RchiOBHm_Chr5g0052771

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002218
Physical Location & Seq
Forward (+)
54855921 .. 54860597
4677 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33014

Sequence Viewer

Length: 1131 bp
ATGGCAATCGCCTTCTGCTTCACTCCCTCCTCCTCCTCTTCCTCCTCCGCCTCCAAGTTCAATCCGCACCGTCCGTTTCCGTCCCTCTCCGCCTCTCCCGTCGTGCACCTCCGCCTCAGAGTGTCCCCGCCCTCTCTGGCGCACCGCGGCCGCCAGTTCCGGCGCGTGCTGTTCGCCGCCGGGGGCGGAGACGGGGGATTTGGCGGCGGAGGACACTCCGGAGGCGGTAGCGGCGGGGATCACGGCGGCGAGGACAATGCCGGCGGGAAAAACAAGTTGGAGGCCCTGATGGTGTTGAAGGAGTCCGGGCGGGGGTTGGAGAGCCTGCCGAAGGACTTGGCGGCGGCGATCGAGGACGGGCGGATCCCCGGCGCGGTTGTGGATAAGTATTTTGAGCTGGAGAAGAACGGCTGCTTTTCGTGGCTGCTGCAGTTTGCTGGGTTTAGGGAGCGGTTGTTGGCTGATGATCTTTTCTTGTTTAAGGTCTTCATGGAGTGTGGTGTTGGTCTTTTCACCAAGACTGCTGCAGAGTACCAGAAACGCCAAGAAAACTTTTTCAATGAGCTCGAAGTTGTGTTTGCAGATGTGGTAATGGCCATAATTGCAGATTTCATGCTTGTATATCTTCCTGCCCCAACTGTTTCTCTTCGACCACCAGTTGCACTCAGCGCAGGGGCAATCACCAAGTTTTTGCATGGTTGCCCTGATAATGCATTCCAGATTGCTATCTCAGGAACATCATACTCCTTATTTCAGAGGATTGGTGCAGTAGTGAGAAATGGGAGCAAGCTCTTCGTTGTTGGTACTGCTTCATCACTGGTTGGCACAAGTGTTACAAATGCCTTGATCAATGCAAAGAAGGCTGTTGGTTGCTCCGCAGAGGCTGAAGCTGATAATGTACCTATAGTATCCACTAGCCTTGCATACGGTGTCTATATGGCAGTTTCTAGCAATCTCAGGTACCAAGTATTGGCTGGTGTTATTGAACAAAGGATGTTGGAGCCACTACTACATCAACACAAGCTAATGCTAAGCGCAGTATGCTTTGCCGTTCGAACTGGCAACACATTCTTGGGTTCATTATTGTGGGTGGACTATGCTCGTTTAATAGGGATTCAGAAGGCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

376

Amino Acids

40.07

Weight (kDa)

