Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8460597.1

Orthogroup ID

OG0002218

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 790

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8460597.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggcaatcgccttctgcttcactccctcctcctcctcctccgcctccaagttcaaccctcaccgtccgattccgtccctctccgcttctcccgtcgtgcacctccgcctcagcgtgtccccgccctctctggcgcaccgcggccgccagttcccgcgcgtgctgttcgccgccgggggcggagacgggggatttggcggcggaggacactccggaggcggtggcggcggggatcacggcggcgaggacaatgccggcgggaaaaacaagttggaggccctgatggtgttgaaggagtccgggcgggggttggagagcctgccgaaggacttggcggcggcgatcgaggacgggcggatccccggcgcggttgtggataagtattttgaactggagaagaacggctgcttttcgtggctgctgcagtttgctgggtttagggagcggttgttggctgatgatcttttcttgtttaaggtcttcatggagtgtggtgttggtcttttcaccaagactgctgcagagtaccagaaacgccaagaaaactttttcaatgagctcgaagttgtgtttgcagatgtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

194

Amino Acids

20.63

Weight (kDa)

6.21

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12470
fragaria_vesca	FvH4_3g28550 FvH4_3g28550 FvH4_3g28550 FvH4_7g01660 FvH4_7g01660
malus_domestica	MD02G1301900.v1.1 MD03G1172700.v1.1 MD07G1022100.v1.1 MD07G1022200.v1.1 MD11G1190600.v1.1
prunus_persica	Prupe.2G022300_v2.0.a1 Prupe.4G253900_v2.0.a1
pyrus_communis	pycom02g25410 pycom03g12990 pycom07g01680 pycom11g16650
rosa_chinensis	RchiOBHm_Chr1g0317941 RchiOBHm_Chr5g0052771
rosa_laevigata	RLG00000030572 RLG00000034800
rosa_multiflora	Rmu_co8100628.1_g000001 Rmu_co8460597.1_g000001 Rmu_sc0010119.1_g000003 Rmu_sc0011424.1_g000037 Rmu_sc0014026.1_g000003 Rmu_ssc0000008.1_g000032
rosa_roxburghii	Rroxscaffold_1G00028580 Rroxscaffold_4G00330080
rosa_rugosa	Rorug01G0018600 Rorug01G0018700 Rorug05G0270000
rosa_samantha	Rh1AG030400 Rh1BG026800 Rh1CG029100 Rh1DG041100 Rh5AG342000 Rh5BG352600 Rh5CG379300 Rh5DG369000
rosa_wichuraiana	Rw0G017390 Rw1G002300 Rw5G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	445
AccII	CGCG	4 cut(s)	141, 157, 159, 368
AccIII	TCCGGA	1 cut(s)	212
AclWI	GGATC	3 cut(s)	240, 352, 365
AcoI	YGGCCR	1 cut(s)	142
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	3 cut(s)	306, 325, 367
AgsI	TTSAA	4 cut(s)	55, 292, 389, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	1 cut(s)	559
AluI	AGCT	1 cut(s)	559
Alw21I	GWGCWC	2 cut(s)	102, 561
Alw26I	GTCTC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	98
AlwI	GGATC	3 cut(s)	240, 352, 365
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	2 cut(s)	142, 276
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	4 cut(s)	405, 418, 421, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspLEI	GCGC	3 cut(s)	136, 159, 368
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	3 cut(s)	175, 301, 363
AsuHPI	GGTGA	2 cut(s)	53, 499
BaeGI	GKGCMC	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	472
Bbv12I	GWGCWC	2 cut(s)	102, 561
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	4 cut(s)	392, 405, 408, 505
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	2 cut(s)	253, 418
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BcnI	CCSGG	3 cut(s)	175, 301, 363
BcoDI	GTCTC	1 cut(s)	177
BfmI	CTRYAG	2 cut(s)	422, 519
Bme1390I	CCNGG	3 cut(s)	175, 301, 363
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	175, 301, 363
BpiI	GAAGAC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	110
BpuMI	CCSGG	3 cut(s)	175, 301, 363
BsaJI	CCNNGG	3 cut(s)	139, 174, 361
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 325, 367
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	148, 396
BseAI	TCCGGA	1 cut(s)	212
BseDI	CCNNGG	3 cut(s)	139, 174, 361
BseLI	CCNNNNNNNGG	3 cut(s)	306, 325, 367
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	2 cut(s)	148, 396
BseRI	GAGGAG	4 cut(s)	19, 22, 25, 28
BseSI	GKGCMC	1 cut(s)	102
BseX3I	CGGCCG	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	392, 405, 408, 505
BseYI	CCCAGC	1 cut(s)	431
Bsh1236I	CGCG	4 cut(s)	141, 157, 159, 368
Bsh1285I	CGRYCG	2 cut(s)	145, 345
BshFI	GGCC	2 cut(s)	144, 278
BsiEI	CGRYCG	2 cut(s)	145, 345
BsiHKAI	GWGCWC	2 cut(s)	102, 561
BsiSI	CCGG	5 cut(s)	174, 213, 255, 300, 363
BslFI	GGGAC	2 cut(s)	61, 103
BslI	CCNNNNNNNGG	3 cut(s)	306, 325, 367
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	61, 103
BsnI	GGCC	2 cut(s)	144, 278
Bsp1286I	GDGCHC	2 cut(s)	102, 561
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	4 cut(s)	232, 342, 357, 460
BspANI	GGCC	2 cut(s)	144, 278
BspCNI	CTCAG	1 cut(s)	123
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	4 cut(s)	141, 157, 159, 368
