Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002218

Physical Location & Seq

Genomic Coordinates Forward (+)

2179436 .. 2184302

Gene Structure 4867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G022300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCAGCAGTCACCAGCTTCTCCAACTTCTCCACTACCCAAACTCTCTTTCTCTTTTCACCAAACAACCCTCAGCATTTCTCTATATCCCCAAAAAGCCTCTCTCTCACTCTCATTTCCCGCAGTAAAGTCACCACAACTCCCTCCCTCTCATTCACCACCTCCCGCCTCACCCGCTTCTCCTTCATCGCCAGCTCATCCGCCGCATACGGCGGTGGGCCCCCTGCTGGCGGCGGGGTAGGTGGCGGAGGTAACGACAATAACAATCAGGACAACGGTGGCGGTGATGACGGCGGTGAGGATCGGGAGCGGAACAAGGTGGAGGCCGTGGCGGCAATAGCGGAGGCGGGGCGGTCGTCGGAGAGCCTGCCCAAGGACTTGGCGGCGGCGATAGAGGCGGGCCGTGTGCCGGGGTCTATTGTGAGAAGGTTCTTTGAGCTGGAGAAGTCGGCGGTGTTCAGGTGGCTGCTTGGGTTTGATGGGTTTAAGGAGCGGTTGCTTGCGGATGACTTGTTCTTGACTAAGGTTGCTATAGAGTGTGGTGTTGGAATATTCACCAAGACTGCTGCAGAGTTAGAGCGGCGCCGCGAAAATTTTACCAAAGAGCTGGATTTTGTTTTTGCGGATGTGGTGATGGCCATTATAGCCGATTTTATGCTTGTTTGGCTTCCTGCTCCTACTGTTTCACTTCGACCTCCTCTTACTGTCAGTGCGGGGCGTCTTGCTAAGTTCTTCTATGGGTGTCCTGATAATGCTTTTCAGGTAGCTTTGGCTGGAACATCTTACTCACTCTTACAGAGAATAGGTGCAATAGTGAGAAATGGAGCTAAACTATTTGCAGTCGGGACTGGTGCATCTCTGGTTGGTACGGGTGTAACAAATGCATTGATTAATGCACGAAAAGCTATCGACAAATCTTTCGCTGGTGAAGCAGAGGATGTTCCCATATTATCAACTAGTGTAGCCTATGGAGTTTATATGGCAGTTTCTAGCAATCTAAGGTACCAAGTTCTCGCTGGAGTAATTGAACAACGAATTCTAGAACCCTTGCTACACCAACACAAGATTATACTTAGTGCAATTTGCTTTGCTGTTCGAACAGGCAACACATTCTTGGGGTCCTTGATGTGGGTTGATTATGCACGGTGGGTTGGAATTCAAAAGATACGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

392

Amino Acids

41.88

Weight (kDa)

