Rroxscaffold_1G00028580

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002218
Physical Location & Seq
Forward (+)
36425379 .. 36429796
4418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028580.1

Sequence Viewer

Length: 1230 bp
ATGGCAATCGCCTTCTGCTTCACTCCCTCCTCCTCCTCCTCCTCCGCCTCCAAGTTCAATCCGCACCGTCCGATTCCGTCTCTCTCCGCCTCTCCCGTCGTCCATCTCCGCCTCAGCGTGTCCCCGCCCTCTCTGGCGCACCGCGGCCGCCAGTTCCGGAGAGTGCTGTTCGCCGCCGGGGGCGGAGACGGGGGATTTGGCGGCGGAGGATACTCCGGAAGAGGCGGCGGCGGGGATCACGGTGGCGAGGACAATGCCGGCGGGAAAAACAAGGTGGAGGCCCTGATGGTGTTGGAAGGAGTCCGGAGTCGGGGGTTGGAGAGCGGGGGTTGGAGGACTTGGCTTGCGGCGATCGAGGACGGGCGGATCCCCGGCGCGGTTGTGGATAAGTATTTTGAGCTGGAGAAGAACGGCTGCTTTTCGTGGCTGCTGCAGTTTGCTGGGTTTAGGGAGCGTTTGTTGGCTGAACGGATGCTTTTCTTGTTTAAGGTCTTCATGGAGTGCGGTGTTGGTGTTTTCAGCCAAGGTCTCTTTGATGATCTTTTCTTGTGTCACTTCCAAATCATGGATGCCTTGTCTATTCTTCATTTCTTATCCAAGGTGCAATCAATTTTGGATTCTGTTTCGTTTTGTAGACTGCTGCAGAGTACCAGAAACGCCAAGAAAACTTTTTCAATGATGCTCGAAGTTGTGTTTGCAGATGTGGTAATGGCCATAATTGTGAGATTCTCATATGCTTGTACTGGATCTTCCTGCCCCAACTGTTTCTCTTCGACCACCAGTTGCACTCAGCGCAGGGAGATCACTTCACCAGAAAGGGTTTCCATGGTTGCCCTGATAATGCATTCCAGATCTGCTATTAGTTCCTGGAACATCATACTCCTTATTATCAGAGGATTGGTGCTTAGAGTCTCCTCTTTTAATGATATAGCACCCTCTGTTGGCACAACTGTTACAAATGCCTTGATCAATGCAAAGAAGGCTGTTGGTAGCTCCGCAGAGGATGAAGCTGAGCATGTACCTATAGTATCCACTAGCCTTGCATACGGTGTCTATATGGCAGTTTCTAGCAATCTCAGGTACCAAGTATTGGCTGGTGTTATTGAACAAAGGATGTTGGAGCCACTACTACATCAACACAAGCTAATGCTAAGCGCAGTGGGTGGACTATGCTCGTTTAATCGGGATTCAGAAGGCCCATTAGTTATACAATGGGTGCGCACTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

409

Amino Acids

44.41

Weight (kDa)

