Rw0G017390

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00777
OG0002218
Physical Location & Seq
Reverse (-)
24006 .. 26175
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G017390.1

Sequence Viewer

Length: 831 bp
ATGGCGATTGCGGAGGCGGGAAGGACGGCGGAGAGTCTGCCGAAGGACTTGGCGGCGGCGGTGGAGGCGGGTCGGGTCCCCGGGTTGATTATGAAGAGGTTCTTTGAGCTGGAGAAGTCGGTGATCTTCAGGTGGCTGCTTCAGTTTGATGGATTCAAGGAGCGGTTGCTGGCCGACGACTTGTTCTTGACCAAAGTTGGCATCGAGTGCGGTGTTGGAATTTTCACCAAGACTGCTGCAGAGTTGGAGCGGCGCAGAGAAAAATTTACCAAGGAGCTGGATTTTGTGTTTGCGGATGTGGTGATGGCCATTATAGCTGATTTTATGCTTGTCTGGCTTCCTGCTCCTACTGTTTCACTTCGAAAACCTCTTGTTGTCAGTGCTGGGCGTGTTGCTAAGTTCTTCTATGGCTGTCCTGACAATGCATTTCAGGTAGCTTTGTCTGGAACATCTTACTCAGTCTTACAGAGAATAGGCGCAATCTTGAGAAATGGAGCAAAACTATTCGTGGTTGGGACTGGTGCATCTCTGATTGGTACTGGTGTAACAAATGCATTGATTGCTGCAAGAAAAGCTTTGGACAAATCCTTTCTTGGTGAAGCAGAAGATGTTCCCATATTATCAACTAGTGCCTATGGGGTCTATATGGCAGTTTCTAGCAATCTAAGGTACCAAGTTCTCGCTGGAATAATCGAACAACGTATTCTAGAACCCTTGCTACACCAACACAAGCTTGCACTGAGTGCAATTTGCTTTGCTGTTCGAACTGGAAACACATTTTTGGGGTCCTTGATGTGGGTTGATTATGCACGCTGGATTGGAATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

276

Amino Acids

30.21

Weight (kDa)

