Rh5DG369000

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002218
Physical Location & Seq
Reverse (-)
55345131 .. 55350147
5017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG369000.1

Sequence Viewer

Length: 807 bp
ATGGCAATCGCCTTCTGCTTCACTCCCTCCTCCTCCTCTTCCTCCTCCGCCTCCAAGTTCAATCCGCACCGTCCGTTTCCGTCCCTCTCCGCCTCTCCCGTCGTGCACCTCCGCCTCAGAGTGTCCCCGCCCTCTCTGGCGCACCGCGGCCGCCAGTTCCGGCGCGTGCTGTTCGCCGCCGGGGGCGGAGACGGGGGATTTGGCGGCGGAGGACACTCCGGAGGCGGTAGCGGCGGGGATCACGGCGGCGAGGACAATGCCGGCGGGAAAAACAAGTTGGAGGCCCTGATGGTGTTGAAGGAGTCCGGGCGGGGGTTGGAGAGCCTGCCGAAGGACTTGGCGGCGGCGATCGAGGACGGGCGGATCCCCGGCGCGGTTGTGGATAAGTATTTTGAGCTGGAGAAGAACGGCTGCTTTTCGTGGCTGCTGCAGTTTGCTGGGTTTAGGGAGCGGTTGTTGGCTGATGATCTTTTCTTGTTTAAGGTCTTCATGGAGTGTGGTGTTGGTCTTTTCACCAAGACTGCTGCAGAGTACCAGAAACGCCAAGAAAACTTTTTCAATGAGCTCGAAGTTGTGTTTGCAGATGTGGTAATGGCCATAATTGCAGATTTCATGCTTGTATATCTTCCTGCCCCAACTGTTTCTCTTCGACCACCAGTTGCACTCAGCGCAGGGGCAATCACCAAGTTTTTGCATGGTTGCCCTGATAATGCATTCCAGATTGCTATCTCAGGAACATCATACTCCTTATTTCAGAGGATTGGTGCAGTAGTGGTAAGGAGGATTTTATTTGAAGTTTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

268

Amino Acids

28.75

Weight (kDa)

