Rw5G032240

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002218
Physical Location & Seq
Reverse (-)
54393372 .. 54398073
4702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032240.1

Sequence Viewer

Length: 1128 bp
ATGGCAATCGCCTTCTGCTTCACTCCCTCCTCCTCCTCCTCCTCCGCCTCCAAGTTCAACCCTCACCGTCCGATTCCGTCCCTCTCCGCCTCTCCCGTCGTGCACCTCCGCCTCAGCCTGTCCCCGCCCTCTCTGGCGCACCGCGGCCGCCAGTTCCGGCGAGTGCTGTTCGCCGCCGGGGGCGGAGACGGGGGATTTGGCGGCGGAGGACACTCCGGAGGCGGTGGCGGCGGGGATCACGGCGGAGAGGACAATGCCGGCGGGAAAAACAAGGTGGAGGCTCTGATGGTGTTGAAGGAGTCCGGGCGGGGGTTGGAGAGCCTGCCGAAGGACTTGGCGGCGGCGATCGAGGACGGGCGGATCCCCGGCGCGGTTGTGGATAAGTATTTTGAGCTGGAGAAGAACGGCTGCTTTTCGTGGCTGCTGCAGTTTGCTGGGTTTAGGGAGCGGTTGTTGGCTGATGATCTTTTCTTGTTTAAGGTCTTCATGGAGTGTGGTGTTGGTCTTTTCACCAAGACTGCTGCAGAGTACCAGAAACGCCAAGAAAACTTTTTCAATGAGCTCGAAGTTGTGTTTGCAGATGTGGTAATGGCCATAATTGCAGATTTCATGCTTGTATATCTTCCTGCCCCAACTGTTTCTCTTCGACCACCAGTTGCACTCAGCGCAGGGGCAATCACCAAGTTTTTCCATGGTTGCCCTGATAATGCATTCCAGATTGCTATCTCAGGAACATCATACTCCTTATTTCAGAGGATTGGTGCAGTAGTGAGAAATGGGAGCAAGCTCTTCGTTGTTGGTACTGCTTCATCACTGGTTGGCACAAGTGTTACAAATGCCTTGATCAATGCAAAGAAGGCTGTTGGTAGCTCCGCAGAGGCTGAAGCTGAGCATGTACCTATAGTATCCACTAGCCTTGCATACGGTGTCTATATGGCAGTTTCTAGCAATCTCAGGTACCAAGTATTGGCTGGTGTTATTGAACAAAGGATGTTGGAGCCACTACTACATCAACACAAGCTAATGCTAAGCGCAGTATGCTTTGCCGTTCGAACTGGCAACACATTCTTGGGTTCATTATTGTGGGTGGACTATGCTCGTTTAATCGGGATTCAGAAGGCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

375

Amino Acids

39.91

Weight (kDa)

