Rh1DG041100

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002218
Physical Location & Seq
Reverse (-)
6532482 .. 6536118
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG041100.1

Sequence Viewer

Length: 1131 bp
ATGGCGGTCGCCACCTTGTCCAACTTCTCCGCTTTCACCACTCGCACATCCTCTCTCTCTTCTTTTTCTTCTTCTTCACCTTTCCCGCGCACCACAAACTTCACTTTCACTACCCTCACCAAACCTCCCAACTCCCTCTCTCTCGCCACGTCACCGCGCCTCCCCCGCTCCTCTTTCGCCACATGTTTCTCCTCCGGCGGCCCACCTTCCTCCGGCGGCGGAGGAGGAGATCACAGCAATGGCGGCGGTGACGGAGAGGGAGGGGAGGACAGAGAGAGGAACAAAAAGGAGGCGGCGATGGCGATTGCCGAGGCGGGAAGGACGGCGGAGAGTCTGCCGAAGGACTTGGCGGCGGCGGTGGAGGCCGGTCGGGTCCCCGGGTTGATTATGAAGAGGTTCTTTGAGCTGGAGAAGTCGGTGGTCTTCCGGTGGCTGCTTCAGTTTGATGGATTCAAGGAGCGGTTGCTGGCCGACGACTTGTTCTTGACCAAAGTTGGCATCGAGTGCGGTGTTGGAATTTTCACCAAGACTGCTGCAGAATTTGAGCGGCGCAGAGAAAAATTTACCAAGGAGCTGGATTTTGTGTTTGCGGATGTGGTGATGGCCATTATAGCTGATTTTATGCTCGTCTGGCTTCCTGCTCCTACTGTTTCACTTCGCAAACCTCTTGTTGTCAGTGCTGGGCGTGTTGCTAAGTTCTTCTATGGCTGTCCTGACAATGCATTTCAGGTTTCTTTGGCTGGAACATCTTACTCAGTCTTACAGAGAATAGGCGCAATATTGAGAAATGGAGCAAAACTATTCGTGGTTGGGACTGGTGCATCTCTGATTGGTACTGGTGTAACAAATGCATTGATTGCTGCAAGAAAAGCTTTGGACAAATCCTTTCTTGGTGAAGCAGAAGATGTTCCCATATTATCAACTAGTGCAGCCTATGGGGTCTATATGGCAGTTTCTAGCAATCTAAGGTACCAAGTTCTCGCTGGAATAATCGAACAACGTATTCTAGAACCCTTGCTACACCAACACAAGCTTGCACTGAGTGCAATTTGCTTTGCTGTTCGAACTGGAAACACATTTTTGGGGTCCTTGATGTGGGTTGATTATGCACGCTGGATTGGAATTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

376

Amino Acids

40.36

Weight (kDa)