8.93

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 198 - 367 2.9e-18 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1220
Acc65I GGTACC 1 cut(s) 1080
AccB1I GGYRCC 1 cut(s) 1080
AccB7I CCANNNNNTGG 2 cut(s) 565, 1090
AccBSI CCGCTC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 634
AccII CGCG 2 cut(s) 144, 377
AccIII TCCGGA 3 cut(s) 156, 215, 303
AclWI GGATC 4 cut(s) 243, 361, 374, 754
AcoI YGGCCR 2 cut(s) 145, 711
AfaI GTAC 4 cut(s) 649, 742, 1020, 1082
AfiI CCNNNNNNNGG 5 cut(s) 310, 376, 565, 941, 1090
AgsI TTSAA 3 cut(s) 58, 675, 1106
AjnI CCWGG 1 cut(s) 866
AluBI AGCT 4 cut(s) 400, 993, 1010, 1144
AluI AGCT 4 cut(s) 400, 993, 1010, 1144
Alw26I GTCTC 4 cut(s) 84, 180, 533, 916
AlwI GGATC 4 cut(s) 243, 361, 374, 754
Aor13HI TCCGGA 3 cut(s) 156, 215, 303
AoxI GGCC 4 cut(s) 145, 279, 711, 1195
ApeKI GCWGC 4 cut(s) 414, 427, 430, 640
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp718I GGTACC 1 cut(s) 1080
AspLEI GCGC 5 cut(s) 139, 377, 795, 1157, 1221
AspS9I GGNCC 2 cut(s) 280, 1196
AsuC2I CCSGG 2 cut(s) 178, 372
AsuHPI GGTGA 1 cut(s) 801
BalI TGGCCA 1 cut(s) 713
BamHI GGATCC 1 cut(s) 366
BanI GGYRCC 1 cut(s) 1080
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
BbsI GAAGAC 1 cut(s) 484
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 4 cut(s) 401, 414, 417, 627
BccI CCATC 2 cut(s) 111, 280
BceAI ACGGC 1 cut(s) 427
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 1 cut(s) 868
BciVI GTATCC 2 cut(s) 203, 1039
BclI TGATCA 1 cut(s) 966
BcnI CCSGG 2 cut(s) 178, 372
BcoDI GTCTC 4 cut(s) 84, 180, 533, 916
BfaI CTAG 2 cut(s) 1035, 1068
BfmI CTRYAG 3 cut(s) 431, 641, 1023
BfuI GTATCC 2 cut(s) 203, 1039
BglII AGATCT 1 cut(s) 851
BlpI GCTNAGC 2 cut(s) 1011, 1151
Bme1390I CCNGG 3 cut(s) 178, 372, 868
BmgT120I GGNCC 2 cut(s) 280, 1196
BmiI GGNNCC 3 cut(s) 368, 1082, 1122
BmrFI CCNGG 3 cut(s) 178, 372, 868
BmsI GCATC 3 cut(s) 462, 559, 669
BpiI GAAGAC 1 cut(s) 484
BpmI CTGGAG 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 113
Bpu1102I GCTNAGC 2 cut(s) 1011, 1151
BpuMI CCSGG 2 cut(s) 178, 372
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 6 cut(s) 142, 177, 370, 523, 597, 825
BsaWI WCCGGW 3 cut(s) 156, 215, 303
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 5 cut(s) 310, 376, 565, 941, 1090
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 3 cut(s) 151, 748, 780
BseAI TCCGGA 3 cut(s) 156, 215, 303
BseBI CCWGG 1 cut(s) 868
BseDI CCNNGG 6 cut(s) 142, 177, 370, 523, 597, 825
BseGI GGATG 4 cut(s) 477, 574, 1009, 1119
BseLI CCNNNNNNNGG 5 cut(s) 310, 376, 565, 941, 1090
BseMII CTCAG 4 cut(s) 127, 803, 1002, 1090
BseNI ACTGG 3 cut(s) 151, 748, 780
BseRI GAGGAG 6 cut(s) 19, 22, 25, 28, 31, 904
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 4 cut(s) 401, 414, 417, 627
BseYI CCCAGC 1 cut(s) 440
