FvH4_7g01660

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002218
Physical Location & Seq
Forward (+)
2052311 .. 2056556
4246 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01660.t1

Sequence Viewer

Length: 1140 bp
ATGGCGGTCGCCACCTTCTCCAACTTCTCCTCTTTCACCACGCGCTCACTCTCTCTCTCTTCTTCTTCTTCTTCTTTCCCGCCATCCACAAGCCTCAGTTTCACTATCCTCACCAAAACCAGATCCCCCACCTCCCTCTCTCTCGCCACGTCACCCTTCCCCCGCTCCTCTTTCGCCACGTGTTTCTCCTCCGGCGGTCCCCCCTCCGTCGGCGGCGGCGGTGGCGGAGGAGGCGGAGATCACAACAATGGCGGAGGCGGAGGAGACGGAGAGGAGGACCGGGAGAGGAACAAGGCGGAGGCGGCGATGGCGATAGCGGAGGCGGGAAGGACGGCGGAGAGTCTGCCGAAGGACTTGGCGGCGGCGGTGGAGGCGGGCCGGGTGCCCGGGTTGATTGTGAAGAGGTTCTTTGAGCTGGAGAAGTCGCCCATCTTCAGGTGGCTGCTTCAGTTTGATGGATTCAAGGAGCGGTTGCTCGCCGACGATTTGTTCTTGACCAAAGTTGGCATCGAGTGCGGTGTCGGAATTTTCACCAAGACTGCTGCAGAGTTGGAGCGCCGCAGAGAGAAATTTACCAAGGAGCTGGATTTTGTGTTTGCCGATGTGGTGATGGCCATTATAGCTGATTTCATGCTTGTCTGGCTTCCTGCTCCTACTGTTTCGCTTCGAAAACCTCTTGTTGTTAGTGCTGGGCGTGTTGCCAAGTTCTTCTATGGCTGCCCTGACAATGCATTCCAGGTAGCTTTGTCCGGAACATCTTACTCACTCTTGCAGAGAATAGGCGCAATATTGAGAAATGGAGCAAAATTATTCGTGGTTGGGACTGGTGCATCTCTGGTTGGTACAGGTGTCACAAATGCATTGATTGCTGCAAGAAAAGCTTTGGACAAATCCTTTGCTGGTGAAGCGGAAGATGTTCCCATATTATCAACTAGTGCAGCCTATGGAGTTTATATGGCAGTTTCTAGCAATCTAAGGTACCAAGTTCTCGCTGGAATAATTGAACAACGTATTCTAGAACCCTTGCTACACCAACACAAGCTTGCACTGAGTGCAATTTGCTTTGCTGTTCGAACTGGAAACACATTTTTGGGGTCCTTGATGTGGGTTGATTATGCACGCTGGATTGGAATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

380

Amino Acids

40.26

Weight (kDa)

