Rh5CG379300

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002218
Physical Location & Seq
Reverse (-)
49471762 .. 49476284
4523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG379300.1

Sequence Viewer

Length: 1137 bp
ATGGCAATGGCCTTCTGCTTCACTCCCTCCTCTTCCTCTTCCTCCTCCTCCTCCGCCTCCAAGTTCAATCCGCACCGTCCGATTCCGTCTCTCTCCGCCTCTCCCGTCGTGCACCTCCGCCTCAGCGTGTCCCCGCCCTCTCTGGCGCACCGCGGCCGCCAGTTCCGGCGGGTGCTGTTCGCCGTCGGGGGCGGAGACGGCGGATTTGGCGGCGGAGGATACTCCGGAGGCGGTAGAGGCGGGGATCACGGCGGCGAGGACAATGCCGGCGGGAAAAACAAGGTGGAGGCCCTGATGGTGCTGAAGGAGTCCGGCCGGGGGTTGGAGAGCCTGCCGAAGGACTTGGCGGCGGCGATCCAGGACGGGCGGATCCCCGGCGCGGTTGTGGATAAGTATTTTGAGCTGGAGAAGAACGGCTTCTTTTCGTGGCTGTTGCAGTTTGCTGGGTTTAGGGAGCGTTTGTTGGCTGATGATCTTTTCTTGTTTAAGGTCTTCATGGAGTGTGGTGTTGGTCTTTTCACCAAGACTGCTGCAGAGTACCAGAAACGCCAAGAAAACTTTTTCAATGAGCTCGAAGTTGTGTTTGCAGATGTGGTAATGGCCATAATTGCAGATTTCATGCTTGTATATCTTCCTGCCCCAACTGTTTCTCTTCGACCACCAGTTGCACTCAGCGCAGGGGCAATCACCAAGTTTTTCCATGGTTGCCCTGATAATGCATTCCAGATCGCTATCTCAGGAACATCATACTCCTTATTTCAGAGGATTGGTGCAGTAGTGAGAAATGGGAGCAAGCTCTTTGTTGTTGGTACTGCTTCATCACTGGTTGGCACAAGTGTTACAAATGCCTTGATCAATGCAAAGAAGGCTGTTGGTAGCTCCGCAGAGGCTGAAGCTGAGAATGTACCTATAGTATCCACTAGCCTTGCATACGGTGTCTATATGGCAGTTTCTAGCAATCTCAGGTACCAAGTATTGGCTGGTGTTATTGAACAAAGGATGTTGGAGCCACTACTACATCAACACAAGCTAATGCTAAGCGCAGTATGCTTTGCCGTTCGAACCGGCAACACATTCTTGGGTTCATTATTGTGGGTGGACTATGCTCGTTTAATCGGGATTCAGAAGGCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RETICULATA-like

Protein Analysis

378

Amino Acids

40.34

Weight (kDa)