Bsh1236I CGCG 2 cut(s) 144, 377
Bsh1285I CGRYCG 2 cut(s) 148, 354
BshFI GGCC 4 cut(s) 147, 281, 713, 1197
BshNI GGYRCC 1 cut(s) 1080
BsiEI CGRYCG 2 cut(s) 148, 354
BsiSI CCGG 6 cut(s) 157, 177, 216, 258, 304, 372
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 5 cut(s) 310, 376, 565, 941, 1090
BsmAI GTCTC 4 cut(s) 84, 180, 533, 916
BsmBI CGTCTC 2 cut(s) 84, 180
BsmFI GGGAC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 844
BsnI GGCC 4 cut(s) 147, 281, 713, 1197
Bso31I GGTCTC 1 cut(s) 533
Bsp13I TCCGGA 3 cut(s) 156, 215, 303
Bsp143I GATC 8 cut(s) 235, 351, 366, 538, 746, 801, 851, 966
Bsp1720I GCTNAGC 2 cut(s) 1011, 1151
Bsp19I CCATGG 1 cut(s) 825
BspANI GGCC 4 cut(s) 147, 281, 713, 1197
BspCNI CTCAG 4 cut(s) 126, 802, 1003, 1089
BspEI TCCGGA 3 cut(s) 156, 215, 303
BspFNI CGCG 2 cut(s) 144, 377
BspLI GGNNCC 3 cut(s) 368, 1082, 1122
BspMAI CTGCAG 2 cut(s) 435, 645
BspPI GGATC 4 cut(s) 243, 361, 374, 754
BspT107I GGYRCC 1 cut(s) 1080
BspTNI GGTCTC 1 cut(s) 533
BsrBI CCGCTC 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 3 cut(s) 151, 748, 780
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 6 cut(s) 142, 177, 370, 523, 597, 825
BssMI GATC 8 cut(s) 235, 351, 366, 538, 746, 801, 851, 966
BssT1I CCWWGG 3 cut(s) 523, 597, 825
Bst2UI CCWGG 1 cut(s) 868
Bst4CI ACNGT 5 cut(s) 68, 242, 764, 952, 1049
Bst6I CTCTTC 2 cut(s) 214, 775
BstC8I GCNNGC 2 cut(s) 259, 345
BstDEI CTNAG 6 cut(s) 113, 789, 905, 1011, 1076, 1151
BstDSI CCRYGG 2 cut(s) 142, 825
BstF5I GGATG 4 cut(s) 477, 574, 1009, 1119
BstFNI CGCG 2 cut(s) 144, 377
BstHHI GCGC 5 cut(s) 139, 377, 795, 1157, 1221
BstKTI GATC 8 cut(s) 238, 354, 369, 541, 749, 804, 854, 969
BstMAI GTCTC 4 cut(s) 84, 180, 533, 916
BstMBI GATC 8 cut(s) 235, 351, 366, 538, 746, 801, 851, 966
BstMCI CGRYCG 2 cut(s) 148, 354
BstMWI GCNNNNNNNGC 2 cut(s) 792, 980
BstNI CCWGG 1 cut(s) 868
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 3 cut(s) 176, 370, 866
BstSFI CTRYAG 3 cut(s) 431, 641, 1023
BstUI CGCG 2 cut(s) 144, 377
BstV1I GCAGC 4 cut(s) 401, 414, 417, 627
BstV2I GAAGAC 1 cut(s) 484
BstX2I RGATCY 3 cut(s) 366, 746, 851
BstYI RGATCY 3 cut(s) 366, 746, 851
BstZI CGGCCG 1 cut(s) 145
BsuI GTATCC 2 cut(s) 203, 1039
BsuRI GGCC 4 cut(s) 147, 281, 713, 1197
BtgI CCRYGG 2 cut(s) 142, 825
BtsCI GGATG 4 cut(s) 477, 574, 1009, 1119
BtsI GCAGTG 1 cut(s) 1164
BtsIMutI CAGTG 1 cut(s) 1164
Cac8I GCNNGC 2 cut(s) 259, 345
CciNI GCGGCCGC 1 cut(s) 145
CfoI GCGC 5 cut(s) 139, 377, 795, 1157, 1221
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 280, 1196
Cfr42I CCGCGG 1 cut(s) 145
Csp6I GTAC 4 cut(s) 648, 741, 1019, 1081
CspCI CAANNNNNGTGG 2 cut(s) 1021, 1056
CviAII CATG 4 cut(s) 496, 565, 826, 1016
CviQI GTAC 4 cut(s) 648, 741, 1019, 1081
DdeI CTNAG 6 cut(s) 113, 789, 905, 1011, 1076, 1151