9.11

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 54 - 230 4.1e-64 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 669
AccB1I GGYRCC 1 cut(s) 669
AccBSI CCGCTC 2 cut(s) 163, 250
AcoI YGGCCR 2 cut(s) 171, 306
AcsI RAATTY 3 cut(s) 219, 263, 822
AcuI CTGAAG 2 cut(s) 112, 125
AdeI CACNNNGTG 1 cut(s) 743
AfaI GTAC 2 cut(s) 538, 671
AfiI CCNNNNNNNGG 1 cut(s) 795
AgsI TTSAA 2 cut(s) 157, 827
AhlI ACTAGT 1 cut(s) 626
AluBI AGCT 6 cut(s) 109, 277, 317, 437, 575, 733
AluI AGCT 6 cut(s) 109, 277, 317, 437, 575, 733
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 2 cut(s) 171, 306
ApeKI GCWGC 3 cut(s) 136, 236, 563
ApoI RAATTY 3 cut(s) 219, 263, 822
Asp700I GAANNNNTTC 2 cut(s) 98, 609
Asp718I GGTACC 1 cut(s) 669
AspLEI GCGC 2 cut(s) 255, 479
AspS9I GGNCC 2 cut(s) 76, 786
AsuC2I CCSGG 2 cut(s) 81, 82
AsuHPI GGTGA 4 cut(s) 133, 217, 313, 608
AsuII TTCGAA 2 cut(s) 361, 763
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 76, 786
BaeI ACNNNNGTAYC 2 cut(s) 528, 561
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 1 cut(s) 669
BbvI GCAGC 3 cut(s) 123, 223, 550
BccI CCATC 2 cut(s) 143, 298
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 2 cut(s) 81, 82
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 3 cut(s) 627, 657, 707
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 6 cut(s) 54, 57, 137, 237, 251, 564
BlsI GCNGC 6 cut(s) 55, 58, 138, 238, 252, 565
Bme1390I CCNGG 2 cut(s) 81, 82
Bme18I GGWCC 2 cut(s) 76, 786
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 76, 786
BmiI GGNNCC 4 cut(s) 77, 78, 671, 787
BmrFI CCNGG 2 cut(s) 81, 82
BmsI GCATC 2 cut(s) 210, 533
BpmI CTGGAG 1 cut(s) 131
Bpu14I TTCGAA 2 cut(s) 361, 763
BpuEI CTTGAG 1 cut(s) 505
BpuMI CCSGG 2 cut(s) 81, 82
BsaJI CCNNGG 3 cut(s) 79, 80, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 795
Bse1I ACTGG 3 cut(s) 523, 544, 772
BseDI CCNNGG 3 cut(s) 79, 80, 270
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 795
BseMII CTCAG 2 cut(s) 471, 731
BseNI ACTGG 3 cut(s) 523, 544, 772
BseXI GCAGC 3 cut(s) 123, 223, 550
BseYI CCCAGC 1 cut(s) 383
BshFI GGCC 2 cut(s) 173, 308
BshNI GGYRCC 1 cut(s) 669
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 62, 529
BslI CCNNNNNNNGG 1 cut(s) 795
BsmFI GGGAC 2 cut(s) 62, 529
BsnI GGCC 2 cut(s) 173, 308
BsoBI CYCGRG 1 cut(s) 80
Bsp119I TTCGAA 2 cut(s) 361, 763
Bsp143I GATC 1 cut(s) 123
BspANI GGCC 2 cut(s) 173, 308
BspCNI CTCAG 2 cut(s) 470, 732
BspLI GGNNCC 4 cut(s) 77, 78, 671, 787
BspMAI CTGCAG 1 cut(s) 241
BspT104I TTCGAA 2 cut(s) 361, 763
BspT107I GGYRCC 1 cut(s) 669
BsrBI CCGCTC 2 cut(s) 163, 250
BsrI ACTGG 3 cut(s) 523, 544, 772
BssECI CCNNGG 3 cut(s) 79, 80, 270
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 89
BstAPI GCANNNNNTGC 3 cut(s) 207, 560, 743
BstBI TTCGAA 2 cut(s) 361, 763
BstC8I GCNNGC 3 cut(s) 171, 735, 811
BstDEI CTNAG 4 cut(s) 396, 457, 665, 740
BstF5I GGATG 1 cut(s) 301
BstHHI GCGC 2 cut(s) 255, 479
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 7 cut(s) 65, 207, 314, 334, 560, 572, 743
BstSCI CCNGG 2 cut(s) 79, 80
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 123, 223, 550
BstXI CCANNNNNNTGG 1 cut(s) 277
BsuRI GGCC 2 cut(s) 173, 308
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 385, 737
Cac8I GCNNGC 3 cut(s) 171, 735, 811
CfoI GCGC 2 cut(s) 255, 479
Cfr13I GGNCC 2 cut(s) 76, 786
Cfr9I CCCGGG 1 cut(s) 80
Csp6I GTAC 2 cut(s) 537, 670
CviQI GTAC 2 cut(s) 537, 670
DdeI CTNAG 4 cut(s) 396, 457, 665, 740
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DraIII CACNNNGTG 1 cut(s) 743
EaeI YGGCCR 2 cut(s) 171, 306
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 76, 786
Eco57I CTGAAG 2 cut(s) 112, 125
Eco88I CYCGRG 1 cut(s) 80
EcoO109I RGGNCCY 2 cut(s) 76, 786
EcoRI GAATTC 1 cut(s) 822
