MD11G1190600.v1.1

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002218
Physical Location & Seq
Reverse (-)
26903039 .. 26907744
4706 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1190600.v1.1.491

Sequence Viewer

Length: 1152 bp
ATGGCGATCGCCTTCTGCTTCGCTCCCTCTTCCTCCGCCGCCTCCTCTTCCTCTCTCTCCAAACTCAATCCCCACCGTCCATCTCTCTCCGCCTCCGCCTCCTCGCCCCTCCTCCACCTCCGCCTCACCGTCACCCCTCCCTCCCTCACCCACCGCCACCGCCAGTTCCGCCGCATCCTCTTCTCCGCCGGCGACGACGACGGAGGGATTAACGGACGTGACTCCTCAGGAGGAGGCGGCGGCGGAGATGACGGCGACAGCGACGGAGGGTCCGACAATGCCGGCGGAAAGAACAGGGCGGAGGCGTTGATGGTGTTGGCGCAGTCTAAGCGGGGGTTGGAGAGCTTGCCCAAGGACTTGGCTGCTGCGGTCCAGGCGAGTCGGATCCCCGGGTCGGTTGTGGGGCGGTACTTTGAGCTGGAGAAGTCGGGTCTGTTCCGGTGGTTGATGCAATTCGCTGGGTTTAGAGAGAGGTTGCTCGCTGATGATCTTTTCTTCGCTAAGGTTTTCATGGAATGCGGCGTTGGTCTCTTCACTAAGACTGCTGCAGAGTACGAGAGGCGGAGAGAGAACTTTTTCAACGAGCTGGAAGTTGTTTTTGCAGATGTGGTAATGGCCATACTTGCAGATTTCATGCTTGTTTATCTTCCTGCCCCAACTGTCTCTCTTCGACCTCCACTTGGGCTCGATGCAGGAGCAATCACTAGGTTTTTCCATGGCTGCCCCGACAATGCCTTCCAGATCGCTATGTCTGGAACATCATACTCATTATTACAGAGGATTGGTGGAGTAGTGAGAAATGGGACCAAGCTATTTGCTGTTGGTACTGCTTCATCACTGGTTGGCACAGCTGTGACAAATGCCTTGATCAACGCAAGGAAAGCTGTTGATAAGGACAAAGCAGGTGAACTTGAGAATGTGCCTATAGTATCCACTAGCGTAGCATATGGTGTCTACATGGCAGTTTCTAGCAATCTCAGGTACCAAGTGTTGGCTGGTGTTATTGAACAAAGGTTTTTGGAACCACTACTACATCAAAACAAGCTCATGCTAAGCGCAATTTGCTTTGCCATTCGCACTGGAAACACATTCTTGGGTTCATTATTGTGGGTCGACTATGCTCGTTTCATAGGAATTCAAAAGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

384

Amino Acids

41.14

Weight (kDa)