8.74

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 149 - 326 7.4e-65 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 957
AccB1I GGYRCC 1 cut(s) 957
AccB7I CCANNNNNTGG 1 cut(s) 967
AccBSI CCGCTC 1 cut(s) 448
AccII CGCG 2 cut(s) 144, 371
AccIII TCCGGA 1 cut(s) 215
AclWI GGATC 3 cut(s) 243, 355, 368
AcoI YGGCCR 2 cut(s) 145, 591
AcuI CTGAAG 1 cut(s) 903
AfaI GTAC 4 cut(s) 530, 802, 897, 959
AfiI CCNNNNNNNGG 4 cut(s) 309, 328, 370, 967
AgsI TTSAA 4 cut(s) 58, 295, 556, 983
AluBI AGCT 6 cut(s) 394, 562, 787, 870, 887, 1021
AluI AGCT 6 cut(s) 394, 562, 787, 870, 887, 1021
Alw21I GWGCWC 2 cut(s) 105, 564
Alw26I GTCTC 1 cut(s) 180
Alw44I GTGCAC 1 cut(s) 101
AlwI GGATC 3 cut(s) 243, 355, 368
AlwNI CAGNNNCTG 1 cut(s) 881
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 3 cut(s) 145, 591, 1119
ApaLI GTGCAC 1 cut(s) 101
ApeKI GCWGC 4 cut(s) 408, 421, 424, 521
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp718I GGTACC 1 cut(s) 957
AspLEI GCGC 4 cut(s) 139, 371, 668, 1034
AspS9I GGNCC 1 cut(s) 1120
AsuC2I CCSGG 3 cut(s) 178, 304, 366
AsuHPI GGTGA 3 cut(s) 56, 502, 670
AsuII TTCGAA 1 cut(s) 1051
BaeGI GKGCMC 1 cut(s) 105
BalI TGGCCA 1 cut(s) 593
BamHI GGATCC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 957
BanII GRGCYC 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 475
Bbv12I GWGCWC 2 cut(s) 105, 564
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 4 cut(s) 395, 408, 411, 508
BccI CCATC 1 cut(s) 280
BceAI ACGGC 3 cut(s) 256, 421, 1031
BcgI CGANNNNNNTGC 2 cut(s) 772, 806
BciVI GTATCC 1 cut(s) 916
BclI TGATCA 1 cut(s) 843
BcnI CCSGG 3 cut(s) 178, 304, 366
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 2 cut(s) 912, 945
BfmI CTRYAG 3 cut(s) 425, 522, 900
BfuI GTATCC 1 cut(s) 916
BlpI GCTNAGC 2 cut(s) 888, 1028
Bme1390I CCNGG 3 cut(s) 178, 304, 366
BmgT120I GGNCC 1 cut(s) 1120
BmiI GGNNCC 3 cut(s) 362, 959, 999
BmrFI CCNGG 3 cut(s) 178, 304, 366
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 113
Bpu1102I GCTNAGC 2 cut(s) 888, 1028
Bpu14I TTCGAA 1 cut(s) 1051
BpuMI CCSGG 3 cut(s) 178, 304, 366
BsaBI GATNNNNATC 1 cut(s) 722
BsaJI CCNNGG 4 cut(s) 142, 177, 364, 691
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 328, 370, 967
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 4 cut(s) 151, 653, 819, 1060
Bse8I GATNNNNATC 1 cut(s) 722
BseAI TCCGGA 1 cut(s) 215
BseDI CCNNGG 4 cut(s) 142, 177, 364, 691
BseGI GGATG 1 cut(s) 996
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 4 cut(s) 309, 328, 370, 967
BseMII CTCAG 5 cut(s) 127, 676, 741, 879, 967
BseNI ACTGG 4 cut(s) 151, 653, 819, 1060
BseRI GAGGAG 5 cut(s) 19, 22, 25, 28, 31
BseSI GKGCMC 1 cut(s) 105
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 4 cut(s) 395, 408, 411, 508
BseYI CCCAGC 1 cut(s) 434
BsgI GTGCAG 1 cut(s) 783
Bsh1236I CGCG 2 cut(s) 144, 371
Bsh1285I CGRYCG 2 cut(s) 148, 348
BshFI GGCC 3 cut(s) 147, 593, 1121
BshNI GGYRCC 1 cut(s) 957
BsiEI CGRYCG 2 cut(s) 148, 348
BsiHKAI GWGCWC 2 cut(s) 105, 564
BsiSI CCGG 6 cut(s) 157, 177, 216, 258, 303, 366
BslFI GGGAC 2 cut(s) 64, 106
BslI CCNNNNNNNGG 4 cut(s) 309, 328, 370, 967
BsmAI GTCTC 1 cut(s) 180
BsmBI CGTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 64, 106
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 3 cut(s) 147, 593, 1121
Bsp119I TTCGAA 1 cut(s) 1051
Bsp1286I GDGCHC 2 cut(s) 105, 564
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 5 cut(s) 235, 345, 360, 463, 843
Bsp1720I GCTNAGC 2 cut(s) 888, 1028
Bsp19I CCATGG 1 cut(s) 691
BspANI GGCC 3 cut(s) 147, 593, 1121
BspCNI CTCAG 5 cut(s) 126, 675, 740, 880, 966