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 2 cut(s) 427, 556
ErhI CCWWGG 1 cut(s) 270
FaiI YATR 9 cut(s) 92, 314, 326, 408, 617, 636, 645, 647, 807
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 559, 591
FaqI GGGAC 2 cut(s) 62, 529
FauI CCCGC 2 cut(s) 10, 61
Fnu4HI GCNGC 6 cut(s) 54, 57, 137, 237, 251, 564
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 6 cut(s) 54, 57, 137, 237, 251, 564
FspBI CTAG 3 cut(s) 627, 657, 707
GlaI GCGC 2 cut(s) 254, 478
GluI GCNGC 6 cut(s) 54, 57, 137, 237, 251, 564
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 2 cut(s) 173, 308
HapII CCGG 1 cut(s) 81
HhaI GCGC 2 cut(s) 255, 479
Hin6I GCGC 2 cut(s) 253, 477
HinP1I GCGC 2 cut(s) 253, 477
HindIII AAGCTT 2 cut(s) 573, 731
HinfI GANTC 2 cut(s) 34, 153
HpaII CCGG 1 cut(s) 81
HphI GGTGA 4 cut(s) 133, 217, 313, 608
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 5 cut(s) 187, 416, 444, 484, 707
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 15, 37
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 700
HpyCH4V TGCA 8 cut(s) 239, 425, 524, 554, 566, 737, 746, 809
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 207, 314, 334, 560, 572, 743
HpyF3I CTNAG 4 cut(s) 396, 457, 665, 740
HpySE526I ACGT 1 cut(s) 700
HspAI GCGC 2 cut(s) 253, 477
KflI GGGWCCC 1 cut(s) 76
KpnI GGTACC 1 cut(s) 673
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 5 cut(s) 160, 247, 274, 349, 494
Lsp1109I GCAGC 3 cut(s) 123, 223, 550
LweI GCATC 2 cut(s) 210, 533
MaeI CTAG 3 cut(s) 627, 657, 707
MaeII ACGT 1 cut(s) 700
MaeIII GTNAC 1 cut(s) 544
MalI GATC 1 cut(s) 125
MbiI CCGCTC 2 cut(s) 163, 250
MboI GATC 1 cut(s) 123
MboII GAAGA 4 cut(s) 106, 118, 394, 617
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 4 cut(s) 219, 263, 747, 822
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 2 cut(s) 196, 225
MnlI CCTC 4 cut(s) 7, 58, 90, 378
Mox20I TGGCCA 1 cut(s) 308
Mph1103I ATGCAT 2 cut(s) 427, 556
MroXI GAANNNNTTC 2 cut(s) 98, 609
MscI TGGCCA 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 81, 82
MwoI GCNNNNNNNGC 7 cut(s) 65, 207, 314, 334, 560, 572, 743
NciI CCSGG 2 cut(s) 81, 82
NdeII GATC 1 cut(s) 123
NlaIV GGNNCC 4 cut(s) 77, 78, 671, 787
NsiI ATGCAT 2 cut(s) 427, 556
NspV TTCGAA 2 cut(s) 361, 763
PdmI GAANNNNTTC 2 cut(s) 98, 609
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 6 cut(s) 55, 58, 138, 238, 252, 565
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PpuMI RGGWCCY 2 cut(s) 76, 786
Psp5II RGGWCCY 2 cut(s) 76, 786
PspFI CCCAGC 1 cut(s) 383
PspN4I GGNNCC 4 cut(s) 77, 78, 671, 787
PspPI GGNCC 2 cut(s) 76, 786
PspPPI RGGWCCY 2 cut(s) 76, 786
PsrI GAACNNNNNNTAC 2 cut(s) 702, 734
PstI CTGCAG 1 cut(s) 241
RsaI GTAC 2 cut(s) 538, 671
RsaNI GTAC 2 cut(s) 537, 670
SatI GCNGC 6 cut(s) 54, 57, 137, 237, 251, 564
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 76, 786
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 81, 82
SfaNI GCATC 2 cut(s) 210, 533
SfcI CTRYAG 1 cut(s) 237
SfuI TTCGAA 2 cut(s) 361, 763
SinI GGWCC 2 cut(s) 76, 786
SmaI CCCGGG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 4 cut(s) 219, 263, 747, 822
SspMI CTAG 3 cut(s) 627, 657, 707
StyD4I CCNGG 2 cut(s) 79, 80
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 703
TaqI TCGA 4 cut(s) 204, 361, 693, 763
TasI AATT 4 cut(s) 219, 263, 747, 822
TauI GCSGC 3 cut(s) 56, 59, 253
TfiI GAWTC 1 cut(s) 153
TscAI CASTG 2 cut(s) 385, 744
TseI GCWGC 3 cut(s) 136, 236, 563
TspDTI ATGAA 1 cut(s) 107
TspMI CCCGGG 1 cut(s) 80
TspRI CASTG 2 cut(s) 385, 744
VpaK11BI GGWCC 2 cut(s) 76, 786
XapI RAATTY 3 cut(s) 219, 263, 822
XbaI TCTAGA 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XmaI CCCGGG 1 cut(s) 80
XmnI GAANNNNTTC 2 cut(s) 98, 609
XspI CTAG 3 cut(s) 627, 657, 707
Zsp2I ATGCAT 2 cut(s) 427, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.