8.91

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12470
fragaria_vesca	FvH4_3g28550 FvH4_3g28550 FvH4_3g28550 FvH4_7g01660 FvH4_7g01660
malus_domestica	MD02G1301900.v1.1 MD03G1172700.v1.1 MD07G1022100.v1.1 MD07G1022200.v1.1 MD11G1190600.v1.1
prunus_persica	Prupe.2G022300_v2.0.a1 Prupe.4G253900_v2.0.a1
pyrus_communis	pycom02g25410 pycom03g12990 pycom07g01680 pycom11g16650
rosa_chinensis	RchiOBHm_Chr1g0317941 RchiOBHm_Chr5g0052771
rosa_laevigata	RLG00000030572 RLG00000034800
rosa_multiflora	Rmu_co8100628.1_g000001 Rmu_co8460597.1_g000001 Rmu_sc0010119.1_g000003 Rmu_sc0011424.1_g000037 Rmu_sc0014026.1_g000003 Rmu_ssc0000008.1_g000032
rosa_roxburghii	Rroxscaffold_1G00028580 Rroxscaffold_4G00330080
rosa_rugosa	Rorug01G0018600 Rorug01G0018700 Rorug05G0270000
rosa_samantha	Rh1AG030400 Rh1BG026800 Rh1CG029100 Rh1DG041100 Rh5AG342000 Rh5BG352600 Rh5CG379300 Rh5DG369000
rosa_wichuraiana	Rw0G017390 Rw1G002300 Rw5G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1002
AccB1I	GGYRCC	2 cut(s)	582, 1002
AccBSI	CCGCTC	3 cut(s)	310, 493, 580
AccII	CGCG	1 cut(s)	588
AclWI	GGATC	1 cut(s)	309
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	3 cut(s)	592, 1035, 1155
AcyI	GRCGYC	2 cut(s)	583, 718
AfaI	GTAC	2 cut(s)	868, 1004
AfiI	CCNNNNNNNGG	5 cut(s)	227, 230, 373, 409, 1128
AgsI	TTSAA	2 cut(s)	1028, 1160
AhlI	ACTAGT	1 cut(s)	956
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	7 cut(s)	18, 195, 439, 607, 767, 827, 905
AluI	AGCT	7 cut(s)	18, 195, 439, 607, 767, 827, 905
AlwI	GGATC	1 cut(s)	309
AoxI	GGCC	4 cut(s)	218, 324, 400, 636
ApaI	GGGCCC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	5, 466, 566
ApoI	RAATTY	3 cut(s)	592, 1035, 1155
ArsI	GACNNNNNNTTYG	2 cut(s)	902, 934
AseI	ATTAAT	1 cut(s)	891
Asp718I	GGTACC	1 cut(s)	1002
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	4 cut(s)	218, 219, 400, 1119
AsuC2I	CCSGG	1 cut(s)	411
AsuII	TTCGAA	1 cut(s)	1096
AvaII	GGWCC	1 cut(s)	1119
BaeGI	GKGCMC	1 cut(s)	222
BaeI	ACNNNNGTAYC	2 cut(s)	858, 891
BalI	TGGCCA	1 cut(s)	638
BanI	GGYRCC	2 cut(s)	582, 1002
BanII	GRGCYC	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	17, 453, 553
BccI	CCATC	2 cut(s)	473, 628
BceAI	ACGGC	4 cut(s)	226, 307, 311, 387
BcnI	CCSGG	1 cut(s)	411
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	3 cut(s)	957, 990, 1040
BfmI	CTRYAG	2 cut(s)	531, 567
BfoI	RGCGCY	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	1119
BmgT120I	GGNCC	4 cut(s)	218, 219, 400, 1119
BmiI	GGNNCC	5 cut(s)	220, 221, 584, 1004, 1120
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	863
BpmI	CTGGAG	2 cut(s)	461, 1038
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	1096
BpuMI	CCSGG	1 cut(s)	411
BsaHI	GRCGYC	2 cut(s)	583, 718
BsaJI	CCNNGG	3 cut(s)	327, 372, 410
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 230, 373, 409, 1128
Bse1I	ACTGG	1 cut(s)	853
BseDI	CCNNGG	3 cut(s)	327, 372, 410
BseGI	GGATG	4 cut(s)	197, 511, 631, 943
BseLI	CCNNNNNNNGG	5 cut(s)	227, 230, 373, 409, 1128
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	853
BseRI	GAGGAG	1 cut(s)	687
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	17, 453, 553
Bsh1236I	CGCG	1 cut(s)	588
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	4 cut(s)	220, 326, 402, 638
BshNI	GGYRCC	2 cut(s)	582, 1002
BsiEI	CGRYCG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	859
BslI	CCNNNNNNNGG	5 cut(s)	227, 230, 373, 409, 1128
BsmFI	GGGAC	1 cut(s)	859
BsnI	GGCC	4 cut(s)	220, 326, 402, 638
Bsp119I	TTCGAA	1 cut(s)	1096
Bsp120I	GGGCCC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	301
BspANI	GGCC	4 cut(s)	220, 326, 402, 638
BspCNI	CTCAG	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	588
BspLI	GGNNCC	5 cut(s)	220, 221, 584, 1004, 1120
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	1096
BspT107I	GGYRCC	2 cut(s)	582, 1002
BsrBI	CCGCTC	3 cut(s)	310, 493, 580
BsrI	ACTGG	1 cut(s)	853
BssECI	CCNNGG	3 cut(s)	327, 372, 410
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	2 cut(s)	583, 718
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	4 cut(s)	278, 682, 706, 1146
BstACI	GRCGYC	2 cut(s)	583, 718
BstBI	TTCGAA	1 cut(s)	1096
BstC8I	GCNNGC	5 cut(s)	193, 229, 368, 400, 501
BstDEI	CTNAG	5 cut(s)	72, 522, 726, 998, 1073
BstDSI	CCRYGG	1 cut(s)	327
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	4 cut(s)	197, 511, 631, 943
BstFNI	CGCG	1 cut(s)	588
BstH2I	RGCGCY	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	8 cut(s)	174, 332, 338, 395, 644, 664, 902, 929
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	2 cut(s)	531, 567