9.01

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 157 - 334 2.6e-63 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 893
Acc65I GGTACC 1 cut(s) 981
AccB1I GGYRCC 1 cut(s) 981
AccB7I CCANNNNNTGG 1 cut(s) 991
AccI GTMKAC 2 cut(s) 954, 1113
AclWI GGATC 2 cut(s) 379, 392
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 1 cut(s) 1134
AfaI GTAC 4 cut(s) 410, 554, 826, 983
AfiI CCNNNNNNNGG 3 cut(s) 394, 680, 991
AgsI TTSAA 3 cut(s) 580, 1007, 1139
AhdI GACNNNNNGTC 1 cut(s) 268
AjiI CACGTC 1 cut(s) 218
AjnI CCWGG 1 cut(s) 372
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AleI CACNNNNGTG 1 cut(s) 851
AluBI AGCT 7 cut(s) 345, 418, 586, 811, 851, 884, 1045
AluI AGCT 7 cut(s) 345, 418, 586, 811, 851, 884, 1045
Alw26I GTCTC 2 cut(s) 533, 667
AlwI GGATC 2 cut(s) 379, 392
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 1 cut(s) 615
ApeKI GCWGC 4 cut(s) 362, 365, 545, 720
ApoI RAATTY 1 cut(s) 1134
AsiSI GCGATCGC 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 575
Asp718I GGTACC 1 cut(s) 981
AspLEI GCGC 2 cut(s) 322, 1058
AspS9I GGNCC 3 cut(s) 270, 370, 804
AsuC2I CCSGG 2 cut(s) 390, 391
AsuHPI GGTGA 4 cut(s) 118, 124, 139, 917
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 3 cut(s) 270, 370, 804
AxyI CCTNAGG 1 cut(s) 226
BalI TGGCCA 1 cut(s) 617
BamHI GGATCC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 981
BanII GRGCYC 1 cut(s) 687
BbvI GCAGC 4 cut(s) 349, 352, 532, 707
BccI CCATC 2 cut(s) 88, 304
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 374
BciVI GTATCC 1 cut(s) 940
BclI TGATCA 1 cut(s) 867
BcnI CCSGG 2 cut(s) 390, 391
BcoDI GTCTC 2 cut(s) 533, 667
BfaI CTAG 3 cut(s) 705, 936, 969
BfmI CTRYAG 2 cut(s) 546, 924
BfuAI ACCTGC 1 cut(s) 893
BfuI GTATCC 1 cut(s) 940
BisI GCNGC 9 cut(s) 39, 172, 238, 241, 363, 366, 520, 546, 721
BlpI GCTNAGC 1 cut(s) 1052
BlsI GCNGC 9 cut(s) 40, 173, 239, 242, 364, 367, 521, 547, 722
Bme1390I CCNGG 3 cut(s) 374, 390, 391
Bme18I GGWCC 3 cut(s) 270, 370, 804
BmeRI GACNNNNNGTC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 389
BmgBI CACGTC 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 270, 370, 804
BmiI GGNNCC 5 cut(s) 271, 386, 805, 983, 1023
BmrFI CCNGG 3 cut(s) 374, 390, 391
BmsI GCATC 3 cut(s) 183, 438, 679
BpmI CTGGAG 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 501
Bpu1102I GCTNAGC 1 cut(s) 1052
BpuEI CTTGAG 1 cut(s) 932
BpuMI CCSGG 2 cut(s) 390, 391
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 4 cut(s) 351, 388, 389, 715
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 680, 991
Bse118I RCCGGY 2 cut(s) 188, 281
Bse1I ACTGG 3 cut(s) 163, 843, 1084
Bse21I CCTNAGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 4 cut(s) 351, 388, 389, 715
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 3 cut(s) 394, 680, 991
BseMII CTCAG 2 cut(s) 240, 991
BseNI ACTGG 3 cut(s) 163, 843, 1084
BseRI GAGGAG 5 cut(s) 34, 91, 101, 214, 246
BseXI GCAGC 4 cut(s) 349, 352, 532, 707
BseYI CCCAGC 1 cut(s) 458
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 617
BshNI GGYRCC 1 cut(s) 981
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 4 cut(s) 189, 282, 390, 439
BslFI GGGAC 1 cut(s) 817
BslI CCNNNNNNNGG 3 cut(s) 394, 680, 991
BsmAI GTCTC 2 cut(s) 533, 667
BsmFI GGGAC 1 cut(s) 817
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 1 cut(s) 617
Bso31I GGTCTC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 5 cut(s) 6, 384, 487, 741, 867
Bsp1720I GCTNAGC 1 cut(s) 1052
Bsp19I CCATGG 1 cut(s) 715
BspANI GGCC 1 cut(s) 617
BspCNI CTCAG 2 cut(s) 239, 990
BspLI GGNNCC 5 cut(s) 271, 386, 805, 983, 1023
BspMAI CTGCAG 1 cut(s) 550
BspMI ACCTGC 1 cut(s) 893
BspPI GGATC 2 cut(s) 379, 392
BspT107I GGYRCC 1 cut(s) 981
BspTNI GGTCTC 1 cut(s) 533