8.84

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 150 - 327 4.5e-64 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 960
AccB1I GGYRCC 1 cut(s) 960
AccB7I CCANNNNNTGG 1 cut(s) 970
AccBSI CCGCTC 1 cut(s) 451
AccII CGCG 3 cut(s) 147, 165, 374
AccIII TCCGGA 1 cut(s) 218
AclWI GGATC 3 cut(s) 246, 358, 371
AcoI YGGCCR 2 cut(s) 148, 594
AcuI CTGAAG 1 cut(s) 906
AfaI GTAC 4 cut(s) 533, 805, 900, 962
AfiI CCNNNNNNNGG 4 cut(s) 312, 331, 373, 970
AgsI TTSAA 4 cut(s) 61, 298, 559, 986
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 5 cut(s) 397, 565, 790, 890, 1024
AluI AGCT 5 cut(s) 397, 565, 790, 890, 1024
Alw21I GWGCWC 2 cut(s) 108, 567
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 3 cut(s) 246, 358, 371
AlwNI CAGNNNCTG 1 cut(s) 884
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 4 cut(s) 148, 282, 594, 1122
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 4 cut(s) 411, 424, 427, 524
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
Asp718I GGTACC 1 cut(s) 960
AspLEI GCGC 5 cut(s) 142, 165, 374, 671, 1037
AspS9I GGNCC 2 cut(s) 283, 1123
AsuC2I CCSGG 3 cut(s) 181, 307, 369
AsuHPI GGTGA 2 cut(s) 505, 673
AsuII TTCGAA 1 cut(s) 1054
BaeGI GKGCMC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 596
BamHI GGATCC 1 cut(s) 363
BanI GGYRCC 1 cut(s) 960
BanII GRGCYC 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 2 cut(s) 108, 567
BbvI GCAGC 4 cut(s) 398, 411, 414, 511
BccI CCATC 1 cut(s) 283
BceAI ACGGC 3 cut(s) 259, 424, 1034
BcgI CGANNNNNNTGC 4 cut(s) 239, 273, 775, 809
BciVI GTATCC 1 cut(s) 919
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 3 cut(s) 181, 307, 369
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 2 cut(s) 915, 948
BfmI CTRYAG 3 cut(s) 428, 525, 903
BfuI GTATCC 1 cut(s) 919
BlpI GCTNAGC 1 cut(s) 1031
Bme1390I CCNGG 3 cut(s) 181, 307, 369
BmgT120I GGNCC 2 cut(s) 283, 1123
BmiI GGNNCC 3 cut(s) 365, 962, 1002
BmrFI CCNGG 3 cut(s) 181, 307, 369
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 419
Bpu1102I GCTNAGC 1 cut(s) 1031
Bpu14I TTCGAA 1 cut(s) 1054
BpuMI CCSGG 3 cut(s) 181, 307, 369
BsaBI GATNNNNATC 1 cut(s) 725
BsaJI CCNNGG 3 cut(s) 145, 180, 367
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 4 cut(s) 312, 331, 373, 970
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 4 cut(s) 154, 656, 822, 1063
Bse8I GATNNNNATC 1 cut(s) 725
BseAI TCCGGA 1 cut(s) 218
BseDI CCNNGG 3 cut(s) 145, 180, 367
BseGI GGATG 1 cut(s) 999
BseJI GATNNNNATC 1 cut(s) 725
BseLI CCNNNNNNNGG 4 cut(s) 312, 331, 373, 970
BseMII CTCAG 4 cut(s) 130, 679, 744, 970
BseNI ACTGG 4 cut(s) 154, 656, 822, 1063
BseRI GAGGAG 4 cut(s) 19, 22, 25, 34
BseSI GKGCMC 1 cut(s) 108
BseX3I CGGCCG 1 cut(s) 148
BseXI GCAGC 4 cut(s) 398, 411, 414, 511
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 786
Bsh1236I CGCG 3 cut(s) 147, 165, 374
Bsh1285I CGRYCG 2 cut(s) 151, 351
BshFI GGCC 4 cut(s) 150, 284, 596, 1124
BshNI GGYRCC 1 cut(s) 960
BsiEI CGRYCG 2 cut(s) 151, 351
BsiHKAI GWGCWC 2 cut(s) 108, 567
BsiSI CCGG 6 cut(s) 160, 180, 219, 261, 306, 369
BslFI GGGAC 2 cut(s) 67, 109
BslI CCNNNNNNNGG 4 cut(s) 312, 331, 373, 970
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 67, 109
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 4 cut(s) 150, 284, 596, 1124
Bsp119I TTCGAA 1 cut(s) 1054
Bsp1286I GDGCHC 2 cut(s) 108, 567
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 5 cut(s) 238, 348, 363, 466, 846
Bsp1720I GCTNAGC 1 cut(s) 1031
BspANI GGCC 4 cut(s) 150, 284, 596, 1124