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	3 cut(s)	17, 453, 553
BstXI	CCANNNNNNTGG	2 cut(s)	379, 607
BsuRI	GGCC	4 cut(s)	220, 326, 402, 638
BtgI	CCRYGG	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	197, 511, 631, 943
BtsIMutI	CAGTG	1 cut(s)	715
Cac8I	GCNNGC	5 cut(s)	193, 229, 368, 400, 501
CfoI	GCGC	1 cut(s)	585
Cfr13I	GGNCC	4 cut(s)	218, 219, 400, 1119
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	867, 1003
CviQI	GTAC	2 cut(s)	867, 1003
DdeI	CTNAG	5 cut(s)	72, 522, 726, 998, 1073
DinI	GGCGCC	1 cut(s)	584
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	636
EciI	GGCGGA	2 cut(s)	190, 261
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	1119
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	2 cut(s)	219, 1119
EcoRI	GAATTC	2 cut(s)	1035, 1155
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	584
EheI	GGCGCC	1 cut(s)	584
ErhI	CCWWGG	1 cut(s)	372
FaqI	GGGAC	1 cut(s)	859
FauI	CCCGC	7 cut(s)	128, 173, 182, 227, 340, 391, 706
FokI	GGATG	4 cut(s)	184, 518, 638, 950
FriOI	GRGCYC	1 cut(s)	222
FspBI	CTAG	3 cut(s)	957, 990, 1040
GlaI	GCGC	1 cut(s)	584
GsuI	CTGGAG	2 cut(s)	461, 1038
HaeII	RGCGCY	1 cut(s)	586
HaeIII	GGCC	4 cut(s)	220, 326, 402, 638
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	707
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	2 cut(s)	583, 718
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HpaII	CCGG	1 cut(s)	410
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	6 cut(s)	269, 305, 517, 746, 844, 1040
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	193, 420
HpyCH4III	ACNGT	4 cut(s)	278, 682, 706, 1146
HpyCH4V	TGCA	8 cut(s)	569, 809, 839, 854, 884, 896, 1079, 1142
HpyF10VI	GCNNNNNNNGC	8 cut(s)	174, 332, 338, 395, 644, 664, 902, 929
HpyF3I	CTNAG	5 cut(s)	72, 522, 726, 998, 1073
Hsp92I	GRCGYC	2 cut(s)	583, 718
HspAI	GCGC	1 cut(s)	583
KasI	GGCGCC	1 cut(s)	582
KpnI	GGTACC	1 cut(s)	1006
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	4 cut(s)	307, 490, 679, 824
Lsp1109I	GCAGC	3 cut(s)	17, 453, 553
LweI	GCATC	1 cut(s)	863
MaeI	CTAG	3 cut(s)	957, 990, 1040
MaeIII	GTNAC	4 cut(s)	10, 130, 251, 874
MalI	GATC	1 cut(s)	303
MbiI	CCGCTC	3 cut(s)	310, 493, 580
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	724
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	5 cut(s)	592, 1023, 1035, 1080, 1155
MluNI	TGGCCA	1 cut(s)	638
Mly113I	GGCGCC	1 cut(s)	583
MmeI	TCCRAC	4 cut(s)	48, 339, 526, 1132
Mox20I	TGGCCA	1 cut(s)	638
Mph1103I	ATGCAT	1 cut(s)	886
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	2 cut(s)	486, 891
Msp20I	TGGCCA	1 cut(s)	638
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	8 cut(s)	174, 332, 338, 395, 644, 664, 902, 929
NarI	GGCGCC	1 cut(s)	583
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	1 cut(s)	301
NlaIV	GGNNCC	5 cut(s)	220, 221, 584, 1004, 1120
NmuCI	GTSAC	2 cut(s)	10, 130
NsiI	ATGCAT	1 cut(s)	886
NspV	TTCGAA	1 cut(s)	1096
PluTI	GGCGCC	1 cut(s)	586
PpuMI	RGGWCCY	1 cut(s)	1119
PshBI	ATTAAT	1 cut(s)	891
Psp5II	RGGWCCY	1 cut(s)	1119
PspN4I	GGNNCC	5 cut(s)	220, 221, 584, 1004, 1120
PspOMI	GGGCCC	1 cut(s)	218
PspPI	GGNCC	4 cut(s)	218, 219, 400, 1119
PspPPI	RGGWCCY	1 cut(s)	1119
PsrI	GAACNNNNNNTAC	2 cut(s)	1035, 1067
PstI	CTGCAG	1 cut(s)	571
RsaI	GTAC	2 cut(s)	868, 1004
RsaNI	GTAC	2 cut(s)	867, 1003
SaqAI	TTAA	2 cut(s)	486, 891
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	4 cut(s)	218, 219, 400, 1119
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	863
SfcI	CTRYAG	2 cut(s)	531, 567
SfoI	GGCGCC	1 cut(s)	584
SfuI	TTCGAA	1 cut(s)	1096
SinI	GGWCC	1 cut(s)	1119
SpeI	ACTAGT	1 cut(s)	956
Sse9I	AATT	5 cut(s)	592, 1023, 1035, 1080, 1155
SspDI	GGCGCC	1 cut(s)	582
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	3 cut(s)	957, 990, 1040
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	4 cut(s)	278, 682, 706, 1146
TaqI	TCGA	3 cut(s)	691, 909, 1096
TasI	AATT	5 cut(s)	592, 1023, 1035, 1080, 1155
TauI	GCSGC	7 cut(s)	206, 234, 335, 386, 389, 583, 588
Tru1I	TTAA	2 cut(s)	486, 891
Tru9I	TTAA	2 cut(s)	486, 891
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	2 cut(s)	10, 130
TseI	GCWGC	3 cut(s)	5, 466, 566
Tsp45I	GTSAC	2 cut(s)	10, 130
TspDTI	ATGAA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	1119
VspI	ATTAAT	1 cut(s)	891
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	3 cut(s)	592, 1035, 1155
XbaI	TCTAGA	1 cut(s)	1039
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1013
XspI	CTAG	3 cut(s)	957, 990, 1040
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.