9.0

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 156 - 333 1.1e-66 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 978
AccB1I GGYRCC 2 cut(s) 382, 978
AccBSI CCGCTC 2 cut(s) 165, 469
AccII CGCG 1 cut(s) 43
AccIII TCCGGA 1 cut(s) 749
AclWI GGATC 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 3 cut(s) 525, 569, 1131
AcuI CTGAAG 2 cut(s) 418, 431
AcvI CACGTG 1 cut(s) 180
AdeI CACNNNGTG 1 cut(s) 1052
AfaI GTAC 2 cut(s) 844, 980
AfiI CCNNNNNNNGG 3 cut(s) 209, 435, 1104
AflIII ACRYGT 1 cut(s) 179
AgsI TTSAA 3 cut(s) 463, 1004, 1136
AhlI ACTAGT 1 cut(s) 932
AjiI CACGTC 1 cut(s) 150
AjnI CCWGG 1 cut(s) 735
AluBI AGCT 6 cut(s) 415, 583, 623, 743, 881, 1042
AluI AGCT 6 cut(s) 415, 583, 623, 743, 881, 1042
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 117
Ama87I CYCGRG 1 cut(s) 386
Aor13HI TCCGGA 1 cut(s) 749
AoxI GGCC 2 cut(s) 376, 612
ApeKI GCWGC 5 cut(s) 442, 542, 717, 869, 938
ApoI RAATTY 3 cut(s) 525, 569, 1131
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
Asp700I GAANNNNTTC 2 cut(s) 404, 915
Asp718I GGTACC 1 cut(s) 978
AspLEI GCGC 3 cut(s) 45, 558, 785
AspS9I GGNCC 4 cut(s) 197, 277, 376, 1095
AsuC2I CCSGG 4 cut(s) 281, 380, 387, 388
AsuHPI GGTGA 6 cut(s) 28, 103, 144, 523, 619, 914
AsuII TTCGAA 2 cut(s) 667, 1072
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 3 cut(s) 197, 277, 1095
BaeGI GKGCMC 1 cut(s) 387
BaeI ACNNNNGTAYC 2 cut(s) 834, 867
BalI TGGCCA 1 cut(s) 614
BanI GGYRCC 2 cut(s) 382, 978
BbrPI CACGTG 1 cut(s) 180
BbvI GCAGC 5 cut(s) 429, 529, 704, 856, 950
BccI CCATC 5 cut(s) 91, 301, 437, 449, 604
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 1 cut(s) 737
BcnI CCSGG 4 cut(s) 281, 380, 387, 388
BcoDI GTCTC 1 cut(s) 258
BcuI ACTAGT 1 cut(s) 932
BfaI CTAG 3 cut(s) 933, 966, 1016
BfmI CTRYAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 559
Bme1390I CCNGG 5 cut(s) 281, 380, 387, 388, 737
Bme18I GGWCC 3 cut(s) 197, 277, 1095
BmeT110I CYCGRG 1 cut(s) 386
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 4 cut(s) 197, 277, 376, 1095
BmiI GGNNCC 4 cut(s) 199, 384, 980, 1096
BmrFI CCNGG 5 cut(s) 281, 380, 387, 388, 737
BmsI GCATC 2 cut(s) 516, 839
BpmI CTGGAG 1 cut(s) 437
Bpu14I TTCGAA 2 cut(s) 667, 1072
BpuMI CCSGG 4 cut(s) 281, 380, 387, 388
BsaAI YACGTR 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 386, 576
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 435, 1104
Bse1I ACTGG 2 cut(s) 829, 1081
BseAI TCCGGA 1 cut(s) 749
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 2 cut(s) 386, 576
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 3 cut(s) 209, 435, 1104
BseMII CTCAG 2 cut(s) 109, 1040
BseNI ACTGG 2 cut(s) 829, 1081
BseRI GAGGAG 6 cut(s) 19, 157, 178, 243, 276, 287
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 5 cut(s) 429, 529, 704, 856, 950
BseYI CCCAGC 1 cut(s) 689
BsgI GTGCAG 1 cut(s) 957
Bsh1236I CGCG 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 378, 614
BshNI GGYRCC 2 cut(s) 382, 978
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 5 cut(s) 192, 280, 379, 387, 750
BslFI GGGAC 2 cut(s) 183, 835
BslI CCNNNNNNNGG 3 cut(s) 209, 435, 1104
BsmAI GTCTC 1 cut(s) 258
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 2 cut(s) 183, 835
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 2 cut(s) 378, 614
BsoBI CYCGRG 1 cut(s) 386