BsrFI RCCGGY 2 cut(s) 188, 281
BsrI ACTGG 3 cut(s) 163, 843, 1084
BssAI RCCGGY 2 cut(s) 188, 281
BssECI CCNNGG 4 cut(s) 351, 388, 389, 715
BssMI GATC 5 cut(s) 6, 384, 487, 741, 867
BssT1I CCWWGG 2 cut(s) 351, 715
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 3 cut(s) 77, 130, 661
Bst6I CTCTTC 5 cut(s) 34, 52, 185, 536, 672
BstC8I GCNNGC 4 cut(s) 190, 283, 347, 480
BstDEI CTNAG 6 cut(s) 226, 327, 501, 537, 977, 1052
BstDSI CCRYGG 1 cut(s) 715
BstF5I GGATG 1 cut(s) 174
BstHHI GCGC 2 cut(s) 322, 1058
BstKTI GATC 5 cut(s) 9, 387, 490, 744, 870
BstMAI GTCTC 2 cut(s) 533, 667
BstMBI GATC 5 cut(s) 6, 384, 487, 741, 867
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 6 cut(s) 168, 328, 374, 623, 881, 1062
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 3 cut(s) 372, 388, 389
BstSFI CTRYAG 2 cut(s) 546, 924
BstV1I GCAGC 4 cut(s) 349, 352, 532, 707
BstX2I RGATCY 1 cut(s) 384
BstXI CCANNNNNNTGG 1 cut(s) 358
BstYI RGATCY 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 226
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 1 cut(s) 617
BtgI CCRYGG 1 cut(s) 715
BtrI CACGTC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 836, 1077
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 4 cut(s) 190, 283, 347, 480
CfoI GCGC 2 cut(s) 322, 1058
Cfr10I RCCGGY 2 cut(s) 188, 281
Cfr13I GGNCC 3 cut(s) 270, 370, 804
Cfr9I CCCGGG 1 cut(s) 389
Csp6I GTAC 4 cut(s) 409, 553, 825, 982
CviAII CATG 5 cut(s) 511, 634, 716, 958, 1048
CviQI GTAC 4 cut(s) 409, 553, 825, 982
DdeI CTNAG 6 cut(s) 226, 327, 501, 537, 977, 1052
DpnI GATC 5 cut(s) 8, 386, 489, 743, 869
DpnII GATC 5 cut(s) 6, 384, 487, 741, 867
DriI GACNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 5 cut(s) 34, 52, 185, 536, 672
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 5 cut(s) 34, 52, 185, 536, 672
Eco130I CCWWGG 2 cut(s) 351, 715
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 270, 370, 804
Eco81I CCTNAGG 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 1134
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 351, 715
EcoT38I GRGCYC 1 cut(s) 687
ErhI CCWWGG 2 cut(s) 351, 715
FaeI CATG 5 cut(s) 514, 637, 719, 961, 1051
FaqI GGGAC 1 cut(s) 817
FatI CATG 5 cut(s) 510, 633, 715, 957, 1047
FauI CCCGC 1 cut(s) 324
FauNDI CATATG 1 cut(s) 946
FbaI TGATCA 1 cut(s) 867
FblI GTMKAC 2 cut(s) 954, 1113
Fnu4HI GCNGC 9 cut(s) 39, 172, 238, 241, 363, 366, 520, 546, 721
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 9 cut(s) 39, 172, 238, 241, 363, 366, 520, 546, 721
FspBI CTAG 3 cut(s) 705, 936, 969
GlaI GCGC 2 cut(s) 321, 1057
GluI GCNGC 9 cut(s) 39, 172, 238, 241, 363, 366, 520, 546, 721
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 1 cut(s) 617
HapII CCGG 4 cut(s) 189, 282, 390, 439
HhaI GCGC 2 cut(s) 322, 1058
Hin1II CATG 5 cut(s) 514, 637, 719, 961, 1051
Hin6I GCGC 2 cut(s) 320, 1056
HinP1I GCGC 2 cut(s) 320, 1056
HincII GTYRAC 1 cut(s) 1114
HindII GTYRAC 1 cut(s) 1114
HinfI GANTC 2 cut(s) 221, 379
HpaII CCGG 4 cut(s) 189, 282, 390, 439
HphI GGTGA 4 cut(s) 118, 124, 139, 917
Hpy166II GTNNAC 3 cut(s) 908, 955, 1114
Hpy188I TCNGA 2 cut(s) 274, 384
Hpy188III TCNNGA 3 cut(s) 228, 739, 753
Hpy8I GTNNAC 3 cut(s) 908, 955, 1114
Hpy99I CGWCG 4 cut(s) 197, 200, 203, 266
HpyAV CCTTC 2 cut(s) 22, 745
HpyCH4III ACNGT 3 cut(s) 77, 130, 661
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 5 cut(s) 451, 548, 602, 626, 692
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 328, 374, 623, 881, 1062
HpyF3I CTNAG 6 cut(s) 226, 327, 501, 537, 977, 1052
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 5 cut(s) 514, 637, 719, 961, 1051
HspAI GCGC 2 cut(s) 320, 1056
KpnI GGTACC 1 cut(s) 985
KroI GCCGGC 2 cut(s) 188, 281
KroNI GCCGGC 2 cut(s) 190, 283
Ksp22I TGATCA 1 cut(s) 867
