGGG 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 243
SpeI ACTAGT 1 cut(s) 929
Sse9I AATT 4 cut(s) 522, 566, 1053, 1128
SspI AATATT 1 cut(s) 786
SspMI CTAG 3 cut(s) 930, 963, 1013
StyD4I CCNGG 2 cut(s) 382, 383
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 3 cut(s) 155, 188, 1009
TaqI TCGA 3 cut(s) 507, 999, 1069
TasI AATT 4 cut(s) 522, 566, 1053, 1128
TauI GCSGC 8 cut(s) 204, 222, 225, 252, 302, 359, 362, 556
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 1 cut(s) 788
Tru9I TTAA 1 cut(s) 788
TscAI CASTG 2 cut(s) 688, 1050
TseFI GTSAC 2 cut(s) 153, 254
TseI GCWGC 4 cut(s) 439, 539, 866, 935
Tsp45I GTSAC 2 cut(s) 153, 254
TspGWI ACGGA 2 cut(s) 255, 273
TspMI CCCGGG 1 cut(s) 383
TspRI CASTG 2 cut(s) 688, 1050
VpaK11BI GGWCC 2 cut(s) 379, 1092
XapI RAATTY 3 cut(s) 522, 566, 1128
XbaI TCTAGA 1 cut(s) 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 986
XmaI CCCGGG 1 cut(s) 383
XmnI GAANNNNTTC 2 cut(s) 401, 912
XspI CTAG 3 cut(s) 930, 963, 1013
Zsp2I ATGCAT 2 cut(s) 730, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.