Rorug01G0018700

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002218
Physical Location & Seq
Reverse (-)
3105945 .. 3114897
8953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0018700.1

Sequence Viewer

Length: 1368 bp
ATGGGCCGTAGCGGTCTTAACAAGTTCCAACGTACAATCCGCAAATCCATTGAGCTCGACCCTAGCCCAATTATATCTGTTAGCTGTACTTGCTCACGACGGACACTTGGGACTCCTCCCTCCCTCCCTCTGACAACCACCCATCGATCCCAAACACTCCTCACCGCGGCCACCACCTCTAACCCGACCCGGTCCCGAATCCCAGTAATCTTGTTCCGGATTCAGCTGATAGACGCCAAGAACTGGGCTTCAAGTCCCATCCGGGTGTGCGACCGACAACGAGGTAGGTGCAGGATGTCAAGCAGGAACGAAGAAGTTTTGAAGCTTAAAAACAAGATTATTGAATGCCAAGAGGAAACGCTGCGGCTATTGCAGGAGAAACAGGGGTGGCCTGCCAAATCTAATCTTATGGAACAGACAAAAGAAAGAGCTGTAGCTGACTTGACAAGACAATCGACCGAAACATCTGAATTTGAGAAGGAACTCATCGATCTGTACAAGGCCTTGAAGCGTGAGGAGAAGTCTGAAACCAATCTAAAAGATATTTTTGACGCGATGCAAGCTTCGCATGAGGAATATAGGACAGCTATGGAAAAACAGCTGACAGAAGTAGAGTGTTCGTTGGATACTGTAGATAAGAGATTGTCAGTGACGCTAGAAAATCGCGTAGAGATGGAGAAGAGACTAGAAAATCTTAATGTTTTCTGTGAGGCTGTGTATTCTACTCTCAAATCGAAGAAGTCTAACGGTGTCTCTCTTGTCAAAGAAGCTCAGGTTAAGGATTTAACTGAGCAGTTTCCAGCCGCTACACCCCTTGCTTTGGTACTGAAACAGTTCTTGGCAGATCGTAGTCTGGATCAGTCTTATTCTGGTGGCTTGAGTTCCTACTGTTTGGTGAGTAATGCTGGAACACCTCTCGTCGGGCTTAATGTACTACTAATTGTGCGTTTTCCCCAGCATGAGTGTCTTCTTGGCCGACCTATCAACCAATTAATTTCATTTGCCACGTTATATATTTGTCTCGTAAGACTTCGGAGACCTTCTGATGAATTTCTTTATTTTTTTGGGAATGTTTTTGATCCTCGGCAAATGTGTATTTCCGTACAGGGAAAGGGAGTTTATATAAAGAGGGAAAGAGGTTGCAGCATTGACCCCATACACATTCATGATCCCCTTTTTTGGACTAATAATGTGGGACGCAATTGCTTTTGGATACATCAATGCTTGAAGAGGATTGAGCTCTGTGCATTTGGAACCAAAATCGACGATACCAGCTCATTGGCATCAAATGATCATGGGAGACAGAGGGCCGGTGGATGGGACATAAAGAAGTTTGCTGGATTTGCTCTTTCGGAGTCAGGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

455

Amino Acids

51.65

Weight (kDa)