9.1

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 152 - 329 7.3e-65 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 966
AccB1I GGYRCC 1 cut(s) 966
AccB7I CCANNNNNTGG 1 cut(s) 976
AccII CGCG 2 cut(s) 153, 380
AccIII TCCGGA 1 cut(s) 224
AclWI GGATC 4 cut(s) 252, 349, 364, 377
AcoI YGGCCR 3 cut(s) 154, 313, 600
AcuI CTGAAG 2 cut(s) 323, 912
AfaI GTAC 4 cut(s) 539, 811, 906, 968
AfiI CCNNNNNNNGG 5 cut(s) 318, 322, 337, 379, 976
AgsI TTSAA 3 cut(s) 67, 565, 992
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 6 cut(s) 403, 571, 796, 879, 896, 1030
AluI AGCT 6 cut(s) 403, 571, 796, 879, 896, 1030
Alw21I GWGCWC 2 cut(s) 114, 573
Alw26I GTCTC 2 cut(s) 93, 189
Alw44I GTGCAC 1 cut(s) 110
AlwI GGATC 4 cut(s) 252, 349, 364, 377
AlwNI CAGNNNCTG 1 cut(s) 890
Aor13HI TCCGGA 1 cut(s) 224
AoxI GGCC 6 cut(s) 9, 154, 288, 313, 600, 1128
ApaLI GTGCAC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 530
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 1 cut(s) 416
Asp718I GGTACC 1 cut(s) 966
AspLEI GCGC 4 cut(s) 148, 380, 677, 1043
AspS9I GGNCC 2 cut(s) 289, 1129
AsuC2I CCSGG 2 cut(s) 317, 375
AsuHPI GGTGA 2 cut(s) 511, 679
AsuII TTCGAA 1 cut(s) 1060
BaeGI GKGCMC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 602
BamHI GGATCC 1 cut(s) 369
BanI GGYRCC 1 cut(s) 966
BanII GRGCYC 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 484
Bbv12I GWGCWC 2 cut(s) 114, 573
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 517
BccI CCATC 1 cut(s) 289
BceAI ACGGC 5 cut(s) 167, 214, 265, 430, 1040
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 359
BciVI GTATCC 2 cut(s) 212, 925
BclI TGATCA 1 cut(s) 852
BcnI CCSGG 2 cut(s) 317, 375
BcoDI GTCTC 2 cut(s) 93, 189
BfaI CTAG 2 cut(s) 921, 954
BfmI CTRYAG 2 cut(s) 531, 909
BfuI GTATCC 2 cut(s) 212, 925
BisI GCNGC 7 cut(s) 154, 157, 211, 253, 348, 351, 531
BlpI GCTNAGC 1 cut(s) 1037
BlsI GCNGC 7 cut(s) 155, 158, 212, 254, 349, 352, 532
Bme1390I CCNGG 3 cut(s) 317, 359, 375
BmgT120I GGNCC 2 cut(s) 289, 1129
BmiI GGNNCC 3 cut(s) 371, 968, 1008
BmrFI CCNGG 3 cut(s) 317, 359, 375
BpiI GAAGAC 1 cut(s) 484
BpmI CTGGAG 1 cut(s) 425
Bpu10I CCTNAGC 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 1037
Bpu14I TTCGAA 1 cut(s) 1060
BpuMI CCSGG 2 cut(s) 317, 375
BsaBI GATNNNNATC 1 cut(s) 731
BsaJI CCNNGG 4 cut(s) 151, 316, 373, 700
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 5 cut(s) 318, 322, 337, 379, 976
Bse118I RCCGGY 2 cut(s) 266, 1064
Bse1I ACTGG 3 cut(s) 160, 662, 828
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 731
BseAI TCCGGA 1 cut(s) 224
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 4 cut(s) 151, 316, 373, 700
BseGI GGATG 1 cut(s) 1005
BseJI GATNNNNATC 1 cut(s) 731
BseLI CCNNNNNNNGG 5 cut(s) 318, 322, 337, 379, 976
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 5 cut(s) 136, 685, 750, 888, 976
BseNI ACTGG 3 cut(s) 160, 662, 828
BseRI GAGGAG 4 cut(s) 19, 34, 37, 40
BseSI GKGCMC 1 cut(s) 114