8.68

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 150 - 264 1.4e-36 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 451
AccII CGCG 3 cut(s) 147, 165, 374
AccIII TCCGGA 1 cut(s) 218
AclWI GGATC 3 cut(s) 246, 358, 371
AcoI YGGCCR 2 cut(s) 148, 594
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 3 cut(s) 312, 331, 373
AgsI TTSAA 5 cut(s) 61, 298, 559, 794, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 2 cut(s) 397, 565
AluI AGCT 2 cut(s) 397, 565
Alw21I GWGCWC 2 cut(s) 108, 567
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 3 cut(s) 246, 358, 371
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 3 cut(s) 148, 282, 594
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 4 cut(s) 411, 424, 427, 524
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspLEI GCGC 4 cut(s) 142, 165, 374, 671
AspS9I GGNCC 1 cut(s) 283
AsuC2I CCSGG 3 cut(s) 181, 307, 369
AsuHPI GGTGA 2 cut(s) 505, 673
BaeGI GKGCMC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 596
BamHI GGATCC 1 cut(s) 363
BanII GRGCYC 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 2 cut(s) 108, 567
BbvI GCAGC 4 cut(s) 398, 411, 414, 511
BccI CCATC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 259, 424
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BcnI CCSGG 3 cut(s) 181, 307, 369
BcoDI GTCTC 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 428, 525
Bme1390I CCNGG 3 cut(s) 181, 307, 369
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 3 cut(s) 181, 307, 369
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 419
BpuMI CCSGG 3 cut(s) 181, 307, 369
BsaBI GATNNNNATC 1 cut(s) 725
BsaJI CCNNGG 3 cut(s) 145, 180, 367
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 331, 373
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 154, 656
Bse8I GATNNNNATC 1 cut(s) 725
BseAI TCCGGA 1 cut(s) 218
BseDI CCNNGG 3 cut(s) 145, 180, 367
BseJI GATNNNNATC 1 cut(s) 725
BseLI CCNNNNNNNGG 3 cut(s) 312, 331, 373
BseMII CTCAG 3 cut(s) 130, 679, 744
BseNI ACTGG 2 cut(s) 154, 656
BseRI GAGGAG 4 cut(s) 19, 22, 25, 34
BseSI GKGCMC 1 cut(s) 108
BseX3I CGGCCG 1 cut(s) 148
BseXI GCAGC 4 cut(s) 398, 411, 414, 511
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 786
Bsh1236I CGCG 3 cut(s) 147, 165, 374
Bsh1285I CGRYCG 2 cut(s) 151, 351
BshFI GGCC 3 cut(s) 150, 284, 596
BsiEI CGRYCG 2 cut(s) 151, 351
BsiHKAI GWGCWC 2 cut(s) 108, 567
BsiSI CCGG 6 cut(s) 160, 180, 219, 261, 306, 369
BslFI GGGAC 2 cut(s) 67, 109
BslI CCNNNNNNNGG 3 cut(s) 312, 331, 373
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 67, 109
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 3 cut(s) 150, 284, 596
Bsp1286I GDGCHC 2 cut(s) 108, 567
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 4 cut(s) 238, 348, 363, 466
BspANI GGCC 3 cut(s) 150, 284, 596
BspCNI CTCAG 3 cut(s) 129, 678, 743
BspEI TCCGGA 1 cut(s) 218
BspFNI CGCG 3 cut(s) 147, 165, 374
BspLI GGNNCC 1 cut(s) 365
BspMAI CTGCAG 2 cut(s) 432, 529
BspPI GGATC 3 cut(s) 246, 358, 371
BsrBI CCGCTC 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 2 cut(s) 154, 656
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 145, 180, 367
BssMI GATC 4 cut(s) 238, 348, 363, 466
Bst4CI ACNGT 2 cut(s) 71, 640
Bst6I CTCTTC 2 cut(s) 43, 651
BstC8I GCNNGC 3 cut(s) 167, 262, 326
BstDEI CTNAG 3 cut(s) 116, 665, 730
BstDSI CCRYGG 1 cut(s) 145
BstENI CCTNNNNNAGG 1 cut(s) 329
BstFNI CGCG 3 cut(s) 147, 165, 374
BstHHI GCGC 4 cut(s) 142, 165, 374, 671
BstKTI GATC 4 cut(s) 241, 351, 366, 469
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 4 cut(s) 238, 348, 363, 466
BstMCI CGRYCG 2 cut(s) 151, 351
BstMWI GCNNNNNNNGC 3 cut(s) 231, 602, 668
BstSCI CCNGG 3 cut(s) 179, 305, 367
BstSFI CTRYAG 2 cut(s) 428, 525
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 3 cut(s) 147, 165, 374
BstV1I GCAGC 4 cut(s) 398, 411, 414, 511
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BstZI CGGCCG 1 cut(s) 148
BsuRI GGCC 3 cut(s) 150, 284, 596
BtgI CCRYGG 1 cut(s) 145
Cac8I GCNNGC 3 cut(s) 167, 262, 326
CciNI GCGGCCGC 1 cut(s) 148
CfoI GCGC 4 cut(s) 142, 165, 374, 671
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 283
Cfr42I CCGCGG 1 cut(s) 148
Csp6I GTAC 1 cut(s) 532