BspLI	GGNNCC	1 cut(s)	359
BspMAI	CTGCAG	2 cut(s)	426, 523
BspPI	GGATC	3 cut(s)	240, 352, 365
BsrBI	CCGCTC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	2 cut(s)	148, 396
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	139, 174, 361
BssMI	GATC	4 cut(s)	232, 342, 357, 460
Bst4CI	ACNGT	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	161, 256, 320
BstDEI	CTNAG	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	139
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstFNI	CGCG	4 cut(s)	141, 157, 159, 368
BstHHI	GCGC	3 cut(s)	136, 159, 368
BstKTI	GATC	4 cut(s)	235, 345, 360, 463
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	4 cut(s)	232, 342, 357, 460
BstMCI	CGRYCG	2 cut(s)	145, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	173, 299, 361
BstSFI	CTRYAG	2 cut(s)	422, 519
BstSLI	GKGCMC	1 cut(s)	102
BstUI	CGCG	4 cut(s)	141, 157, 159, 368
BstV1I	GCAGC	4 cut(s)	392, 405, 408, 505
BstV2I	GAAGAC	1 cut(s)	472
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BstZI	CGGCCG	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	144, 278
BtgI	CCRYGG	1 cut(s)	139
Cac8I	GCNNGC	3 cut(s)	161, 256, 320
CciNI	GCGGCCGC	1 cut(s)	142
CfoI	GCGC	3 cut(s)	136, 159, 368
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	1 cut(s)	484
CviJI	RGCY	7 cut(s)	144, 278, 318, 405, 418, 455, 559
CviKI_1	RGCY	7 cut(s)	144, 278, 318, 405, 418, 455, 559
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	4 cut(s)	234, 344, 359, 462
DpnII	GATC	4 cut(s)	232, 342, 357, 460
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
EciI	GGCGGA	5 cut(s)	31, 95, 195, 216, 370
Ecl136II	GAGCTC	1 cut(s)	559
EclXI	CGGCCG	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	561
Eco52I	CGGCCG	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	559
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	1 cut(s)	487
FaiI	YATR	1 cut(s)	485
FaqI	GGGAC	2 cut(s)	61, 103
FatI	CATG	1 cut(s)	483
FauI	CCCGC	5 cut(s)	129, 162, 221, 251, 297
FriOI	GRGCYC	1 cut(s)	561
GlaI	GCGC	3 cut(s)	135, 158, 367
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	144, 278
HapII	CCGG	5 cut(s)	174, 213, 255, 300, 363
HhaI	GCGC	3 cut(s)	136, 159, 368
Hin1II	CATG	1 cut(s)	487
Hin6I	GCGC	3 cut(s)	134, 157, 366
HinP1I	GCGC	3 cut(s)	134, 157, 366
HinfI	GANTC	2 cut(s)	70, 296
HpaII	CCGG	5 cut(s)	174, 213, 255, 300, 363
HphI	GGTGA	2 cut(s)	53, 499
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	22, 286, 319
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	100, 424, 521, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	487
HspAI	GCGC	3 cut(s)	134, 157, 366
Kpn2I	TCCGGA	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	232, 342, 357, 460
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	4 cut(s)	392, 405, 408, 505
MalI	GATC	4 cut(s)	234, 344, 359, 462
MbiI	CCGCTC	1 cut(s)	445
MboI	GATC	4 cut(s)	232, 342, 357, 460
MboII	GAAGA	2 cut(s)	409, 472
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	102, 561
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	252, 291
MroI	TCCGGA	1 cut(s)	212
MroNI	GCCGGC	1 cut(s)	254
MseI	TTAA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	5 cut(s)	174, 213, 255, 300, 363
MspR9I	CCNGG	3 cut(s)	175, 301, 363
MvnI	CGCG	4 cut(s)	141, 157, 159, 368
MwoI	GCNNNNNNNGC	1 cut(s)	225
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	3 cut(s)	175, 301, 363
NdeII	GATC	4 cut(s)	232, 342, 357, 460
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	1 cut(s)	359
NotI	GCGGCCGC	1 cut(s)	142
PdiI	GCCGGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	70
Ple19I	CGATCG	1 cut(s)	345
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	2 cut(s)	426, 523
PsuI	RGATCY	1 cut(s)	357
PvuI	CGATCG	1 cut(s)	345
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SacI	GAGCTC	1 cut(s)	561
SacII	CCGCGG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	4 cut(s)	232, 342, 357, 460
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	175, 301, 363
SduI	GDGCHC	2 cut(s)	102, 561
SetI	ASST	3 cut(s)	105, 480, 561
SfcI	CTRYAG	2 cut(s)	422, 519
Sfr303I	CCGCGG	1 cut(s)	142
SgrBI	CCGCGG	1 cut(s)	142
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	173, 299, 361
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	345, 561
TauI	GCSGC	8 cut(s)	144, 147, 173, 201, 228, 243, 338, 341
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	4 cut(s)	405, 418, 421, 518
TspDTI	ATGAA	1 cut(s)	472
TspGWI	ACGGA	1 cut(s)	63
VneI	GTGCAC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.