Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011424.1

Orthogroup ID

OG0002218

Physical Location & Seq

Genomic Coordinates Reverse (-)

141021 .. 142383

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011424.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggccattatagctgattttatgcttgtctggcttcctgctcctactgtttcacttcgaaaacctcttgttgtcagtgctgggcgtgttgctaagttcttctatggctgtcctgacaatgcatttcaggtagctttgtctggaacatcttactcagtcttacagagaataggcgcaatcttgagaaatggagcaaaactattcgtggttgggactggtgcatctctgattggtactggtgtaacaaatgcattgattgctgcaagaaaagctttggacaaatcctttcttggtgaagcagaagatgttcccatattatcaactagtgcagcctatggggtctatatggcagtttctagcaatctaaggtaccaagttctcgctggaataatcgaacaacgtattctagaacccttgctacaccaacacaagcttgcactgagtgcaatttgctttgctgttcgaactggaaacacatttttggggtccttgatgtgggttgattatgcacgctggattggaattcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

176

Amino Acids

18.91

Weight (kDa)

9.59

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12470
fragaria_vesca	FvH4_3g28550 FvH4_3g28550 FvH4_3g28550 FvH4_7g01660 FvH4_7g01660
malus_domestica	MD02G1301900.v1.1 MD03G1172700.v1.1 MD07G1022100.v1.1 MD07G1022200.v1.1 MD11G1190600.v1.1
prunus_persica	Prupe.2G022300_v2.0.a1 Prupe.4G253900_v2.0.a1
pyrus_communis	pycom02g25410 pycom03g12990 pycom07g01680 pycom11g16650
rosa_chinensis	RchiOBHm_Chr1g0317941 RchiOBHm_Chr5g0052771
rosa_laevigata	RLG00000030572 RLG00000034800
rosa_multiflora	Rmu_co8100628.1_g000001 Rmu_co8460597.1_g000001 Rmu_sc0010119.1_g000003 Rmu_sc0011424.1_g000037 Rmu_sc0014026.1_g000003 Rmu_ssc0000008.1_g000032
rosa_roxburghii	Rroxscaffold_1G00028580 Rroxscaffold_4G00330080
rosa_rugosa	Rorug01G0018600 Rorug01G0018700 Rorug05G0270000
rosa_samantha	Rh1AG030400 Rh1BG026800 Rh1CG029100 Rh1DG041100 Rh5AG342000 Rh5BG352600 Rh5CG379300 Rh5DG369000
rosa_wichuraiana	Rw0G017390 Rw1G002300 Rw5G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	369
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	522
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	235, 371
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	1 cut(s)	527
AhlI	ACTAGT	1 cut(s)	323
AluBI	AGCT	4 cut(s)	14, 134, 272, 433
AluI	AGCT	4 cut(s)	14, 134, 272, 433
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	260, 329
ApoI	RAATTY	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	306
Asp718I	GGTACC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	305
AsuII	TTCGAA	2 cut(s)	58, 463
AvaII	GGWCC	1 cut(s)	486
BaeI	ACNNNNGTAYC	2 cut(s)	225, 258
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	247, 341
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	3 cut(s)	324, 357, 407
BisI	GCNGC	2 cut(s)	261, 330
BlsI	GCNGC	2 cut(s)	262, 331
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	2 cut(s)	371, 487
BmsI	GCATC	1 cut(s)	230
Bpu14I	TTCGAA	2 cut(s)	58, 463
BpuEI	CTTGAG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	3 cut(s)	220, 241, 472
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	168, 431
BseNI	ACTGG	3 cut(s)	220, 241, 472
BseXI	GCAGC	2 cut(s)	247, 341
BseYI	CCCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	2 cut(s)	58, 463
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	167, 432
BspLI	GGNNCC	2 cut(s)	371, 487
BspT104I	TTCGAA	2 cut(s)	58, 463
BspT107I	GGYRCC	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	220, 241, 472
Bst4CI	ACNGT	1 cut(s)	49
BstAPI	GCANNNNNTGC	2 cut(s)	257, 443
BstBI	TTCGAA	2 cut(s)	58, 463
BstC8I	GCNNGC	2 cut(s)	435, 511
BstDEI	CTNAG	4 cut(s)	93, 154, 365, 440
BstHHI	GCGC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 31, 257, 269, 443
BstV1I	GCAGC	2 cut(s)	247, 341
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	82, 437
Cac8I	GCNNGC	2 cut(s)	435, 511
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	234, 370
CviJI	RGCY	8 cut(s)	5, 14, 34, 108, 134, 272, 332, 433
CviKI_1	RGCY	8 cut(s)	5, 14, 34, 108, 134, 272, 332, 433
CviQI	GTAC	2 cut(s)	234, 370
DdeI	CTNAG	4 cut(s)	93, 154, 365, 440
DraIII	CACNNNGTG	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	522
EcoT22I	ATGCAT	2 cut(s)	124, 253
FaiI	YATR	8 cut(s)	11, 23, 105, 314, 336, 345, 347, 507
FalI	AAGNNNNNCTT	2 cut(s)	256, 288
FaqI	GGGAC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	261, 330
Fsp4HI	GCNGC	2 cut(s)	261, 330
FspBI	CTAG	3 cut(s)	324, 357, 407
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	261, 330
GsaI	CCCAGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	2 cut(s)	270, 431
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	4 cut(s)	113, 141, 181, 407
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	8 cut(s)	122, 221, 251, 263, 329, 437, 446, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 31, 257, 269, 443
HpyF3I	CTNAG	4 cut(s)	93, 154, 365, 440
HpySE526I	ACGT	1 cut(s)	400
HspAI	GCGC	1 cut(s)	174
KpnI	GGTACC	1 cut(s)	373
LmnI	GCTCC	2 cut(s)	46, 191
Lsp1109I	GCAGC	2 cut(s)	247, 341
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	3 cut(s)	324, 357, 407
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	91, 314
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	447, 522
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	75
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	124, 253
MroXI	GAANNNNTTC	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	5 cut(s)	11, 31, 257, 269, 443
NlaIV	GGNNCC	2 cut(s)	371, 487
NsiI	ATGCAT	2 cut(s)	124, 253
NspV	TTCGAA	2 cut(s)	58, 463
PdmI	GAANNNNTTC	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	262, 331
PpuMI	RGGWCCY	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	486
PspFI	CCCAGC	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	371, 487
PspPI	GGNCC	1 cut(s)	486
PspPPI	RGGWCCY	1 cut(s)	486
PsrI	GAACNNNNNNTAC	2 cut(s)	402, 434
RsaI	GTAC	2 cut(s)	235, 371
RsaNI	GTAC	2 cut(s)	234, 370
SatI	GCNGC	2 cut(s)	261, 330
Sau96I	GGNCC	1 cut(s)	486
SetI	ASST	8 cut(s)	16, 67, 132, 136, 274, 371, 403, 435
SfaNI	GCATC	1 cut(s)	230
SfuI	TTCGAA	2 cut(s)	58, 463
SinI	GGWCC	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	323
Sse9I	AATT	2 cut(s)	447, 522
SspMI	CTAG	3 cut(s)	324, 357, 407
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	3 cut(s)	58, 393, 463
TasI	AATT	2 cut(s)	447, 522
TscAI	CASTG	2 cut(s)	82, 444
TseI	GCWGC	2 cut(s)	260, 329
TspRI	CASTG	2 cut(s)	82, 444
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	1 cut(s)	522
XbaI	TCTAGA	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	3 cut(s)	324, 357, 407
Zsp2I	ATGCAT	2 cut(s)	124, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.