9.24

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 153 - 330 4.5e-66 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 969
AccB1I GGYRCC 1 cut(s) 969
AccBSI CCGCTC 3 cut(s) 168, 460, 547
AccII CGCG 2 cut(s) 88, 157
AcoI YGGCCR 2 cut(s) 468, 603
AcsI RAATTY 4 cut(s) 516, 539, 560, 1122
AcuI CTGAAG 1 cut(s) 422
AdeI CACNNNGTG 1 cut(s) 1043
AfaI GTAC 2 cut(s) 835, 971
AfiI CCNNNNNNNGG 2 cut(s) 212, 1095
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 2 cut(s) 454, 1127
AhlI ACTAGT 1 cut(s) 923
AjiI CACGTC 1 cut(s) 150
AluBI AGCT 5 cut(s) 406, 574, 614, 872, 1033
AluI AGCT 5 cut(s) 406, 574, 614, 872, 1033
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 4 cut(s) 199, 363, 468, 603
ApeKI GCWGC 4 cut(s) 433, 533, 860, 929
ApoI RAATTY 4 cut(s) 516, 539, 560, 1122
Asp700I GAANNNNTTC 2 cut(s) 395, 906
Asp718I GGTACC 1 cut(s) 969
AspLEI GCGC 4 cut(s) 90, 159, 552, 776
AspS9I GGNCC 3 cut(s) 200, 373, 1086
AsuC2I CCSGG 2 cut(s) 378, 379
AsuHPI GGTGA 8 cut(s) 28, 69, 109, 144, 260, 514, 610, 905
AsuII TTCGAA 1 cut(s) 1063
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 2 cut(s) 373, 1086
BaeI ACNNNNGTAYC 2 cut(s) 825, 858
BalI TGGCCA 1 cut(s) 605
BanI GGYRCC 1 cut(s) 969
BbsI GAAGAC 1 cut(s) 415
BbvI GCAGC 4 cut(s) 420, 520, 847, 941
BccI CCATC 3 cut(s) 292, 440, 595
BceAI ACGGC 1 cut(s) 339
BcnI CCSGG 2 cut(s) 378, 379
BcuI ACTAGT 1 cut(s) 923
BfaI CTAG 3 cut(s) 924, 957, 1007
BfmI CTRYAG 1 cut(s) 534
Bme1390I CCNGG 2 cut(s) 378, 379
Bme18I GGWCC 2 cut(s) 373, 1086
BmeT110I CYCGRG 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 3 cut(s) 200, 373, 1086
BmiI GGNNCC 4 cut(s) 374, 375, 971, 1087
BmrFI CCNGG 2 cut(s) 378, 379
BmsI GCATC 2 cut(s) 507, 830
BpiI GAAGAC 1 cut(s) 415
BpmI CTGGAG 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 1063
BpuMI CCSGG 2 cut(s) 378, 379
BsaJI CCNNGG 4 cut(s) 309, 376, 377, 567
BsaWI WCCGGW 1 cut(s) 426
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 144, 174
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 1095
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 3 cut(s) 820, 841, 1072
Bse3DI GCAATG 1 cut(s) 244
BseDI CCNNGG 4 cut(s) 309, 376, 377, 567
BseGI GGATG 2 cut(s) 47, 598
BseLI CCNNNNNNNGG 2 cut(s) 212, 1095
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 768, 1031
BseNI ACTGG 3 cut(s) 820, 841, 1072
BseRI GAGGAG 4 cut(s) 160, 181, 237, 240
BseXI GCAGC 4 cut(s) 420, 520, 847, 941
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 1 cut(s) 948
Bsh1236I CGCG 2 cut(s) 88, 157
Bsh1285I CGRYCG 2 cut(s) 9, 370
BshFI GGCC 4 cut(s) 201, 365, 470, 605
BshNI GGYRCC 1 cut(s) 969
BsiEI CGRYCG 2 cut(s) 9, 370
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 5 cut(s) 195, 213, 366, 378, 427
BslFI GGGAC 2 cut(s) 359, 826
BslI CCNNNNNNNGG 2 cut(s) 212, 1095
BsmFI GGGAC 2 cut(s) 359, 826
BsnI GGCC 4 cut(s) 201, 365, 470, 605
BsoBI CYCGRG 1 cut(s) 377
Bsp119I TTCGAA 1 cut(s) 1063
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 4 cut(s) 201, 365, 470, 605
BspCNI CTCAG 2 cut(s) 767, 1032