Bsp119I TTCGAA 2 cut(s) 667, 1072
Bsp1286I GDGCHC 1 cut(s) 387
Bsp13I TCCGGA 1 cut(s) 749
Bsp143I GATC 2 cut(s) 122, 238
BspANI GGCC 2 cut(s) 378, 614
BspCNI CTCAG 2 cut(s) 108, 1041
BspEI TCCGGA 1 cut(s) 749
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 4 cut(s) 199, 384, 980, 1096
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 1 cut(s) 117
BspT104I TTCGAA 2 cut(s) 667, 1072
BspT107I GGYRCC 2 cut(s) 382, 978
BsrBI CCGCTC 2 cut(s) 165, 469
BsrI ACTGG 2 cut(s) 829, 1081
BssECI CCNNGG 2 cut(s) 386, 576
BssMI GATC 2 cut(s) 122, 238
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 1 cut(s) 658
Bst6I CTCTTC 2 cut(s) 64, 395
BstAPI GCANNNNNTGC 3 cut(s) 513, 866, 1052
BstBAI YACGTR 1 cut(s) 180
BstBI TTCGAA 2 cut(s) 667, 1072
BstC8I GCNNGC 4 cut(s) 376, 477, 1044, 1120
BstDEI CTNAG 3 cut(s) 95, 974, 1049
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 559
BstHHI GCGC 3 cut(s) 45, 558, 785
BstKTI GATC 2 cut(s) 125, 241
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 122, 238
BstMCI CGRYCG 1 cut(s) 9
BstNI CCWGG 1 cut(s) 737
BstSCI CCNGG 5 cut(s) 279, 378, 385, 386, 735
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 387
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 5 cut(s) 429, 529, 704, 856, 950
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 1 cut(s) 122
BsuRI GGCC 2 cut(s) 378, 614
BtgZI GCGATG 1 cut(s) 320
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 1046
Cac8I GCNNGC 4 cut(s) 376, 477, 1044, 1120
CfoI GCGC 3 cut(s) 45, 558, 785
Cfr13I GGNCC 4 cut(s) 197, 277, 376, 1095
Cfr9I CCCGGG 1 cut(s) 386
Csp6I GTAC 2 cut(s) 843, 979
CviAII CATG 1 cut(s) 631
CviQI GTAC 2 cut(s) 843, 979
DdeI CTNAG 3 cut(s) 95, 974, 1049
DpnI GATC 2 cut(s) 124, 240
DpnII GATC 2 cut(s) 122, 238
DraIII CACNNNGTG 1 cut(s) 1052
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 2 cut(s) 64, 395
EarI CTCTTC 2 cut(s) 64, 395
EciI GGCGGA 6 cut(s) 240, 249, 267, 273, 311, 350
Eco130I CCWWGG 1 cut(s) 576
Eco47I GGWCC 3 cut(s) 197, 277, 1095
Eco57I CTGAAG 2 cut(s) 418, 431
Eco72I CACGTG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 1095
EcoRI GAATTC 1 cut(s) 1131
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 576
EcoT22I ATGCAT 2 cut(s) 733, 862
ErhI CCWWGG 1 cut(s) 576
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 1 cut(s) 634
FaiI YATR 8 cut(s) 620, 632, 714, 923, 945, 954, 956, 1116
FalI AAGNNNNNCTT 4 cut(s) 392, 424, 865, 897
FaqI GGGAC 2 cut(s) 183, 835
FatI CATG 1 cut(s) 630
FauI CCCGC 4 cut(s) 87, 170, 316, 367
FokI GGATG 1 cut(s) 70
FspBI CTAG 3 cut(s) 933, 966, 1016
GlaI GCGC 3 cut(s) 44, 557, 784
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 559
HaeIII GGCC 2 cut(s) 378, 614
HapII CCGG 5 cut(s) 192, 280, 379, 387, 750
HhaI GCGC 3 cut(s) 45, 558, 785
Hin1II CATG 1 cut(s) 634
Hin6I GCGC 3 cut(s) 43, 556, 783
HinP1I GCGC 3 cut(s) 43, 556, 783
HindIII AAGCTT 2 cut(s) 879, 1040
HinfI GANTC 2 cut(s) 340, 459
HpaII CCGG 5 cut(s) 192, 280, 379, 387, 750
HphI GGTGA 6 cut(s) 28, 103, 144, 523, 619, 914
Hpy188I TCNGA 1 cut(s) 524
Hpy188III TCNNGA 3 cut(s) 493, 750, 1016
Hpy99I CGWCG 2 cut(s) 212, 485
HpyAV CCTTC 4 cut(s) 25, 166, 321, 343
HpyCH4III ACNGT 1 cut(s) 658
HpyCH4IV ACGT 3 cut(s) 149, 179, 1009
HpyF3I CTNAG 3 cut(s) 95, 974, 1049
HpySE526I ACGT 3 cut(s) 149, 179, 1009
Hsp92II CATG 1 cut(s) 634