DpnI GATC 8 cut(s) 237, 353, 368, 540, 748, 803, 853, 968
DpnII GATC 8 cut(s) 235, 351, 366, 538, 746, 801, 851, 966
EaeI YGGCCR 2 cut(s) 145, 711
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 214, 775
EarI CTCTTC 2 cut(s) 214, 775
EciI GGCGGA 6 cut(s) 34, 76, 98, 198, 219, 379
EclXI CGGCCG 1 cut(s) 145
Eco130I CCWWGG 3 cut(s) 523, 597, 825
Eco31I GGTCTC 1 cut(s) 533
Eco52I CGGCCG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 866
EcoT14I CCWWGG 3 cut(s) 523, 597, 825
EcoT22I ATGCAT 1 cut(s) 846
ErhI CCWWGG 3 cut(s) 523, 597, 825
Esp3I CGTCTC 2 cut(s) 84, 180
FaeI CATG 4 cut(s) 499, 568, 829, 1019
FaqI GGGAC 1 cut(s) 106
FatI CATG 4 cut(s) 495, 564, 825, 1015
FauI CCCGC 4 cut(s) 132, 224, 254, 317
FauNDI CATATG 1 cut(s) 733
FbaI TGATCA 1 cut(s) 966
FblI GTMKAC 1 cut(s) 634
FokI GGATG 4 cut(s) 484, 581, 1016, 1126
FspAI RTGCGCAY 1 cut(s) 1220
FspBI CTAG 2 cut(s) 1035, 1068
FspI TGCGCA 1 cut(s) 1220
GlaI GCGC 5 cut(s) 138, 376, 794, 1156, 1220
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 4 cut(s) 147, 281, 713, 1197
HapII CCGG 6 cut(s) 157, 177, 216, 258, 304, 372
HhaI GCGC 5 cut(s) 139, 377, 795, 1157, 1221
Hin1II CATG 4 cut(s) 499, 568, 829, 1019
Hin6I GCGC 5 cut(s) 137, 375, 793, 1155, 1219
HinP1I GCGC 5 cut(s) 137, 375, 793, 1155, 1219
HinfI GANTC 7 cut(s) 73, 300, 307, 617, 726, 909, 1187
HpaII CCGG 6 cut(s) 157, 177, 216, 258, 304, 372
HphI GGTGA 1 cut(s) 801
Hpy166II GTNNAC 2 cut(s) 635, 1166
Hpy188I TCNGA 3 cut(s) 72, 893, 1192
Hpy188III TCNNGA 5 cut(s) 157, 216, 304, 849, 1184
Hpy8I GTNNAC 2 cut(s) 635, 1166
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 4 cut(s) 22, 290, 973, 1187
HpyCH4III ACNGT 5 cut(s) 68, 242, 764, 952, 1049
HpyCH4V TGCA 8 cut(s) 433, 604, 643, 698, 786, 844, 974, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 792, 980
HpyF3I CTNAG 6 cut(s) 113, 789, 905, 1011, 1076, 1151
Hsp92II CATG 4 cut(s) 499, 568, 829, 1019
HspAI GCGC 5 cut(s) 137, 375, 793, 1155, 1219
Kpn2I TCCGGA 3 cut(s) 156, 215, 303
KpnI GGTACC 1 cut(s) 1084
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 966
KspI CCGCGG 1 cut(s) 145
Kzo9I GATC 8 cut(s) 235, 351, 366, 538, 746, 801, 851, 966
LmnI GCTCC 3 cut(s) 451, 998, 1120
Lsp1109I GCAGC 4 cut(s) 401, 414, 417, 627
LweI GCATC 3 cut(s) 462, 559, 669
MaeI CTAG 2 cut(s) 1035, 1068
MaeIII GTNAC 2 cut(s) 551, 952
MalI GATC 8 cut(s) 237, 353, 368, 540, 748, 803, 853, 968
MbiI CCGCTC 1 cut(s) 324
MboI GATC 8 cut(s) 235, 351, 366, 538, 746, 801, 851, 966
MboII GAAGA 6 cut(s) 231, 418, 484, 575, 741, 762
MflI RGATCY 3 cut(s) 366, 746, 851
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 2 cut(s) 609, 717
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 3 cut(s) 309, 316, 918
MmeI TCCRAC 4 cut(s) 273, 297, 311, 1098
Mox20I TGGCCA 1 cut(s) 713