BspFNI CGCG 2 cut(s) 88, 157
BspLI GGNNCC 4 cut(s) 374, 375, 971, 1087
BspMAI CTGCAG 1 cut(s) 538
BspT104I TTCGAA 1 cut(s) 1063
BspT107I GGYRCC 1 cut(s) 969
BsrBI CCGCTC 3 cut(s) 168, 460, 547
BsrDI GCAATG 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 3 cut(s) 820, 841, 1072
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 4 cut(s) 309, 376, 377, 567
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 567
Bst4CI ACNGT 1 cut(s) 649
Bst6I CTCTTC 2 cut(s) 64, 386
BstAPI GCANNNNNTGC 3 cut(s) 504, 857, 1043
BstBI TTCGAA 1 cut(s) 1063
BstC8I GCNNGC 3 cut(s) 468, 1035, 1111
BstDEI CTNAG 4 cut(s) 693, 754, 965, 1040
BstF5I GGATG 2 cut(s) 47, 598
BstFNI CGCG 2 cut(s) 88, 157
BstHHI GCGC 4 cut(s) 90, 159, 552, 776
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMCI CGRYCG 2 cut(s) 9, 370
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 376, 377
BstSFI CTRYAG 1 cut(s) 534
BstUI CGCG 2 cut(s) 88, 157
BstV1I GCAGC 4 cut(s) 420, 520, 847, 941
BstV2I GAAGAC 1 cut(s) 415
BstXI CCANNNNNNTGG 1 cut(s) 574
BsuRI GGCC 4 cut(s) 201, 365, 470, 605
BtgZI GCGATG 1 cut(s) 311
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 47, 598
BtsIMutI CAGTG 2 cut(s) 682, 1037
Cac8I GCNNGC 3 cut(s) 468, 1035, 1111
CfoI GCGC 4 cut(s) 90, 159, 552, 776
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 3 cut(s) 200, 373, 1086
Cfr9I CCCGGG 1 cut(s) 377
Csp6I GTAC 2 cut(s) 834, 970
CviAII CATG 1 cut(s) 183
CviQI GTAC 2 cut(s) 834, 970
DdeI CTNAG 4 cut(s) 693, 754, 965, 1040
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 1043
EaeI YGGCCR 2 cut(s) 468, 603
Eam1104I CTCTTC 2 cut(s) 64, 386
EarI CTCTTC 2 cut(s) 64, 386
EciI GGCGGA 2 cut(s) 234, 341
Eco130I CCWWGG 1 cut(s) 567
Eco47I GGWCC 2 cut(s) 373, 1086
Eco57I CTGAAG 1 cut(s) 422
Eco88I CYCGRG 1 cut(s) 377
EcoO109I RGGNCCY 2 cut(s) 373, 1086
EcoRI GAATTC 1 cut(s) 1122
EcoT14I CCWWGG 1 cut(s) 567
EcoT22I ATGCAT 2 cut(s) 724, 853
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 1 cut(s) 186
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 856, 888
FaqI GGGAC 2 cut(s) 359, 826
FatI CATG 1 cut(s) 182
FauI CCCGC 3 cut(s) 93, 173, 307
FokI GGATG 2 cut(s) 34, 605
FspBI CTAG 3 cut(s) 924, 957, 1007
GlaI GCGC 4 cut(s) 89, 158, 551, 775
GsaI CCCAGC 1 cut(s) 684
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 4 cut(s) 201, 365, 470, 605
HapII CCGG 5 cut(s) 195, 213, 366, 378, 427
HhaI GCGC 4 cut(s) 90, 159, 552, 776
Hin1II CATG 1 cut(s) 186
Hin6I GCGC 4 cut(s) 88, 157, 550, 774
HinP1I GCGC 4 cut(s) 88, 157, 550, 774
HindIII AAGCTT 2 cut(s) 870, 1031
HinfI GANTC 2 cut(s) 331, 450
HpaII CCGG 5 cut(s) 195, 213, 366, 378, 427
HphI GGTGA 8 cut(s) 28, 69, 109, 144, 260, 514, 610, 905
Hpy188I TCNGA 1 cut(s) 828
Hpy188III TCNNGA 3 cut(s) 484, 713, 1007
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 3 cut(s) 216, 312, 334
HpyCH4III ACNGT 1 cut(s) 649
HpyCH4IV ACGT 2 cut(s) 149, 1000
HpyCH4V TGCA 9 cut(s) 536, 722, 821, 851, 863, 929, 1037, 1046, 1109
HpyF3I CTNAG 4 cut(s) 693, 754, 965, 1040
HpySE526I ACGT 2 cut(s) 149, 1000
Hsp92II CATG 1 cut(s) 186