9.06

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AccII CGCG 3 cut(s) 167, 554, 666
AccIII TCCGGA 1 cut(s) 216
AciI CCGC 6 cut(s) 12, 40, 165, 167, 364, 804
AclWI GGATC 4 cut(s) 141, 864, 1073, 1163
AcoI YGGCCR 2 cut(s) 168, 973
AcsI RAATTY 2 cut(s) 470, 1049
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 6 cut(s) 34, 88, 497, 825, 933, 1104
AfiI CCNNNNNNNGG 6 cut(s) 166, 243, 820, 920, 1179, 1317
AgsI TTSAA 5 cut(s) 252, 322, 344, 508, 1228
AjuI GAANNNNNNNTTGG 2 cut(s) 821, 853
Alw21I GWGCWC 2 cut(s) 57, 1242
Alw26I GTCTC 5 cut(s) 676, 757, 1025, 1030, 1294
AlwI GGATC 4 cut(s) 141, 864, 1073, 1163
Aor13HI TCCGGA 1 cut(s) 216
AoxI GGCC 6 cut(s) 4, 168, 389, 501, 973, 1308
ApeKI GCWGC 2 cut(s) 361, 1143
ApoI RAATTY 2 cut(s) 470, 1049
AseI ATTAAT 1 cut(s) 992
Asp700I GAANNNNTTC 1 cut(s) 833
AspS9I GGNCC 3 cut(s) 4, 192, 1308
AsuC2I CCSGG 2 cut(s) 190, 263
AsuHPI GGTGA 2 cut(s) 154, 907
AvaII GGWCC 1 cut(s) 192
BanII GRGCYC 2 cut(s) 57, 1242
BbsI GAAGAC 1 cut(s) 959
Bbv12I GWGCWC 2 cut(s) 57, 1242
BbvI GCAGC 2 cut(s) 348, 1155
BccI CCATC 4 cut(s) 150, 266, 667, 1311
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciVI GTATCC 2 cut(s) 619, 1206
BclI TGATCA 1 cut(s) 1291
BcnI CCSGG 2 cut(s) 190, 263
BcoDI GTCTC 5 cut(s) 676, 757, 1025, 1030, 1294
BfaI CTAG 3 cut(s) 63, 656, 686
BfmI CTRYAG 2 cut(s) 432, 630
BfuI GTATCC 2 cut(s) 619, 1206
BisI GCNGC 5 cut(s) 168, 362, 365, 804, 1144
BlsI GCNGC 5 cut(s) 169, 363, 366, 805, 1145
Bme1390I CCNGG 2 cut(s) 190, 263
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 3 cut(s) 4, 192, 1308
BmiI GGNNCC 2 cut(s) 194, 1255
BmrFI CCNGG 2 cut(s) 190, 263
BmrI ACTGGG 2 cut(s) 197, 253
BmsI GCATC 2 cut(s) 546, 1292
BmuI ACTGGG 2 cut(s) 197, 253
BpiI GAAGAC 1 cut(s) 959
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 898
BpuMI CCSGG 2 cut(s) 190, 263
Bsa29I ATCGAT 2 cut(s) 145, 489
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 1030
BsaJI CCNNGG 2 cut(s) 165, 1082
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 6 cut(s) 166, 243, 820, 920, 1179, 1317
Bse118I RCCGGY 1 cut(s) 1310
Bse1I ACTGG 2 cut(s) 203, 248
BseAI TCCGGA 1 cut(s) 216
BseCI ATCGAT 2 cut(s) 145, 489
BseDI CCNNGG 2 cut(s) 165, 1082
BseGI GGATG 3 cut(s) 258, 300, 1322
BseLI CCNNNNNNNGG 6 cut(s) 166, 243, 820, 920, 1179, 1317
BseMII CTCAG 2 cut(s) 780, 785
BseNI ACTGG 2 cut(s) 203, 248
BseRI GAGGAG 3 cut(s) 105, 149, 530
BseXI GCAGC 2 cut(s) 348, 1155
BseYI CCCAGC 1 cut(s) 954
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 3 cut(s) 167, 554, 666
Bsh1285I CGRYCG 2 cut(s) 274, 459
BshFI GGCC 6 cut(s) 6, 170, 391, 503, 975, 1310
BshVI ATCGAT 2 cut(s) 145, 489