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 2 cut(s) 144, 371
BspLI GGNNCC 3 cut(s) 362, 959, 999
BspMAI CTGCAG 2 cut(s) 429, 526
BspPI GGATC 3 cut(s) 243, 355, 368
BspQI GCTCTTC 1 cut(s) 794
BspT104I TTCGAA 1 cut(s) 1051
BspT107I GGYRCC 1 cut(s) 957
BsrBI CCGCTC 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 4 cut(s) 151, 653, 819, 1060
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 4 cut(s) 142, 177, 364, 691
BssMI GATC 5 cut(s) 235, 345, 360, 463, 843
BssT1I CCWWGG 1 cut(s) 691
Bst4CI ACNGT 3 cut(s) 68, 637, 926
Bst6I CTCTTC 2 cut(s) 648, 794
BstBI TTCGAA 1 cut(s) 1051
BstC8I GCNNGC 3 cut(s) 259, 323, 785
BstDEI CTNAG 6 cut(s) 113, 662, 727, 888, 953, 1028
BstDSI CCRYGG 2 cut(s) 142, 691
BstENI CCTNNNNNAGG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 996
BstFNI CGCG 2 cut(s) 144, 371
BstHHI GCGC 4 cut(s) 139, 371, 668, 1034
BstKTI GATC 5 cut(s) 238, 348, 363, 466, 846
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 5 cut(s) 235, 345, 360, 463, 843
BstMCI CGRYCG 2 cut(s) 148, 348
BstMWI GCNNNNNNNGC 5 cut(s) 228, 599, 665, 857, 1038
BstNSI RCATGY 1 cut(s) 896
BstSCI CCNGG 3 cut(s) 176, 302, 364
BstSFI CTRYAG 3 cut(s) 425, 522, 900
BstSLI GKGCMC 1 cut(s) 105
BstUI CGCG 2 cut(s) 144, 371
BstV1I GCAGC 4 cut(s) 395, 408, 411, 508
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BstZI CGGCCG 1 cut(s) 145
BsuI GTATCC 1 cut(s) 916
BsuRI GGCC 3 cut(s) 147, 593, 1121
BtgI CCRYGG 2 cut(s) 142, 691
BtsCI GGATG 1 cut(s) 996
BtsIMutI CAGTG 1 cut(s) 812
Cac8I GCNNGC 3 cut(s) 259, 323, 785
CaiI CAGNNNCTG 1 cut(s) 881
CciNI GCGGCCGC 1 cut(s) 145
CfoI GCGC 4 cut(s) 139, 371, 668, 1034
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 1120
Cfr42I CCGCGG 1 cut(s) 145
Csp6I GTAC 4 cut(s) 529, 801, 896, 958
CspCI CAANNNNNGTGG 2 cut(s) 898, 933
CviAII CATG 4 cut(s) 487, 610, 692, 893
CviQI GTAC 4 cut(s) 529, 801, 896, 958
DdeI CTNAG 6 cut(s) 113, 662, 727, 888, 953, 1028
DpnI GATC 5 cut(s) 237, 347, 362, 465, 845
DpnII GATC 5 cut(s) 235, 345, 360, 463, 843
EaeI YGGCCR 2 cut(s) 145, 591
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 648, 794
EarI CTCTTC 2 cut(s) 648, 794
EciI GGCGGA 7 cut(s) 34, 76, 98, 198, 219, 258, 373
Ecl136II GAGCTC 1 cut(s) 562
EclXI CGGCCG 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 564
Eco52I CGGCCG 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 903
EcoICRI GAGCTC 1 cut(s) 562
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 691
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 691
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 4 cut(s) 490, 613, 695, 896
FaqI GGGAC 2 cut(s) 64, 106
FatI CATG 4 cut(s) 486, 609, 691, 892
FauI CCCGC 4 cut(s) 132, 224, 254, 300
FbaI TGATCA 1 cut(s) 843
FokI GGATG 1 cut(s) 1003
FriOI GRGCYC 1 cut(s) 564
FspBI CTAG 2 cut(s) 912, 945
GlaI GCGC 4 cut(s) 138, 370, 667, 1033
GsaI CCCAGC 1 cut(s) 438
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 3 cut(s) 147, 593, 1121
HapII CCGG 6 cut(s) 157, 177, 216, 258, 303, 366
HhaI GCGC 4 cut(s) 139, 371, 668, 1034
Hin1II CATG 4 cut(s) 490, 613, 695, 896
Hin6I GCGC 4 cut(s) 137, 369, 666, 1032
HinP1I GCGC 4 cut(s) 137, 369, 666, 1032
HinfI GANTC 3 cut(s) 73, 299, 1111
HpaII CCGG 6 cut(s) 157, 177, 216, 258, 303, 366
HphI GGTGA 3 cut(s) 56, 502, 670
Hpy166II GTNNAC 2 cut(s) 103, 1090
Hpy188I TCNGA 4 cut(s) 72, 285, 753, 1116
Hpy188III TCNNGA 4 cut(s) 216, 715, 729, 1108
Hpy8I GTNNAC 2 cut(s) 103, 1090
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 5 cut(s) 22, 289, 322, 850, 1111
HpyCH4III ACNGT 3 cut(s) 68, 637, 926
