Rw1G002300

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002218
Physical Location & Seq
Forward (+)
4093002 .. 4095169
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002300.1

Sequence Viewer

Length: 834 bp
ATGGCGATTGCGGAGGCGGGAAGGACGGCGGAGAGTCTGCCGAAGGACTTGGCGGCGGCGGTGGAGGCGGGTCGGGTCCCCGGGTTGATTATGAAGAGGTTCTTTGAGCTGGAGAAGTCGGTGATCTTCAGGTGGCTGCTTCAGTTTGATGGATTCAAGGAGCGGTTGCTGGCCGACGACTTGTTCTTGACCAAAGTTGGCATCGAGTGCGGTGTTGGAATTTTCACCAAGACTGCTGCAGAGTTGGAGCGGCGCAGAGAAAAATTTACCAAGGAGCTGGATTTTGTGTTTGCGGATGTGGTGATGGCCATTATAGCTGATTTTATGCTTGTCTGGCTTCCTGCTCCTACTGTTTCGCTTCGAAAACCTCTTGTTGTCAGTGCTGGGCGTGTTGCTAAGTTCTTCTATGGCTGTCCTGACAATGCATTTCAGGTAGCTTTGTCTGGAACATCTTACTCAGTCTTACAGAGAATAGGCGCAATCTTGAGAAATGGAGCAAAACTATTCGTGGTTGGGACTGGTGCATCTCTGATTGGTACTGGTGTAACAAATGCATTGATTGCTGCAAGAAAAGCTTTGGACAAATCCTTTCTTGGTGAAGCGGAAGATGTTCCCATATTATCAACTAGTGCAGCCTATGGGGTCTATATGGCAGTTTCTAGCAATCTAAGGTACCAAGTTCTCGCTGGAATAATCGAACAACGTATTCTAGAACCCTTGCTACACCAACACAAGCTTGCACTGAGTGCAATTTGCTTTGCTGTTCGAACTGGAAACACATTTTTGGGGTCCTTGATGTGGGTTGATTATGCACGCTGGATTGGAATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

277

Amino Acids

30.29

Weight (kDa)