BsiEI CGRYCG 2 cut(s) 274, 459
BsiHKAI GWGCWC 2 cut(s) 57, 1242
BsiSI CCGG 4 cut(s) 190, 217, 262, 1311
BslFI GGGAC 5 cut(s) 124, 178, 240, 1209, 1334
BslI CCNNNNNNNGG 6 cut(s) 166, 243, 820, 920, 1179, 1317
BsmAI GTCTC 5 cut(s) 676, 757, 1025, 1030, 1294
BsmFI GGGAC 5 cut(s) 124, 178, 240, 1209, 1334
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 6 cut(s) 6, 170, 391, 503, 975, 1310
Bso31I GGTCTC 1 cut(s) 1030
Bsp1286I GDGCHC 2 cut(s) 57, 1242
Bsp13I TCCGGA 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 7 cut(s) 146, 490, 844, 856, 1078, 1168, 1291
BspACI CCGC 6 cut(s) 12, 40, 165, 167, 364, 804
BspANI GGCC 6 cut(s) 6, 170, 391, 503, 975, 1310
BspCNI CTCAG 2 cut(s) 781, 784
BspDI ATCGAT 2 cut(s) 145, 489
BspEI TCCGGA 1 cut(s) 216
BspFNI CGCG 3 cut(s) 167, 554, 666
BspHI TCATGA 1 cut(s) 1165
BspLI GGNNCC 2 cut(s) 194, 1255
BspPI GGATC 4 cut(s) 141, 864, 1073, 1163
BspTNI GGTCTC 1 cut(s) 1030
BsrFI RCCGGY 1 cut(s) 1310
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 2 cut(s) 203, 248
BssAI RCCGGY 1 cut(s) 1310
BssECI CCNNGG 2 cut(s) 165, 1082
BssMI GATC 7 cut(s) 146, 490, 844, 856, 1078, 1168, 1291
BssNI GRCGYC 1 cut(s) 234
Bst4CI ACNGT 4 cut(s) 631, 749, 834, 890
Bst6I CTCTTC 2 cut(s) 674, 1223
BstACI GRCGYC 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 495
BstC8I GCNNGC 2 cut(s) 393, 561
BstDEI CTNAG 2 cut(s) 771, 789
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 258, 300, 1322
BstFNI CGCG 3 cut(s) 167, 554, 666
BstKTI GATC 7 cut(s) 149, 493, 847, 859, 1081, 1171, 1294
BstMAI GTCTC 5 cut(s) 676, 757, 1025, 1030, 1294
BstMBI GATC 7 cut(s) 146, 490, 844, 856, 1078, 1168, 1291
BstMCI CGRYCG 2 cut(s) 274, 459
BstMWI GCNNNNNNNGC 5 cut(s) 90, 370, 560, 565, 1343
BstSCI CCNGG 2 cut(s) 188, 261
BstSFI CTRYAG 2 cut(s) 432, 630
BstUI CGCG 3 cut(s) 167, 554, 666
BstV1I GCAGC 2 cut(s) 348, 1155
BstV2I GAAGAC 1 cut(s) 959
BstXI CCANNNNNNTGG 1 cut(s) 1279
Bsu15I ATCGAT 2 cut(s) 145, 489
BsuI GTATCC 2 cut(s) 619, 1206
BsuRI GGCC 6 cut(s) 6, 170, 391, 503, 975, 1310
BsuTUI ATCGAT 2 cut(s) 145, 489
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 569
BtsCI GGATG 3 cut(s) 258, 300, 1322
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 2 cut(s) 393, 561
CciI TCATGA 1 cut(s) 1165
Cfr10I RCCGGY 1 cut(s) 1310
Cfr13I GGNCC 3 cut(s) 4, 192, 1308
Cfr42I CCGCGG 1 cut(s) 168
ClaI ATCGAT 2 cut(s) 145, 489
CseI GACGC 4 cut(s) 242, 560, 661, 1206
Csp6I GTAC 6 cut(s) 33, 87, 496, 824, 932, 1103
CviAII CATG 4 cut(s) 569, 959, 1166, 1295
CviQI GTAC 6 cut(s) 33, 87, 496, 824, 932, 1103
DdeI CTNAG 2 cut(s) 771, 789
DpnI GATC 7 cut(s) 148, 492, 846, 858, 1080, 1170, 1293