HspAI GCGC 3 cut(s) 43, 556, 783
Kpn2I TCCGGA 1 cut(s) 749
KpnI GGTACC 1 cut(s) 982
Kzo9I GATC 2 cut(s) 122, 238
LmnI GCTCC 6 cut(s) 170, 466, 553, 580, 655, 800
Lsp1109I GCAGC 5 cut(s) 429, 529, 704, 856, 950
LweI GCATC 2 cut(s) 516, 839
MaeI CTAG 3 cut(s) 933, 966, 1016
MaeII ACGT 3 cut(s) 149, 179, 1009
MaeIII GTNAC 2 cut(s) 150, 850
MalI GATC 2 cut(s) 124, 240
MbiI CCGCTC 2 cut(s) 165, 469
MboI GATC 2 cut(s) 122, 238
MboII GAAGA 9 cut(s) 51, 54, 57, 60, 63, 412, 424, 700, 923
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 6 cut(s) 525, 569, 806, 999, 1056, 1131
MluNI TGGCCA 1 cut(s) 614
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 3 cut(s) 45, 502, 531
Mox20I TGGCCA 1 cut(s) 614
Mph1103I ATGCAT 2 cut(s) 733, 862
MroI TCCGGA 1 cut(s) 749
MroXI GAANNNNTTC 2 cut(s) 404, 915
MscI TGGCCA 1 cut(s) 614
MslI CAYNNNNRTG 1 cut(s) 246
Msp20I TGGCCA 1 cut(s) 614
MspI CCGG 5 cut(s) 192, 280, 379, 387, 750
MspR9I CCNGG 5 cut(s) 281, 380, 387, 388, 737
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 1 cut(s) 43
NciI CCSGG 4 cut(s) 281, 380, 387, 388
NdeII GATC 2 cut(s) 122, 238
NlaIII CATG 1 cut(s) 634
NlaIV GGNNCC 4 cut(s) 199, 384, 980, 1096
NmuCI GTSAC 2 cut(s) 150, 850
NsiI ATGCAT 2 cut(s) 733, 862
NspV TTCGAA 2 cut(s) 667, 1072
PctI GAATGC 1 cut(s) 731
PdmI GAANNNNTTC 2 cut(s) 404, 915
PfeI GAWTC 1 cut(s) 459
PleI GAGTC 1 cut(s) 348
PmaCI CACGTG 1 cut(s) 180
PmlI CACGTG 1 cut(s) 180
PpsI GAGTC 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 180
PpuMI RGGWCCY 1 cut(s) 1095
Psp5II RGGWCCY 1 cut(s) 1095
Psp6I CCWGG 1 cut(s) 735
PspCI CACGTG 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 4 cut(s) 199, 384, 980, 1096
PspPI GGNCC 4 cut(s) 197, 277, 376, 1095
PspPPI RGGWCCY 1 cut(s) 1095
PsrI GAACNNNNNNTAC 2 cut(s) 1011, 1043
PstI CTGCAG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 122
RsaI GTAC 2 cut(s) 844, 980
RsaNI GTAC 2 cut(s) 843, 979
RseI CAYNNNNRTG 1 cut(s) 246
Sau3AI GATC 2 cut(s) 122, 238
Sau96I GGNCC 4 cut(s) 197, 277, 376, 1095
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 5 cut(s) 281, 380, 387, 388, 737
SduI GDGCHC 1 cut(s) 387
SfaNI GCATC 2 cut(s) 516, 839
SfcI CTRYAG 1 cut(s) 543
SfuI TTCGAA 2 cut(s) 667, 1072
SinI GGWCC 3 cut(s) 197, 277, 1095
SmaI CCCGGG 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 246
SpeI ACTAGT 1 cut(s) 932
Sse9I AATT 6 cut(s) 525, 569, 806, 999, 1056, 1131
SspI AATATT 1 cut(s) 789
SspMI CTAG 3 cut(s) 933, 966, 1016
StyD4I CCNGG 5 cut(s) 279, 378, 385, 386, 735
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 1 cut(s) 658
TaiI ACGT 3 cut(s) 152, 182, 1012
TaqI TCGA 3 cut(s) 510, 667, 1072
TasI AATT 6 cut(s) 525, 569, 806, 999, 1056, 1131
TauI GCSGC 6 cut(s) 216, 219, 305, 362, 365, 561
TfiI GAWTC 1 cut(s) 459
TscAI CASTG 1 cut(s) 1053
TseFI GTSAC 2 cut(s) 150, 850
TseI GCWGC 5 cut(s) 442, 542, 717, 869, 938
Tsp45I GTSAC 2 cut(s) 150, 850
TspDTI ATGAA 1 cut(s) 619
TspGWI ACGGA 2 cut(s) 196, 282
TspMI CCCGGG 1 cut(s) 386
TspRI CASTG 1 cut(s) 1053
VpaK11BI GGWCC 3 cut(s) 197, 277, 1095
XapI RAATTY 3 cut(s) 525, 569, 1131
XbaI TCTAGA 1 cut(s) 1015
XcmI CCANNNNNNNNNTGG 1 cut(s) 989
XmaI CCCGGG 1 cut(s) 386
XmnI GAANNNNTTC 2 cut(s) 404, 915
XspI CTAG 3 cut(s) 933, 966, 1016
Zsp2I ATGCAT 2 cut(s) 733, 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.