Kzo9I GATC 5 cut(s) 6, 384, 487, 741, 867
LmnI GCTCC 2 cut(s) 28, 695
Lsp1109I GCAGC 4 cut(s) 349, 352, 532, 707
LweI GCATC 3 cut(s) 183, 438, 679
MaeI CTAG 3 cut(s) 705, 936, 969
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 3 cut(s) 130, 218, 853
MalI GATC 5 cut(s) 8, 386, 489, 743, 869
MboI GATC 5 cut(s) 6, 384, 487, 741, 867
MboII GAAGA 7 cut(s) 21, 39, 172, 487, 523, 638, 659
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 687
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 3 cut(s) 452, 1059, 1134
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 2 cut(s) 215, 388
MmeI TCCRAC 3 cut(s) 297, 318, 362
Mox20I TGGCCA 1 cut(s) 617
MreI CGCCGGCG 1 cut(s) 188
MroNI GCCGGC 2 cut(s) 188, 281
MroXI GAANNNNTTC 1 cut(s) 575
MscI TGGCCA 1 cut(s) 617
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 2 cut(s) 851, 1105
Msp20I TGGCCA 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 4 cut(s) 189, 282, 390, 439
MspR9I CCNGG 3 cut(s) 374, 390, 391
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 6 cut(s) 168, 328, 374, 623, 881, 1062
NaeI GCCGGC 2 cut(s) 190, 283
NciI CCSGG 2 cut(s) 390, 391
NcoI CCATGG 1 cut(s) 715
NdeI CATATG 1 cut(s) 946
NdeII GATC 5 cut(s) 6, 384, 487, 741, 867
NgoMIV GCCGGC 2 cut(s) 188, 281
NlaIII CATG 5 cut(s) 514, 637, 719, 961, 1051
NlaIV GGNNCC 5 cut(s) 271, 386, 805, 983, 1023
NmuCI GTSAC 3 cut(s) 130, 218, 853
OliI CACNNNNGTG 1 cut(s) 851
PaqCI CACCTGC 1 cut(s) 893
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 270
PctI GAATGC 1 cut(s) 521
PdiI GCCGGC 2 cut(s) 190, 283
PdmI GAANNNNTTC 1 cut(s) 575
PflMI CCANNNNNTGG 1 cut(s) 991
PkrI GCNGC 9 cut(s) 40, 173, 239, 242, 364, 367, 521, 547, 722
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 2 cut(s) 215, 387
PpsI GAGTC 2 cut(s) 215, 387
Psp6I CCWGG 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 5 cut(s) 271, 386, 805, 983, 1023
PspPI GGNCC 3 cut(s) 270, 370, 804
PsrI GAACNNNNNNTAC 2 cut(s) 1014, 1046
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 384
PvuI CGATCG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 851
RgaI GCGATCGC 1 cut(s) 9
RsaI GTAC 4 cut(s) 410, 554, 826, 983
RsaNI GTAC 4 cut(s) 409, 553, 825, 982
RseI CAYNNNNRTG 2 cut(s) 851, 1105
SalI GTCGAC 1 cut(s) 1112
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 9 cut(s) 39, 172, 238, 241, 363, 366, 520, 546, 721
Sau3AI GATC 5 cut(s) 6, 384, 487, 741, 867
Sau96I GGNCC 3 cut(s) 270, 370, 804
SchI GAGTC 2 cut(s) 215, 388
ScrFI CCNGG 3 cut(s) 374, 390, 391
SduI GDGCHC 1 cut(s) 687
SfaAI GCGATCGC 1 cut(s) 9
SfaNI GCATC 3 cut(s) 183, 438, 679
SfcI CTRYAG 2 cut(s) 546, 924
SgfI GCGATCGC 1 cut(s) 9
SgrAI CRCCGGYG 1 cut(s) 188
SinI GGWCC 3 cut(s) 270, 370, 804
SmaI CCCGGG 1 cut(s) 391
SmiMI CAYNNNNRTG 2 cut(s) 851, 1105
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 3 cut(s) 452, 1059, 1134
SspMI CTAG 3 cut(s) 705, 936, 969
StyD4I CCNGG 3 cut(s) 372, 388, 389
StyI CCWWGG 2 cut(s) 351, 715
TaaI ACNGT 3 cut(s) 77, 130, 661
TaiI ACGT 1 cut(s) 220
TaqI TCGA 3 cut(s) 670, 687, 1113
TasI AATT 3 cut(s) 452, 1059, 1134
TauI GCSGC 5 cut(s) 41, 174, 240, 243, 522
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 843, 1084
TseFI GTSAC 3 cut(s) 130, 218, 853
TseI GCWGC 4 cut(s) 362, 365, 545, 720
Tsp45I GTSAC 3 cut(s) 130, 218, 853
TspDTI ATGAA 5 cut(s) 499, 622, 822, 1089, 1117
TspGWI ACGGA 3 cut(s) 216, 228, 279
TspMI CCCGGG 1 cut(s) 389
TspRI CASTG 2 cut(s) 843, 1084
Van91I CCANNNNNTGG 1 cut(s) 991
VpaK11BI GGWCC 3 cut(s) 270, 370, 804
XapI RAATTY 1 cut(s) 1134
XcmI CCANNNNNNNNNTGG 1 cut(s) 992
XmaI CCCGGG 1 cut(s) 389
XmiI GTMKAC 2 cut(s) 954, 1113
XmnI GAANNNNTTC 1 cut(s) 575
XspI CTAG 3 cut(s) 705, 936, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.