9.11

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 54 - 231 2.5e-66 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 672
AccB1I GGYRCC 1 cut(s) 672
AccBSI CCGCTC 2 cut(s) 163, 250
AcoI YGGCCR 2 cut(s) 171, 306
AcsI RAATTY 3 cut(s) 219, 263, 825
AcuI CTGAAG 2 cut(s) 112, 125
AdeI CACNNNGTG 1 cut(s) 746
AfaI GTAC 2 cut(s) 538, 674
AfiI CCNNNNNNNGG 1 cut(s) 798
AgsI TTSAA 2 cut(s) 157, 830
AhlI ACTAGT 1 cut(s) 626
AluBI AGCT 6 cut(s) 109, 277, 317, 437, 575, 736
AluI AGCT 6 cut(s) 109, 277, 317, 437, 575, 736
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 2 cut(s) 171, 306
ApeKI GCWGC 4 cut(s) 136, 236, 563, 632
ApoI RAATTY 3 cut(s) 219, 263, 825
Asp700I GAANNNNTTC 2 cut(s) 98, 609
Asp718I GGTACC 1 cut(s) 672
AspLEI GCGC 2 cut(s) 255, 479
AspS9I GGNCC 2 cut(s) 76, 789
AsuC2I CCSGG 2 cut(s) 81, 82
AsuHPI GGTGA 4 cut(s) 133, 217, 313, 608
AsuII TTCGAA 2 cut(s) 361, 766
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 76, 789
BaeI ACNNNNGTAYC 2 cut(s) 528, 561
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 1 cut(s) 672
BbvI GCAGC 4 cut(s) 123, 223, 550, 644
BccI CCATC 2 cut(s) 143, 298
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 2 cut(s) 81, 82
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 3 cut(s) 627, 660, 710
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 7 cut(s) 54, 57, 137, 237, 251, 564, 633
BlsI GCNGC 7 cut(s) 55, 58, 138, 238, 252, 565, 634
Bme1390I CCNGG 2 cut(s) 81, 82
Bme18I GGWCC 2 cut(s) 76, 789
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 76, 789
BmiI GGNNCC 4 cut(s) 77, 78, 674, 790
BmrFI CCNGG 2 cut(s) 81, 82
BmsI GCATC 2 cut(s) 210, 533
BpmI CTGGAG 1 cut(s) 131
Bpu14I TTCGAA 2 cut(s) 361, 766
BpuEI CTTGAG 1 cut(s) 505
BpuMI CCSGG 2 cut(s) 81, 82
BsaJI CCNNGG 3 cut(s) 79, 80, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse1I ACTGG 3 cut(s) 523, 544, 775
BseDI CCNNGG 3 cut(s) 79, 80, 270
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMII CTCAG 2 cut(s) 471, 734
BseNI ACTGG 3 cut(s) 523, 544, 775
BseXI GCAGC 4 cut(s) 123, 223, 550, 644
BseYI CCCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 651
BshFI GGCC 2 cut(s) 173, 308
BshNI GGYRCC 1 cut(s) 672
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 62, 529
BslI CCNNNNNNNGG 1 cut(s) 798
BsmFI GGGAC 2 cut(s) 62, 529
BsnI GGCC 2 cut(s) 173, 308
BsoBI CYCGRG 1 cut(s) 80
Bsp119I TTCGAA 2 cut(s) 361, 766
Bsp143I GATC 1 cut(s) 123
BspANI GGCC 2 cut(s) 173, 308
BspCNI CTCAG 2 cut(s) 470, 735
BspLI GGNNCC 4 cut(s) 77, 78, 674, 790
BspMAI CTGCAG 1 cut(s) 241
BspT104I TTCGAA 2 cut(s) 361, 766
BspT107I GGYRCC 1 cut(s) 672
BsrBI CCGCTC 2 cut(s) 163, 250
BsrI ACTGG 3 cut(s) 523, 544, 775
BssECI CCNNGG 3 cut(s) 79, 80, 270
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 89
BstAPI GCANNNNNTGC 3 cut(s) 207, 560, 746
BstBI TTCGAA 2 cut(s) 361, 766
BstC8I GCNNGC 3 cut(s) 171, 738, 814
BstDEI CTNAG 4 cut(s) 396, 457, 668, 743
BstF5I GGATG 1 cut(s) 301
BstHHI GCGC 2 cut(s) 255, 479
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 7 cut(s) 65, 207, 314, 334, 560, 572, 746
BstSCI CCNGG 2 cut(s) 79, 80
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 4 cut(s) 123, 223, 550, 644
BstXI CCANNNNNNTGG 1 cut(s) 277
BsuRI GGCC 2 cut(s) 173, 308
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 385, 740
Cac8I GCNNGC 3 cut(s) 171, 738, 814
CfoI GCGC 2 cut(s) 255, 479
Cfr13I GGNCC 2 cut(s) 76, 789
Cfr9I CCCGGG 1 cut(s) 80
Csp6I GTAC 2 cut(s) 537, 673
CviQI GTAC 2 cut(s) 537, 673
DdeI CTNAG 4 cut(s) 396, 457, 668, 743
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DraIII CACNNNGTG 1 cut(s) 746
EaeI YGGCCR 2 cut(s) 171, 306
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 76, 789
Eco57I CTGAAG 2 cut(s) 112, 125
Eco88I CYCGRG 1 cut(s) 80
EcoO109I RGGNCCY 2 cut(s) 76, 789
EcoRI GAATTC 1 cut(s) 825