BseX3I CGGCCG 2 cut(s) 154, 313
BseXI GCAGC 1 cut(s) 517
BseYI CCCAGC 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 2 cut(s) 153, 380
Bsh1285I CGRYCG 2 cut(s) 157, 316
BshFI GGCC 6 cut(s) 11, 156, 290, 315, 602, 1130
BshNI GGYRCC 1 cut(s) 966
BsiEI CGRYCG 2 cut(s) 157, 316
BsiHKAI GWGCWC 2 cut(s) 114, 573
BsiSI CCGG 7 cut(s) 166, 225, 267, 312, 316, 375, 1065
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 5 cut(s) 318, 322, 337, 379, 976
BsmAI GTCTC 2 cut(s) 93, 189
BsmBI CGTCTC 2 cut(s) 93, 189
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 719
BsnI GGCC 6 cut(s) 11, 156, 290, 315, 602, 1130
Bsp119I TTCGAA 1 cut(s) 1060
Bsp1286I GDGCHC 2 cut(s) 114, 573
Bsp13I TCCGGA 1 cut(s) 224
Bsp143I GATC 6 cut(s) 244, 354, 369, 472, 726, 852
Bsp1720I GCTNAGC 1 cut(s) 1037
Bsp19I CCATGG 1 cut(s) 700
BspANI GGCC 6 cut(s) 11, 156, 290, 315, 602, 1130
BspCNI CTCAG 5 cut(s) 135, 684, 749, 889, 975
BspEI TCCGGA 1 cut(s) 224
BspFNI CGCG 2 cut(s) 153, 380
BspLI GGNNCC 3 cut(s) 371, 968, 1008
BspMAI CTGCAG 1 cut(s) 535
BspPI GGATC 4 cut(s) 252, 349, 364, 377
BspT104I TTCGAA 1 cut(s) 1060
BspT107I GGYRCC 1 cut(s) 966
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 266, 1064
BsrI ACTGG 3 cut(s) 160, 662, 828
BssAI RCCGGY 2 cut(s) 266, 1064
BssECI CCNNGG 4 cut(s) 151, 316, 373, 700
BssMI GATC 6 cut(s) 244, 354, 369, 472, 726, 852
BssT1I CCWWGG 1 cut(s) 700
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 3 cut(s) 77, 646, 935
Bst6I CTCTTC 3 cut(s) 37, 43, 657
BstBI TTCGAA 1 cut(s) 1060
BstC8I GCNNGC 3 cut(s) 268, 332, 794
BstDEI CTNAG 6 cut(s) 122, 671, 736, 897, 962, 1037
BstDSI CCRYGG 2 cut(s) 151, 700
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 1005
BstFNI CGCG 2 cut(s) 153, 380
BstHHI GCGC 4 cut(s) 148, 380, 677, 1043
BstKTI GATC 6 cut(s) 247, 357, 372, 475, 729, 855
BstMAI GTCTC 2 cut(s) 93, 189
BstMBI GATC 6 cut(s) 244, 354, 369, 472, 726, 852
BstMCI CGRYCG 2 cut(s) 157, 316
BstMWI GCNNNNNNNGC 7 cut(s) 198, 207, 237, 608, 674, 866, 1047
BstNI CCWGG 1 cut(s) 359
BstSCI CCNGG 3 cut(s) 315, 357, 373
BstSFI CTRYAG 2 cut(s) 531, 909
BstSLI GKGCMC 1 cut(s) 114
BstUI CGCG 2 cut(s) 153, 380
BstV1I GCAGC 1 cut(s) 517
BstV2I GAAGAC 1 cut(s) 484
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BstZI CGGCCG 2 cut(s) 154, 313
BsuI GTATCC 2 cut(s) 212, 925
BsuRI GGCC 6 cut(s) 11, 156, 290, 315, 602, 1130
BtgI CCRYGG 2 cut(s) 151, 700
BtsCI GGATG 1 cut(s) 1005
BtsIMutI CAGTG 1 cut(s) 821
Cac8I GCNNGC 3 cut(s) 268, 332, 794
CaiI CAGNNNCTG 1 cut(s) 890
CciNI GCGGCCGC 1 cut(s) 154
CfoI GCGC 4 cut(s) 148, 380, 677, 1043
Cfr10I RCCGGY 2 cut(s) 266, 1064
Cfr13I GGNCC 2 cut(s) 289, 1129
Cfr42I CCGCGG 1 cut(s) 154
Csp6I GTAC 4 cut(s) 538, 810, 905, 967
CspCI CAANNNNNGTGG 2 cut(s) 907, 942
CviAII CATG 3 cut(s) 496, 619, 701
CviQI GTAC 4 cut(s) 538, 810, 905, 967
DdeI CTNAG 6 cut(s) 122, 671, 736, 897, 962, 1037
DpnI GATC 6 cut(s) 246, 356, 371, 474, 728, 854
DpnII GATC 6 cut(s) 244, 354, 369, 472, 726, 852