Mph1103I ATGCAT 1 cut(s) 846
MroI TCCGGA 3 cut(s) 156, 215, 303
MroNI GCCGGC 1 cut(s) 257
MscI TGGCCA 1 cut(s) 713
MseI TTAA 3 cut(s) 486, 921, 1179
MslI CAYNNNNRTG 1 cut(s) 719
Msp20I TGGCCA 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 6 cut(s) 157, 177, 216, 258, 304, 372
MspR9I CCNGG 3 cut(s) 178, 372, 868
Mva1269I GAATGC 1 cut(s) 844
MvaI CCWGG 1 cut(s) 868
MvnI CGCG 2 cut(s) 144, 377
MwoI GCNNNNNNNGC 2 cut(s) 792, 980
NaeI GCCGGC 1 cut(s) 259
NciI CCSGG 2 cut(s) 178, 372
NcoI CCATGG 1 cut(s) 825
NdeI CATATG 1 cut(s) 733
NdeII GATC 8 cut(s) 235, 351, 366, 538, 746, 801, 851, 966
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 4 cut(s) 499, 568, 829, 1019
NlaIV GGNNCC 3 cut(s) 368, 1082, 1122
NmuCI GTSAC 1 cut(s) 551
NotI GCGGCCGC 1 cut(s) 145
NsbI TGCGCA 1 cut(s) 1220
NsiI ATGCAT 1 cut(s) 846
NspI RCATGY 1 cut(s) 1019
PctI GAATGC 1 cut(s) 844
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 4 cut(s) 73, 617, 726, 1187
PflMI CCANNNNNTGG 2 cut(s) 565, 1090
PfoI TCCNGGA 1 cut(s) 866
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 3 cut(s) 308, 315, 917
PpsI GAGTC 3 cut(s) 308, 315, 917
Psp6I CCWGG 1 cut(s) 866
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 866
PspN4I GGNNCC 3 cut(s) 368, 1082, 1122
PspPI GGNCC 2 cut(s) 280, 1196
PstI CTGCAG 2 cut(s) 435, 645
PsuI RGATCY 3 cut(s) 366, 746, 851
PvuI CGATCG 1 cut(s) 354
RsaI GTAC 4 cut(s) 649, 742, 1020, 1082
RsaNI GTAC 4 cut(s) 648, 741, 1019, 1081
RseI CAYNNNNRTG 1 cut(s) 719
SacII CCGCGG 1 cut(s) 145
SaqAI TTAA 3 cut(s) 486, 921, 1179
Sau3AI GATC 8 cut(s) 235, 351, 366, 538, 746, 801, 851, 966
Sau96I GGNCC 2 cut(s) 280, 1196
SchI GAGTC 3 cut(s) 309, 316, 918
ScrFI CCNGG 3 cut(s) 178, 372, 868
SfaNI GCATC 3 cut(s) 462, 559, 669
SfcI CTRYAG 3 cut(s) 431, 641, 1023
Sfr303I CCGCGG 1 cut(s) 145
SgrBI CCGCGG 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 719
Sse9I AATT 2 cut(s) 609, 717
SspMI CTAG 2 cut(s) 1035, 1068
StyD4I CCNGG 3 cut(s) 176, 370, 866
StyI CCWWGG 3 cut(s) 523, 597, 825
TaaI ACNGT 5 cut(s) 68, 242, 764, 952, 1049
TaqI TCGA 3 cut(s) 354, 684, 773
TasI AATT 2 cut(s) 609, 717
TatI WGTACW 1 cut(s) 740
TauI GCSGC 7 cut(s) 147, 150, 176, 204, 228, 231, 350
TfiI GAWTC 4 cut(s) 73, 617, 726, 1187
Tru1I TTAA 3 cut(s) 486, 921, 1179
Tru9I TTAA 3 cut(s) 486, 921, 1179
TscAI CASTG 1 cut(s) 1164
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 4 cut(s) 414, 427, 430, 640
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 3 cut(s) 484, 575, 1020
TspGWI ACGGA 2 cut(s) 66, 484
TspRI CASTG 1 cut(s) 1164
Van91I CCANNNNNTGG 2 cut(s) 565, 1090
XceI RCATGY 1 cut(s) 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 1091
XmiI GTMKAC 1 cut(s) 634
XspI CTAG 2 cut(s) 1035, 1068
Zsp2I ATGCAT 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.