Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002218

Physical Location & Seq

Genomic Coordinates Forward (+)

1863139 .. 1863375

Gene Structure 237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1022100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGTGGAGGCAGGGAGGTTGTCGGAGAGTCTGTCGAAGGACTTAGCGGCGGCCATAAAGGCCGGACGGGTGCGGGGCTTGATTGTGAAGAGGTTCTTTGAGCTGGAGAAGTCGGCGGTGTTCAGATGGTTGCTTGGGTTTGATGGGTTCAAGGAGCGGTTGCTTGCGGACGACTTGTTCTTGACCAAAGTTGGCATCGAGTGCGGCGTTGGAAGGAAACTATTGAAAATGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

79

Amino Acids

8.7

Weight (kDa)

9.8

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12470
fragaria_vesca	FvH4_3g28550 FvH4_3g28550 FvH4_3g28550 FvH4_7g01660 FvH4_7g01660
malus_domestica	MD02G1301900.v1.1 MD03G1172700.v1.1 MD07G1022100.v1.1 MD07G1022200.v1.1 MD11G1190600.v1.1
prunus_persica	Prupe.2G022300_v2.0.a1 Prupe.4G253900_v2.0.a1
pyrus_communis	pycom02g25410 pycom03g12990 pycom07g01680 pycom11g16650
rosa_chinensis	RchiOBHm_Chr1g0317941 RchiOBHm_Chr5g0052771
rosa_laevigata	RLG00000030572 RLG00000034800
rosa_multiflora	Rmu_co8100628.1_g000001 Rmu_co8460597.1_g000001 Rmu_sc0010119.1_g000003 Rmu_sc0011424.1_g000037 Rmu_sc0014026.1_g000003 Rmu_ssc0000008.1_g000032
rosa_roxburghii	Rroxscaffold_1G00028580 Rroxscaffold_4G00330080
rosa_rugosa	Rorug01G0018600 Rorug01G0018700 Rorug05G0270000
rosa_samantha	Rh1AG030400 Rh1BG026800 Rh1CG029100 Rh1DG041100 Rh5AG342000 Rh5BG352600 Rh5CG379300 Rh5DG369000
rosa_wichuraiana	Rw0G017390 Rw1G002300 Rw5G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	157
AciI	CCGC	7 cut(s)	47, 50, 73, 116, 157, 167, 204
AcoI	YGGCCR	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	151, 226
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
AoxI	GGCC	2 cut(s)	51, 60
Asp700I	GAANNNNTTC	1 cut(s)	92
BccI	CCATC	2 cut(s)	120, 137
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	48, 51, 205
BlsI	GCNGC	3 cut(s)	49, 52, 206
BmsI	GCATC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
BshFI	GGCC	2 cut(s)	53, 62
BsiSI	CCGG	1 cut(s)	63
BsnI	GGCC	2 cut(s)	53, 62
BspACI	CCGC	7 cut(s)	47, 50, 73, 116, 157, 167, 204
BspANI	GGCC	2 cut(s)	53, 62
BsrBI	CCGCTC	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 201
BsuRI	GGCC	2 cut(s)	53, 62
Cac8I	GCNNGC	1 cut(s)	165
CviJI	RGCY	4 cut(s)	53, 62, 78, 103
CviKI_1	RGCY	4 cut(s)	53, 62, 78, 103
DdeI	CTNAG	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
FaiI	YATR	1 cut(s)	56
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	48, 51, 205
Fsp4HI	GCNGC	3 cut(s)	48, 51, 205
GluI	GCNGC	3 cut(s)	48, 51, 205
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	53, 62
HapII	CCGG	1 cut(s)	63
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	25, 125
Hpy188III	TCNNGA	2 cut(s)	181, 234
HpyAV	CCTTC	2 cut(s)	31, 207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 201
HpyF3I	CTNAG	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	2 cut(s)	76, 89
LweI	GCATC	1 cut(s)	204
MbiI	CCGCTC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	2 cut(s)	9, 84
MroXI	GAANNNNTTC	1 cut(s)	92
MspI	CCGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	59, 201
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	49, 52, 206
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
SatI	GCNGC	3 cut(s)	48, 51, 205
SchI	GAGTC	1 cut(s)	37
SetI	ASST	3 cut(s)	20, 95, 105
SfaNI	GCATC	1 cut(s)	204
SfiI	GGCCNNNNNGGCC	1 cut(s)	59
SsiI	CCGC	7 cut(s)	47, 50, 73, 116, 157, 167, 204
TaqI	TCGA	2 cut(s)	35, 198
TauI	GCSGC	3 cut(s)	50, 53, 207
XmnI	GAANNNNTTC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.