BspCNI CTCAG 4 cut(s) 129, 678, 743, 969
BspEI TCCGGA 1 cut(s) 218
BspFNI CGCG 3 cut(s) 147, 165, 374
BspLI GGNNCC 3 cut(s) 365, 962, 1002
BspMAI CTGCAG 2 cut(s) 432, 529
BspPI GGATC 3 cut(s) 246, 358, 371
BspQI GCTCTTC 1 cut(s) 797
BspT104I TTCGAA 1 cut(s) 1054
BspT107I GGYRCC 1 cut(s) 960
BsrBI CCGCTC 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 4 cut(s) 154, 656, 822, 1063
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 145, 180, 367
BssMI GATC 5 cut(s) 238, 348, 363, 466, 846
Bst4CI ACNGT 3 cut(s) 71, 640, 929
Bst6I CTCTTC 3 cut(s) 43, 651, 797
BstBI TTCGAA 1 cut(s) 1054
BstC8I GCNNGC 4 cut(s) 167, 262, 326, 788
BstDEI CTNAG 5 cut(s) 116, 665, 730, 956, 1031
BstDSI CCRYGG 1 cut(s) 145
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 999
BstFNI CGCG 3 cut(s) 147, 165, 374
BstHHI GCGC 5 cut(s) 142, 165, 374, 671, 1037
BstKTI GATC 5 cut(s) 241, 351, 366, 469, 849
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 5 cut(s) 238, 348, 363, 466, 846
BstMCI CGRYCG 2 cut(s) 151, 351
BstMWI GCNNNNNNNGC 5 cut(s) 231, 602, 668, 860, 1041
BstSCI CCNGG 3 cut(s) 179, 305, 367
BstSFI CTRYAG 3 cut(s) 428, 525, 903
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 3 cut(s) 147, 165, 374
BstV1I GCAGC 4 cut(s) 398, 411, 414, 511
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BstZI CGGCCG 1 cut(s) 148
BsuI GTATCC 1 cut(s) 919
BsuRI GGCC 4 cut(s) 150, 284, 596, 1124
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 999
BtsIMutI CAGTG 1 cut(s) 815
Cac8I GCNNGC 4 cut(s) 167, 262, 326, 788
CaiI CAGNNNCTG 1 cut(s) 884
CciNI GCGGCCGC 1 cut(s) 148
CfoI GCGC 5 cut(s) 142, 165, 374, 671, 1037
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 283, 1123
Cfr42I CCGCGG 1 cut(s) 148
Csp6I GTAC 4 cut(s) 532, 804, 899, 961
CspCI CAANNNNNGTGG 2 cut(s) 901, 936
CviAII CATG 3 cut(s) 490, 613, 695
CviQI GTAC 4 cut(s) 532, 804, 899, 961
DdeI CTNAG 5 cut(s) 116, 665, 730, 956, 1031
DpnI GATC 5 cut(s) 240, 350, 365, 468, 848
DpnII GATC 5 cut(s) 238, 348, 363, 466, 846
EaeI YGGCCR 2 cut(s) 148, 594
EagI CGGCCG 1 cut(s) 148
Eam1104I CTCTTC 3 cut(s) 43, 651, 797
EarI CTCTTC 3 cut(s) 43, 651, 797
EciI GGCGGA 6 cut(s) 37, 79, 101, 201, 222, 376
Ecl136II GAGCTC 1 cut(s) 565
EclXI CGGCCG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 567
Eco52I CGGCCG 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 906
EcoICRI GAGCTC 1 cut(s) 565
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 3 cut(s) 493, 616, 698
FaqI GGGAC 2 cut(s) 67, 109
FatI CATG 3 cut(s) 489, 612, 694
FauI CCCGC 4 cut(s) 135, 227, 257, 303
FbaI TGATCA 1 cut(s) 846
FokI GGATG 1 cut(s) 1006
FriOI GRGCYC 1 cut(s) 567
FspBI CTAG 2 cut(s) 915, 948
GlaI GCGC 5 cut(s) 141, 164, 373, 670, 1036
GsaI CCCAGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 4 cut(s) 150, 284, 596, 1124
HapII CCGG 6 cut(s) 160, 180, 219, 261, 306, 369
HhaI GCGC 5 cut(s) 142, 165, 374, 671, 1037
Hin1II CATG 3 cut(s) 493, 616, 698
Hin6I GCGC 5 cut(s) 140, 163, 372, 669, 1035
HinP1I GCGC 5 cut(s) 140, 163, 372, 669, 1035
HinfI GANTC 2 cut(s) 302, 1114
HpaII CCGG 6 cut(s) 160, 180, 219, 261, 306, 369
HphI GGTGA 2 cut(s) 505, 673
Hpy166II GTNNAC 2 cut(s) 106, 1093
Hpy188I TCNGA 3 cut(s) 119, 756, 1119
Hpy188III TCNNGA 3 cut(s) 219, 718, 732
Hpy8I GTNNAC 2 cut(s) 106, 1093
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 5 cut(s) 22, 292, 325, 853, 1114
HpyCH4III ACNGT 3 cut(s) 71, 640, 929
HpyF10VI GCNNNNNNNGC 5 cut(s) 231, 602, 668, 860, 1041