CviAII CATG 3 cut(s) 490, 613, 695
CviJI RGCY 9 cut(s) 150, 284, 324, 397, 411, 424, 461, 565, 596
CviKI_1 RGCY 9 cut(s) 150, 284, 324, 397, 411, 424, 461, 565, 596
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 3 cut(s) 116, 665, 730
DpnI GATC 4 cut(s) 240, 350, 365, 468
DpnII GATC 4 cut(s) 238, 348, 363, 466
EaeI YGGCCR 2 cut(s) 148, 594
EagI CGGCCG 1 cut(s) 148
Eam1104I CTCTTC 2 cut(s) 43, 651
EarI CTCTTC 2 cut(s) 43, 651
EciI GGCGGA 6 cut(s) 37, 79, 101, 201, 222, 376
Ecl136II GAGCTC 1 cut(s) 565
EclXI CGGCCG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 567
Eco52I CGGCCG 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 565
EcoICRI GAGCTC 1 cut(s) 565
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 3 cut(s) 493, 616, 698
FaiI YATR 6 cut(s) 491, 599, 614, 622, 696, 742
FaqI GGGAC 2 cut(s) 67, 109
FatI CATG 3 cut(s) 489, 612, 694
FauI CCCGC 4 cut(s) 135, 227, 257, 303
FriOI GRGCYC 1 cut(s) 567
GlaI GCGC 4 cut(s) 141, 164, 373, 670
GsaI CCCAGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 3 cut(s) 150, 284, 596
HapII CCGG 6 cut(s) 160, 180, 219, 261, 306, 369
HhaI GCGC 4 cut(s) 142, 165, 374, 671
Hin1II CATG 3 cut(s) 493, 616, 698
Hin6I GCGC 4 cut(s) 140, 163, 372, 669
HinP1I GCGC 4 cut(s) 140, 163, 372, 669
HinfI GANTC 1 cut(s) 302
HpaII CCGG 6 cut(s) 160, 180, 219, 261, 306, 369
HphI GGTGA 2 cut(s) 505, 673
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 119, 756
Hpy188III TCNNGA 3 cut(s) 219, 718, 732
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 22, 292, 325
HpyCH4III ACNGT 2 cut(s) 71, 640
HpyCH4V TGCA 9 cut(s) 106, 430, 527, 581, 605, 662, 694, 713, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 602, 668
HpyF3I CTNAG 3 cut(s) 116, 665, 730
Hsp92II CATG 3 cut(s) 493, 616, 698
HspAI GCGC 4 cut(s) 140, 163, 372, 669
Kpn2I TCCGGA 1 cut(s) 218
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 4 cut(s) 238, 348, 363, 466
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 4 cut(s) 398, 411, 414, 511
MalI GATC 4 cut(s) 240, 350, 365, 468
MbiI CCGCTC 1 cut(s) 451
MboI GATC 4 cut(s) 238, 348, 363, 466
MboII GAAGA 5 cut(s) 30, 415, 478, 617, 638
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 2 cut(s) 108, 567
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 1 cut(s) 600
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 258, 297
Mox20I TGGCCA 1 cut(s) 596
Mph1103I ATGCAT 1 cut(s) 715
MroI TCCGGA 1 cut(s) 218
MroNI GCCGGC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 596
MseI TTAA 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 6 cut(s) 160, 180, 219, 261, 306, 369
MspR9I CCNGG 3 cut(s) 181, 307, 369
Mva1269I GAATGC 1 cut(s) 713
MvnI CGCG 3 cut(s) 147, 165, 374
MwoI GCNNNNNNNGC 3 cut(s) 231, 602, 668
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 3 cut(s) 181, 307, 369
NdeII GATC 4 cut(s) 238, 348, 363, 466
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 3 cut(s) 493, 616, 698
NlaIV GGNNCC 1 cut(s) 365
NotI GCGGCCGC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 715
PctI GAATGC 1 cut(s) 713
PdiI GCCGGC 1 cut(s) 262
Ple19I CGATCG 1 cut(s) 351
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 567
PspFI CCCAGC 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 1 cut(s) 283
PstI CTGCAG 2 cut(s) 432, 529
PsuI RGATCY 1 cut(s) 363
PvuI CGATCG 1 cut(s) 351
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
SacI GAGCTC 1 cut(s) 567
SacII CCGCGG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 480
Sau3AI GATC 4 cut(s) 238, 348, 363, 466
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 3 cut(s) 181, 307, 369
SduI GDGCHC 2 cut(s) 108, 567
SetI ASST 4 cut(s) 111, 399, 486, 567
SfcI CTRYAG 2 cut(s) 428, 525
Sfr303I CCGCGG 1 cut(s) 148
SgrBI CCGCGG 1 cut(s) 148
Sse9I AATT 1 cut(s) 600
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 3 cut(s) 179, 305, 367
TaaI ACNGT 2 cut(s) 71, 640
TaqI TCGA 3 cut(s) 351, 567, 649
TasI AATT 1 cut(s) 600
TauI GCSGC 8 cut(s) 150, 153, 179, 207, 234, 249, 344, 347
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseI GCWGC 4 cut(s) 411, 424, 427, 524
TspDTI ATGAA 2 cut(s) 478, 601
TspGWI ACGGA 2 cut(s) 63, 69
VneI GTGCAC 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.