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 599, 665, 857, 1038
HpyF3I CTNAG 6 cut(s) 113, 662, 727, 888, 953, 1028
Hsp92II CATG 4 cut(s) 490, 613, 695, 896
HspAI GCGC 4 cut(s) 137, 369, 666, 1032
Kpn2I TCCGGA 1 cut(s) 215
KpnI GGTACC 1 cut(s) 961
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 843
KspI CCGCGG 1 cut(s) 145
Kzo9I GATC 5 cut(s) 235, 345, 360, 463, 843
LguI GCTCTTC 1 cut(s) 794
LmnI GCTCC 4 cut(s) 445, 780, 875, 997
Lsp1109I GCAGC 4 cut(s) 395, 408, 411, 508
MaeI CTAG 2 cut(s) 912, 945
MaeIII GTNAC 1 cut(s) 829
MalI GATC 5 cut(s) 237, 347, 362, 465, 845
MbiI CCGCTC 1 cut(s) 448
MboI GATC 5 cut(s) 235, 345, 360, 463, 843
MboII GAAGA 5 cut(s) 412, 475, 614, 635, 781
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 2 cut(s) 105, 564
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 1 cut(s) 597
MluNI TGGCCA 1 cut(s) 593
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 294, 975
Mox20I TGGCCA 1 cut(s) 593
Mph1103I ATGCAT 1 cut(s) 712
MroI TCCGGA 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 257
MscI TGGCCA 1 cut(s) 593
MseI TTAA 2 cut(s) 477, 1103
MslI CAYNNNNRTG 1 cut(s) 1081
Msp20I TGGCCA 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 6 cut(s) 157, 177, 216, 258, 303, 366
MspR9I CCNGG 3 cut(s) 178, 304, 366
Mva1269I GAATGC 1 cut(s) 710
MvnI CGCG 2 cut(s) 144, 371
MwoI GCNNNNNNNGC 5 cut(s) 228, 599, 665, 857, 1038
NaeI GCCGGC 1 cut(s) 259
NciI CCSGG 3 cut(s) 178, 304, 366
NcoI CCATGG 1 cut(s) 691
NdeII GATC 5 cut(s) 235, 345, 360, 463, 843
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 4 cut(s) 490, 613, 695, 896
NlaIV GGNNCC 3 cut(s) 362, 959, 999
NotI GCGGCCGC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 1 cut(s) 896
NspV TTCGAA 1 cut(s) 1051
PciSI GCTCTTC 1 cut(s) 794
PctI GAATGC 1 cut(s) 710
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 73, 1111
PflMI CCANNNNNTGG 1 cut(s) 967
Ple19I CGATCG 1 cut(s) 348
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 434
PspN4I GGNNCC 3 cut(s) 362, 959, 999
PspPI GGNCC 1 cut(s) 1120
PstI CTGCAG 2 cut(s) 429, 526
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 1 cut(s) 360
PvuI CGATCG 1 cut(s) 348
RsaI GTAC 4 cut(s) 530, 802, 897, 959
RsaNI GTAC 4 cut(s) 529, 801, 896, 958
RseI CAYNNNNRTG 1 cut(s) 1081
SacI GAGCTC 1 cut(s) 564
SacII CCGCGG 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 794
SaqAI TTAA 2 cut(s) 477, 1103
Sau3AI GATC 5 cut(s) 235, 345, 360, 463, 843
Sau96I GGNCC 1 cut(s) 1120
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 178, 304, 366
SduI GDGCHC 2 cut(s) 105, 564
SfcI CTRYAG 3 cut(s) 425, 522, 900
Sfr303I CCGCGG 1 cut(s) 145
SfuI TTCGAA 1 cut(s) 1051
SgrBI CCGCGG 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 1081
Sse9I AATT 1 cut(s) 597
SspMI CTAG 2 cut(s) 912, 945
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 3 cut(s) 176, 302, 364
StyI CCWWGG 1 cut(s) 691
TaaI ACNGT 3 cut(s) 68, 637, 926
TaqI TCGA 4 cut(s) 348, 564, 646, 1051
TasI AATT 1 cut(s) 597
TauI GCSGC 7 cut(s) 147, 150, 176, 204, 231, 341, 344
TfiI GAWTC 2 cut(s) 73, 1111
Tru1I TTAA 2 cut(s) 477, 1103
Tru9I TTAA 2 cut(s) 477, 1103
TscAI CASTG 1 cut(s) 819
TseI GCWGC 4 cut(s) 408, 421, 424, 521
TspDTI ATGAA 4 cut(s) 475, 598, 798, 1065
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 819
Van91I CCANNNNNTGG 1 cut(s) 967
VneI GTGCAC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 326
XceI RCATGY 1 cut(s) 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XspI CTAG 2 cut(s) 912, 945
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.