HpyF3I CTNAG 5 cut(s) 116, 665, 730, 956, 1031
Hsp92II CATG 3 cut(s) 493, 616, 698
HspAI GCGC 5 cut(s) 140, 163, 372, 669, 1035
Kpn2I TCCGGA 1 cut(s) 218
KpnI GGTACC 1 cut(s) 964
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 846
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 5 cut(s) 238, 348, 363, 466, 846
LguI GCTCTTC 1 cut(s) 797
LmnI GCTCC 4 cut(s) 448, 783, 878, 1000
Lsp1109I GCAGC 4 cut(s) 398, 411, 414, 511
MaeI CTAG 2 cut(s) 915, 948
MaeIII GTNAC 1 cut(s) 832
MalI GATC 5 cut(s) 240, 350, 365, 468, 848
MbiI CCGCTC 1 cut(s) 451
MboI GATC 5 cut(s) 238, 348, 363, 466, 846
MboII GAAGA 6 cut(s) 30, 415, 478, 617, 638, 784
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 2 cut(s) 108, 567
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 1 cut(s) 600
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 258, 297, 978
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 715
MroI TCCGGA 1 cut(s) 218
MroNI GCCGGC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 596
MseI TTAA 2 cut(s) 480, 1106
MslI CAYNNNNRTG 1 cut(s) 1084
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 6 cut(s) 160, 180, 219, 261, 306, 369
MspR9I CCNGG 3 cut(s) 181, 307, 369
Mva1269I GAATGC 1 cut(s) 713
MvnI CGCG 3 cut(s) 147, 165, 374
MwoI GCNNNNNNNGC 5 cut(s) 231, 602, 668, 860, 1041
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 3 cut(s) 181, 307, 369
NdeII GATC 5 cut(s) 238, 348, 363, 466, 846
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 3 cut(s) 493, 616, 698
NlaIV GGNNCC 3 cut(s) 365, 962, 1002
NotI GCGGCCGC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 715
NspV TTCGAA 1 cut(s) 1054
PciSI GCTCTTC 1 cut(s) 797
PctI GAATGC 1 cut(s) 713
PdiI GCCGGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 1114
PflMI CCANNNNNTGG 1 cut(s) 970
Ple19I CGATCG 1 cut(s) 351
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 567
PspFI CCCAGC 1 cut(s) 437
PspN4I GGNNCC 3 cut(s) 365, 962, 1002
PspPI GGNCC 2 cut(s) 283, 1123
PstI CTGCAG 2 cut(s) 432, 529
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 1 cut(s) 363
PvuI CGATCG 1 cut(s) 351
RsaI GTAC 4 cut(s) 533, 805, 900, 962
RsaNI GTAC 4 cut(s) 532, 804, 899, 961
RseI CAYNNNNRTG 1 cut(s) 1084
SacI GAGCTC 1 cut(s) 567
SacII CCGCGG 1 cut(s) 148
SapI GCTCTTC 1 cut(s) 797
SaqAI TTAA 2 cut(s) 480, 1106
Sau3AI GATC 5 cut(s) 238, 348, 363, 466, 846
Sau96I GGNCC 2 cut(s) 283, 1123
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 3 cut(s) 181, 307, 369
SduI GDGCHC 2 cut(s) 108, 567
SetI ASST 9 cut(s) 111, 399, 486, 567, 792, 892, 904, 962, 1026
SfcI CTRYAG 3 cut(s) 428, 525, 903
Sfr303I CCGCGG 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 1054
SgrBI CCGCGG 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 1084
Sse9I AATT 1 cut(s) 600
SspMI CTAG 2 cut(s) 915, 948
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 3 cut(s) 179, 305, 367
TaaI ACNGT 3 cut(s) 71, 640, 929
TaqI TCGA 4 cut(s) 351, 567, 649, 1054
TasI AATT 1 cut(s) 600
TauI GCSGC 8 cut(s) 150, 153, 179, 207, 234, 249, 344, 347
TfiI GAWTC 1 cut(s) 1114
Tru1I TTAA 2 cut(s) 480, 1106
Tru9I TTAA 2 cut(s) 480, 1106
TscAI CASTG 1 cut(s) 822
TseI GCWGC 4 cut(s) 411, 424, 427, 524
TspDTI ATGAA 4 cut(s) 478, 601, 801, 1068
TspGWI ACGGA 2 cut(s) 63, 69
TspRI CASTG 1 cut(s) 822
Van91I CCANNNNNTGG 1 cut(s) 970
VneI GTGCAC 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 971
XspI CTAG 2 cut(s) 915, 948
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.