DpnII GATC 7 cut(s) 146, 490, 844, 856, 1078, 1168, 1291
EaeI YGGCCR 2 cut(s) 168, 973
Eam1104I CTCTTC 2 cut(s) 674, 1223
EarI CTCTTC 2 cut(s) 674, 1223
Ecl136II GAGCTC 2 cut(s) 55, 1240
Eco147I AGGCCT 1 cut(s) 503
Eco24I GRGCYC 2 cut(s) 57, 1242
Eco31I GGTCTC 1 cut(s) 1030
Eco47I GGWCC 1 cut(s) 192
Eco53kI GAGCTC 2 cut(s) 55, 1240
EcoICRI GAGCTC 2 cut(s) 55, 1240
EcoT38I GRGCYC 2 cut(s) 57, 1242
FaeI CATG 4 cut(s) 572, 962, 1169, 1298
FaqI GGGAC 5 cut(s) 124, 178, 240, 1209, 1334
FatI CATG 4 cut(s) 568, 958, 1165, 1294
FbaI TGATCA 1 cut(s) 1291
Fnu4HI GCNGC 5 cut(s) 168, 362, 365, 804, 1144
FokI GGATG 3 cut(s) 245, 307, 1329
FriOI GRGCYC 2 cut(s) 57, 1242
Fsp4HI GCNGC 5 cut(s) 168, 362, 365, 804, 1144
FspBI CTAG 3 cut(s) 63, 656, 686
GluI GCNGC 5 cut(s) 168, 362, 365, 804, 1144
GsaI CCCAGC 1 cut(s) 958
HaeIII GGCC 6 cut(s) 6, 170, 391, 503, 975, 1310
HapII CCGG 4 cut(s) 190, 217, 262, 1311
HgaI GACGC 4 cut(s) 242, 560, 661, 1206
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 4 cut(s) 572, 962, 1169, 1298
HindIII AAGCTT 2 cut(s) 323, 561
HinfI GANTC 4 cut(s) 112, 198, 220, 1355
HpaII CCGG 4 cut(s) 190, 217, 262, 1311
HphI GGTGA 2 cut(s) 154, 907
Hpy188I TCNGA 6 cut(s) 132, 469, 526, 1035, 1045, 1354
Hpy188III TCNNGA 5 cut(s) 96, 195, 217, 854, 1166
Hpy99I CGWCG 3 cut(s) 102, 923, 1268
HpyAV CCTTC 2 cut(s) 472, 1050
HpyCH4III ACNGT 4 cut(s) 631, 749, 834, 890
HpyCH4IV ACGT 2 cut(s) 31, 1007
HpyCH4V TGCA 5 cut(s) 291, 373, 559, 1143, 1247
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 370, 560, 565, 1343
HpyF3I CTNAG 2 cut(s) 771, 789
HpySE526I ACGT 2 cut(s) 31, 1007
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 4 cut(s) 572, 962, 1169, 1298
Kpn2I TCCGGA 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 1291
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 7 cut(s) 146, 490, 844, 856, 1078, 1168, 1291
Lsp1109I GCAGC 2 cut(s) 348, 1155
LweI GCATC 2 cut(s) 546, 1292
MaeI CTAG 3 cut(s) 63, 656, 686
MaeII ACGT 2 cut(s) 31, 1007
MaeIII GTNAC 1 cut(s) 649
MalI GATC 7 cut(s) 148, 492, 846, 858, 1080, 1170, 1293
MboI GATC 7 cut(s) 146, 490, 844, 856, 1078, 1168, 1291
MboII GAAGA 5 cut(s) 323, 691, 748, 959, 1240
MfeI CAATTG 1 cut(s) 1201
MhlI GDGCHC 2 cut(s) 57, 1242
MluCI AATT 7 cut(s) 69, 470, 939, 989, 993, 1049, 1201
MlyI GAGTC 2 cut(s) 106, 1364
MmeI TCCRAC 2 cut(s) 52, 603
MroI TCCGGA 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 833
MseI TTAA 7 cut(s) 18, 327, 696, 777, 785, 927, 992
MslI CAYNNNNRTG 2 cut(s) 263, 1164
MspA1I CMGCKG 3 cut(s) 167, 226, 601
MspI CCGG 4 cut(s) 190, 217, 262, 1311
MspR9I CCNGG 2 cut(s) 190, 263
MunI CAATTG 1 cut(s) 1201