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 2 cut(s) 427, 556
ErhI CCWWGG 1 cut(s) 270
FaiI YATR 9 cut(s) 92, 314, 326, 408, 617, 639, 648, 650, 810
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 559, 591
FaqI GGGAC 2 cut(s) 62, 529
FauI CCCGC 2 cut(s) 10, 61
Fnu4HI GCNGC 7 cut(s) 54, 57, 137, 237, 251, 564, 633
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 7 cut(s) 54, 57, 137, 237, 251, 564, 633
FspBI CTAG 3 cut(s) 627, 660, 710
GlaI GCGC 2 cut(s) 254, 478
GluI GCNGC 7 cut(s) 54, 57, 137, 237, 251, 564, 633
GsaI CCCAGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 2 cut(s) 173, 308
HapII CCGG 1 cut(s) 81
HhaI GCGC 2 cut(s) 255, 479
Hin6I GCGC 2 cut(s) 253, 477
HinP1I GCGC 2 cut(s) 253, 477
HindIII AAGCTT 2 cut(s) 573, 734
HinfI GANTC 2 cut(s) 34, 153
HpaII CCGG 1 cut(s) 81
HphI GGTGA 4 cut(s) 133, 217, 313, 608
Hpy188I TCNGA 1 cut(s) 531
Hpy188III TCNNGA 5 cut(s) 187, 416, 444, 484, 710
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 15, 37
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 703
HpyCH4V TGCA 9 cut(s) 239, 425, 524, 554, 566, 632, 740, 749, 812
HpyF10VI GCNNNNNNNGC 7 cut(s) 65, 207, 314, 334, 560, 572, 746
HpyF3I CTNAG 4 cut(s) 396, 457, 668, 743
HpySE526I ACGT 1 cut(s) 703
HspAI GCGC 2 cut(s) 253, 477
KflI GGGWCCC 1 cut(s) 76
KpnI GGTACC 1 cut(s) 676
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 5 cut(s) 160, 247, 274, 349, 494
Lsp1109I GCAGC 4 cut(s) 123, 223, 550, 644
LweI GCATC 2 cut(s) 210, 533
MaeI CTAG 3 cut(s) 627, 660, 710
MaeII ACGT 1 cut(s) 703
MaeIII GTNAC 1 cut(s) 544
MalI GATC 1 cut(s) 125
MbiI CCGCTC 2 cut(s) 163, 250
MboI GATC 1 cut(s) 123
MboII GAAGA 4 cut(s) 106, 118, 394, 617
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 4 cut(s) 219, 263, 750, 825
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 2 cut(s) 196, 225
MnlI CCTC 4 cut(s) 7, 58, 90, 378
Mox20I TGGCCA 1 cut(s) 308
Mph1103I ATGCAT 2 cut(s) 427, 556
MroXI GAANNNNTTC 2 cut(s) 98, 609
MscI TGGCCA 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 81, 82
MwoI GCNNNNNNNGC 7 cut(s) 65, 207, 314, 334, 560, 572, 746
NciI CCSGG 2 cut(s) 81, 82
NdeII GATC 1 cut(s) 123
NlaIV GGNNCC 4 cut(s) 77, 78, 674, 790
NsiI ATGCAT 2 cut(s) 427, 556
NspV TTCGAA 2 cut(s) 361, 766
PdmI GAANNNNTTC 2 cut(s) 98, 609
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 7 cut(s) 55, 58, 138, 238, 252, 565, 634
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PpuMI RGGWCCY 2 cut(s) 76, 789
Psp5II RGGWCCY 2 cut(s) 76, 789
PspFI CCCAGC 1 cut(s) 383
PspN4I GGNNCC 4 cut(s) 77, 78, 674, 790
PspPI GGNCC 2 cut(s) 76, 789
PspPPI RGGWCCY 2 cut(s) 76, 789
PsrI GAACNNNNNNTAC 2 cut(s) 705, 737
PstI CTGCAG 1 cut(s) 241
RsaI GTAC 2 cut(s) 538, 674
RsaNI GTAC 2 cut(s) 537, 673
SatI GCNGC 7 cut(s) 54, 57, 137, 237, 251, 564, 633
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 76, 789
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 81, 82
SfaNI GCATC 2 cut(s) 210, 533
SfcI CTRYAG 1 cut(s) 237
SfuI TTCGAA 2 cut(s) 361, 766
SinI GGWCC 2 cut(s) 76, 789
SmaI CCCGGG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 4 cut(s) 219, 263, 750, 825
SspMI CTAG 3 cut(s) 627, 660, 710
StyD4I CCNGG 2 cut(s) 79, 80
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 706
TaqI TCGA 4 cut(s) 204, 361, 696, 766
TasI AATT 4 cut(s) 219, 263, 750, 825
TauI GCSGC 3 cut(s) 56, 59, 253
TfiI GAWTC 1 cut(s) 153
TscAI CASTG 2 cut(s) 385, 747
TseI GCWGC 4 cut(s) 136, 236, 563, 632
TspDTI ATGAA 1 cut(s) 107
TspMI CCCGGG 1 cut(s) 80
TspRI CASTG 2 cut(s) 385, 747
VpaK11BI GGWCC 2 cut(s) 76, 789
XapI RAATTY 3 cut(s) 219, 263, 825
XbaI TCTAGA 1 cut(s) 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XmaI CCCGGG 1 cut(s) 80
XmnI GAANNNNTTC 2 cut(s) 98, 609
XspI CTAG 3 cut(s) 627, 660, 710
Zsp2I ATGCAT 2 cut(s) 427, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.