Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8100628.1

Orthogroup ID

OG0002218

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 584

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8100628.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 583 bp

atggcggtcgctaccttttccaatttctccactttcaccactcgcaacccctctctctcttcttcttcaccaaatcaccactctttcccgcgcaccacaaacttcactttcactactaccctcaccaaacctcccacctccctctctctcgccacgtcaccgcgcctcccccgctcctctttcgccacgtgtttctcctccggcggcccaccttcctccggcggcggcggcgggggaggagatcacggaaatggaggcggtgacggagagggaggggaggacagagagaggaacaaaaaggaggcggcgatggcgattgcggaggcgggaaggacggcggagagtctgccgaaggacttggcggcggcggtggaggcgggtcgggtccccgggttgattatgaagaggttctttgagctggagaagtcggtgatcttcaggtggctgcttcagtttgatggattcaaggagcggttgctggccgacgacttgttcttgaccaaagttggcatcgagtgcggtgttggaattttcaccaaggtctctaacctctgcttcttctacgtttttaccatcaagtttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

194

Amino Acids

20.72

Weight (kDa)

8.86

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12470
fragaria_vesca	FvH4_3g28550 FvH4_3g28550 FvH4_3g28550 FvH4_7g01660 FvH4_7g01660
malus_domestica	MD02G1301900.v1.1 MD03G1172700.v1.1 MD07G1022100.v1.1 MD07G1022200.v1.1 MD11G1190600.v1.1
prunus_persica	Prupe.2G022300_v2.0.a1 Prupe.4G253900_v2.0.a1
pyrus_communis	pycom02g25410 pycom03g12990 pycom07g01680 pycom11g16650
rosa_chinensis	RchiOBHm_Chr1g0317941 RchiOBHm_Chr5g0052771
rosa_laevigata	RLG00000030572 RLG00000034800
rosa_multiflora	Rmu_co8100628.1_g000001 Rmu_co8460597.1_g000001 Rmu_sc0010119.1_g000003 Rmu_sc0011424.1_g000037 Rmu_sc0014026.1_g000003 Rmu_ssc0000008.1_g000032
rosa_roxburghii	Rroxscaffold_1G00028580 Rroxscaffold_4G00330080
rosa_rugosa	Rorug01G0018600 Rorug01G0018700 Rorug05G0270000
rosa_samantha	Rh1AG030400 Rh1BG026800 Rh1CG029100 Rh1DG041100 Rh5AG342000 Rh5BG352600 Rh5CG379300 Rh5DG369000
rosa_wichuraiana	Rw0G017390 Rw1G002300 Rw5G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	174, 472
AccII	CGCG	2 cut(s)	91, 163
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	2 cut(s)	421, 434
AcvI	CACGTG	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	466
AjiI	CACGTC	1 cut(s)	156
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	547
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	205, 480
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	93, 165
AspS9I	GGNCC	2 cut(s)	206, 385
AsuC2I	CCSGG	2 cut(s)	390, 391
AsuHPI	GGTGA	8 cut(s)	28, 60, 68, 115, 150, 272, 442, 526
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	385
BbrPI	CACGTG	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	3 cut(s)	304, 452, 581
BceAI	ACGGC	1 cut(s)	351
BcnI	CCSGG	2 cut(s)	390, 391
BcoDI	GTCTC	1 cut(s)	547
BisI	GCNGC	8 cut(s)	205, 223, 226, 229, 306, 363, 366, 446
BlsI	GCNGC	8 cut(s)	206, 224, 227, 230, 307, 364, 367, 447
Bme1390I	CCNGG	2 cut(s)	390, 391
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	206, 385
BmiI	GGNNCC	2 cut(s)	386, 387
BmrFI	CCNGG	2 cut(s)	390, 391
BmsI	GCATC	1 cut(s)	519
BpmI	CTGGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	390, 391
BsaAI	YACGTR	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	3 cut(s)	388, 389, 537
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	388, 389, 537
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseRI	GAGGAG	3 cut(s)	166, 187, 252
BseXI	GCAGC	1 cut(s)	432
Bsh1236I	CGCG	2 cut(s)	91, 163
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	207, 482
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	3 cut(s)	201, 219, 390
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	207, 482
Bso31I	GGTCTC	1 cut(s)	547
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	2 cut(s)	241, 432
BspANI	GGCC	2 cut(s)	207, 482
BspFNI	CGCG	2 cut(s)	91, 163
BspLI	GGNNCC	2 cut(s)	386, 387
BspTNI	GGTCTC	1 cut(s)	547
BsrBI	CCGCTC	2 cut(s)	174, 472
BssECI	CCNNGG	3 cut(s)	388, 389, 537
BssMI	GATC	2 cut(s)	241, 432
BssT1I	CCWWGG	1 cut(s)	537
Bst6I	CTCTTC	2 cut(s)	64, 398
BstAPI	GCANNNNNTGC	1 cut(s)	516