Mva1269I GAATGC 1 cut(s) 350
MvnI CGCG 3 cut(s) 167, 554, 666
MwoI GCNNNNNNNGC 5 cut(s) 90, 370, 560, 565, 1343
NciI CCSGG 2 cut(s) 190, 263
NdeII GATC 7 cut(s) 146, 490, 844, 856, 1078, 1168, 1291
NlaIII CATG 4 cut(s) 572, 962, 1169, 1298
NlaIV GGNNCC 2 cut(s) 194, 1255
NmeAIII GCCGAG 1 cut(s) 1063
NmuCI GTSAC 1 cut(s) 649
PagI TCATGA 1 cut(s) 1165
PceI AGGCCT 1 cut(s) 503
PctI GAATGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 2 cut(s) 198, 220
PflFI GACNNNGTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 5 cut(s) 169, 363, 366, 805, 1145
PleI GAGTC 2 cut(s) 106, 1363
PpsI GAGTC 2 cut(s) 106, 1363
PshBI ATTAAT 1 cut(s) 992
Psp124BI GAGCTC 2 cut(s) 57, 1242
PspFI CCCAGC 1 cut(s) 954
PspN4I GGNNCC 2 cut(s) 194, 1255
PspPI GGNCC 3 cut(s) 4, 192, 1308
PsyI GACNNNGTC 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 226, 601
RsaI GTAC 6 cut(s) 34, 88, 497, 825, 933, 1104
RsaNI GTAC 6 cut(s) 33, 87, 496, 824, 932, 1103
RseI CAYNNNNRTG 2 cut(s) 263, 1164
SacI GAGCTC 2 cut(s) 57, 1242
SacII CCGCGG 1 cut(s) 168
SaqAI TTAA 7 cut(s) 18, 327, 696, 777, 785, 927, 992
SatI GCNGC 5 cut(s) 168, 362, 365, 804, 1144
Sau3AI GATC 7 cut(s) 146, 490, 844, 856, 1078, 1168, 1291
Sau96I GGNCC 3 cut(s) 4, 192, 1308
SchI GAGTC 2 cut(s) 106, 1364
ScrFI CCNGG 2 cut(s) 190, 263
SduI GDGCHC 2 cut(s) 57, 1242
SfaNI GCATC 2 cut(s) 546, 1292
SfcI CTRYAG 2 cut(s) 432, 630
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 2 cut(s) 263, 1164
SmlI CTYRAG 1 cut(s) 877
SmoI CTYRAG 1 cut(s) 877
Sse9I AATT 7 cut(s) 69, 470, 939, 989, 993, 1049, 1201
SseBI AGGCCT 1 cut(s) 503
SsiI CCGC 6 cut(s) 12, 40, 165, 167, 364, 804
SspMI CTAG 3 cut(s) 63, 656, 686
SstI GAGCTC 2 cut(s) 57, 1242
StuI AGGCCT 1 cut(s) 503
StyD4I CCNGG 2 cut(s) 188, 261
TaaI ACNGT 4 cut(s) 631, 749, 834, 890
TaiI ACGT 2 cut(s) 34, 1010
TaqI TCGA 6 cut(s) 57, 145, 455, 489, 734, 1263
TaqII GACCGA 2 cut(s) 288, 473
TasI AATT 7 cut(s) 69, 470, 939, 989, 993, 1049, 1201
TatI WGTACW 3 cut(s) 86, 495, 931
TauI GCSGC 3 cut(s) 170, 367, 806
TfiI GAWTC 2 cut(s) 198, 220
Tru1I TTAA 7 cut(s) 18, 327, 696, 777, 785, 927, 992
Tru9I TTAA 7 cut(s) 18, 327, 696, 777, 785, 927, 992
TscAI CASTG 1 cut(s) 654
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 2 cut(s) 361, 1143
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 987, 1062, 1154
TspGWI ACGGA 2 cut(s) 115, 1090
TspRI CASTG 1 cut(s) 654
Tth111I GACNNNGTC 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 192
VspI ATTAAT 1 cut(s) 992
XapI RAATTY 2 cut(s) 470, 1049
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 3 cut(s) 63, 656, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.