HspAI GCGC 4 cut(s) 88, 157, 550, 774
KflI GGGWCCC 1 cut(s) 373
KpnI GGTACC 1 cut(s) 973
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 5 cut(s) 173, 457, 571, 646, 791
Lsp1109I GCAGC 4 cut(s) 420, 520, 847, 941
LweI GCATC 2 cut(s) 507, 830
MaeI CTAG 3 cut(s) 924, 957, 1007
MaeII ACGT 2 cut(s) 149, 1000
MaeIII GTNAC 3 cut(s) 150, 248, 841
MalI GATC 1 cut(s) 231
MbiI CCGCTC 3 cut(s) 168, 460, 547
MboI GATC 1 cut(s) 229
MboII GAAGA 8 cut(s) 51, 60, 63, 66, 403, 415, 691, 914
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 5 cut(s) 516, 539, 560, 1047, 1122
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 2 cut(s) 45, 493
Mox20I TGGCCA 1 cut(s) 605
Mph1103I ATGCAT 2 cut(s) 724, 853
MroXI GAANNNNTTC 2 cut(s) 395, 906
MscI TGGCCA 1 cut(s) 605
MslI CAYNNNNRTG 1 cut(s) 237
Msp20I TGGCCA 1 cut(s) 605
MspI CCGG 5 cut(s) 195, 213, 366, 378, 427
MspR9I CCNGG 2 cut(s) 378, 379
MvnI CGCG 2 cut(s) 88, 157
NciI CCSGG 2 cut(s) 378, 379
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 4 cut(s) 374, 375, 971, 1087
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 2 cut(s) 150, 248
NsiI ATGCAT 2 cut(s) 724, 853
NspI RCATGY 1 cut(s) 186
NspV TTCGAA 1 cut(s) 1063
PciI ACATGT 1 cut(s) 182
PdmI GAANNNNTTC 2 cut(s) 395, 906
PfeI GAWTC 1 cut(s) 450
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PpuMI RGGWCCY 2 cut(s) 373, 1086
PscI ACATGT 1 cut(s) 182
Psp5II RGGWCCY 2 cut(s) 373, 1086
PspFI CCCAGC 1 cut(s) 680
PspN4I GGNNCC 4 cut(s) 374, 375, 971, 1087
PspPI GGNCC 3 cut(s) 200, 373, 1086
PspPPI RGGWCCY 2 cut(s) 373, 1086
PsrI GAACNNNNNNTAC 2 cut(s) 1002, 1034
PstI CTGCAG 1 cut(s) 538
RsaI GTAC 2 cut(s) 835, 971
RsaNI GTAC 2 cut(s) 834, 970
RseI CAYNNNNRTG 1 cut(s) 237
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 3 cut(s) 200, 373, 1086
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 2 cut(s) 378, 379
SfaNI GCATC 2 cut(s) 507, 830
SfcI CTRYAG 1 cut(s) 534
SfuI TTCGAA 1 cut(s) 1063
SinI GGWCC 2 cut(s) 373, 1086
SmaI CCCGGG 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 237
SpeI ACTAGT 1 cut(s) 923
Sse9I AATT 5 cut(s) 516, 539, 560, 1047, 1122
SspI AATATT 1 cut(s) 780
SspMI CTAG 3 cut(s) 924, 957, 1007
StyD4I CCNGG 2 cut(s) 376, 377
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 1 cut(s) 649
TaiI ACGT 2 cut(s) 152, 1003
TaqI TCGA 3 cut(s) 501, 993, 1063
TasI AATT 5 cut(s) 516, 539, 560, 1047, 1122
TauI GCSGC 7 cut(s) 201, 219, 246, 296, 353, 356, 550
TfiI GAWTC 1 cut(s) 450
TscAI CASTG 2 cut(s) 682, 1044
TseFI GTSAC 2 cut(s) 150, 248
TseI GCWGC 4 cut(s) 433, 533, 860, 929
Tsp45I GTSAC 2 cut(s) 150, 248
TspDTI ATGAA 1 cut(s) 404
TspGWI ACGGA 1 cut(s) 267
TspMI CCCGGG 1 cut(s) 377
TspRI CASTG 2 cut(s) 682, 1044
VpaK11BI GGWCC 2 cut(s) 373, 1086
XapI RAATTY 4 cut(s) 516, 539, 560, 1122
XbaI TCTAGA 1 cut(s) 1006
XceI RCATGY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 980
XmaI CCCGGG 1 cut(s) 377
XmnI GAANNNNTTC 2 cut(s) 395, 906
XspI CTAG 3 cut(s) 924, 957, 1007
Zsp2I ATGCAT 2 cut(s) 724, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.