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	480
BstFNI	CGCG	2 cut(s)	91, 163
BstHHI	GCGC	2 cut(s)	93, 165
BstKTI	GATC	2 cut(s)	244, 435
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	2 cut(s)	241, 432
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 228, 311, 374, 516
BstSCI	CCNGG	2 cut(s)	388, 389
BstUI	CGCG	2 cut(s)	91, 163
BstV1I	GCAGC	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	207, 482
BtgZI	GCGATG	1 cut(s)	323
BtrI	CACGTC	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	480
CfoI	GCGC	2 cut(s)	93, 165
Cfr13I	GGNCC	2 cut(s)	206, 385
Cfr9I	CCCGGG	1 cut(s)	389
CviJI	RGCY	4 cut(s)	207, 418, 445, 482
CviKI_1	RGCY	4 cut(s)	207, 418, 445, 482
DpnI	GATC	2 cut(s)	243, 434
DpnII	GATC	2 cut(s)	241, 432
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	64, 398
EarI	CTCTTC	2 cut(s)	64, 398
EciI	GGCGGA	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	421, 434
Eco72I	CACGTG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FaiI	YATR	1 cut(s)	401
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	371
FauI	CCCGC	5 cut(s)	96, 179, 224, 319, 370
Fnu4HI	GCNGC	8 cut(s)	205, 223, 226, 229, 306, 363, 366, 446
Fsp4HI	GCNGC	8 cut(s)	205, 223, 226, 229, 306, 363, 366, 446
GlaI	GCGC	2 cut(s)	92, 164
GluI	GCNGC	8 cut(s)	205, 223, 226, 229, 306, 363, 366, 446
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	207, 482
HapII	CCGG	3 cut(s)	201, 219, 390
HhaI	GCGC	2 cut(s)	93, 165
Hin6I	GCGC	2 cut(s)	91, 163
HinP1I	GCGC	2 cut(s)	91, 163
HinfI	GANTC	2 cut(s)	343, 462
HpaII	CCGG	3 cut(s)	201, 219, 390
HphI	GGTGA	8 cut(s)	28, 60, 68, 115, 150, 272, 442, 526
Hpy188III	TCNNGA	1 cut(s)	496
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	3 cut(s)	222, 324, 346
HpyCH4IV	ACGT	3 cut(s)	155, 188, 564
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 228, 311, 374, 516
HpySE526I	ACGT	3 cut(s)	155, 188, 564
HspAI	GCGC	2 cut(s)	91, 163
KflI	GGGWCCC	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	241, 432
LmnI	GCTCC	2 cut(s)	179, 469
LpnPI	CCDG	6 cut(s)	214, 232, 403, 404, 424, 464
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	519
MaeII	ACGT	3 cut(s)	155, 188, 564
MaeIII	GTNAC	2 cut(s)	156, 260
MalI	GATC	2 cut(s)	243, 434
MbiI	CCGCTC	2 cut(s)	174, 472
MboI	GATC	2 cut(s)	241, 432
MboII	GAAGA	6 cut(s)	51, 54, 57, 415, 427, 550
MluCI	AATT	2 cut(s)	22, 528
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	3 cut(s)	201, 219, 390
MspR9I	CCNGG	2 cut(s)	390, 391
MvnI	CGCG	2 cut(s)	91, 163
MwoI	GCNNNNNNNGC	5 cut(s)	171, 228, 311, 374, 516
NciI	CCSGG	2 cut(s)	390, 391
NdeII	GATC	2 cut(s)	241, 432
NlaIV	GGNNCC	2 cut(s)	386, 387
NmuCI	GTSAC	2 cut(s)	156, 260
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	462
PkrI	GCNGC	8 cut(s)	206, 224, 227, 230, 307, 364, 367, 447
PleI	GAGTC	1 cut(s)	351
PmaCI	CACGTG	1 cut(s)	189
PmlI	CACGTG	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	351
Ppu21I	YACGTR	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	385
PspCI	CACGTG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	386, 387
PspPI	GGNCC	2 cut(s)	206, 385
PspPPI	RGGWCCY	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	249
SatI	GCNGC	8 cut(s)	205, 223, 226, 229, 306, 363, 366, 446
Sau3AI	GATC	2 cut(s)	241, 432
Sau96I	GGNCC	2 cut(s)	206, 385
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	390, 391
SfaNI	GCATC	1 cut(s)	519
SinI	GGWCC	1 cut(s)	385
SmaI	CCCGGG	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	2 cut(s)	22, 528
StyD4I	CCNGG	2 cut(s)	388, 389
StyI	CCWWGG	1 cut(s)	537
TaiI	ACGT	3 cut(s)	158, 191, 567
TaqI	TCGA	1 cut(s)	513
TasI	AATT	2 cut(s)	22, 528
TauI	GCSGC	7 cut(s)	207, 225, 228, 231, 308, 365, 368
TfiI	GAWTC	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	156, 260
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	2 cut(s)	156, 260
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	2 cut(s)	261, 279
TspMI	CCCGGG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	528
XmaI	CCCGGG	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.