EaeI YGGCCR 3 cut(s) 154, 313, 600
EagI CGGCCG 2 cut(s) 154, 313
Eam1104I CTCTTC 3 cut(s) 37, 43, 657
EarI CTCTTC 3 cut(s) 37, 43, 657
EciI GGCGGA 7 cut(s) 43, 85, 107, 207, 216, 228, 382
Ecl136II GAGCTC 1 cut(s) 571
EclXI CGGCCG 2 cut(s) 154, 313
Eco130I CCWWGG 1 cut(s) 700
Eco24I GRGCYC 1 cut(s) 573
Eco52I CGGCCG 2 cut(s) 154, 313
Eco53kI GAGCTC 1 cut(s) 571
Eco57I CTGAAG 2 cut(s) 323, 912
EcoICRI GAGCTC 1 cut(s) 571
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 700
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 700
Esp3I CGTCTC 2 cut(s) 93, 189
FaeI CATG 3 cut(s) 499, 622, 704
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FaqI GGGAC 1 cut(s) 115
FatI CATG 3 cut(s) 495, 618, 700
FauI CCCGC 4 cut(s) 141, 162, 233, 263
FbaI TGATCA 1 cut(s) 852
Fnu4HI GCNGC 7 cut(s) 154, 157, 211, 253, 348, 351, 531
FokI GGATG 1 cut(s) 1012
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 7 cut(s) 154, 157, 211, 253, 348, 351, 531
FspBI CTAG 2 cut(s) 921, 954
GlaI GCGC 4 cut(s) 147, 379, 676, 1042
GluI GCNGC 7 cut(s) 154, 157, 211, 253, 348, 351, 531
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 6 cut(s) 11, 156, 290, 315, 602, 1130
HapII CCGG 7 cut(s) 166, 225, 267, 312, 316, 375, 1065
HhaI GCGC 4 cut(s) 148, 380, 677, 1043
Hin1II CATG 3 cut(s) 499, 622, 704
Hin6I GCGC 4 cut(s) 146, 378, 675, 1041
HinP1I GCGC 4 cut(s) 146, 378, 675, 1041
HinfI GANTC 3 cut(s) 82, 308, 1120
HpaII CCGG 7 cut(s) 166, 225, 267, 312, 316, 375, 1065
HphI GGTGA 2 cut(s) 511, 679
Hpy166II GTNNAC 2 cut(s) 112, 1099
Hpy188I TCNGA 3 cut(s) 81, 762, 1125
Hpy188III TCNNGA 4 cut(s) 225, 724, 738, 1117
Hpy8I GTNNAC 2 cut(s) 112, 1099
Hpy99I CGWCG 2 cut(s) 110, 188
HpyAV CCTTC 5 cut(s) 22, 298, 331, 859, 1120
HpyCH4III ACNGT 3 cut(s) 77, 646, 935
HpyF10VI GCNNNNNNNGC 7 cut(s) 198, 207, 237, 608, 674, 866, 1047
HpyF3I CTNAG 6 cut(s) 122, 671, 736, 897, 962, 1037
Hsp92II CATG 3 cut(s) 499, 622, 704
HspAI GCGC 4 cut(s) 146, 378, 675, 1041
Kpn2I TCCGGA 1 cut(s) 224
KpnI GGTACC 1 cut(s) 970
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 852
KspI CCGCGG 1 cut(s) 154
Kzo9I GATC 6 cut(s) 244, 354, 369, 472, 726, 852
LmnI GCTCC 4 cut(s) 454, 789, 884, 1006
Lsp1109I GCAGC 1 cut(s) 517
MaeI CTAG 2 cut(s) 921, 954
MaeIII GTNAC 1 cut(s) 838
MalI GATC 6 cut(s) 246, 356, 371, 474, 728, 854
MboI GATC 6 cut(s) 244, 354, 369, 472, 726, 852
MboII GAAGA 6 cut(s) 24, 30, 421, 484, 623, 644
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 2 cut(s) 114, 573
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 1 cut(s) 606
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 303, 984
Mox20I TGGCCA 1 cut(s) 602
Mph1103I ATGCAT 1 cut(s) 721
MroI TCCGGA 1 cut(s) 224
MroNI GCCGGC 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 416
MscI TGGCCA 1 cut(s) 602
MseI TTAA 2 cut(s) 486, 1112
MslI CAYNNNNRTG 1 cut(s) 1090
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 153
MspI CCGG 7 cut(s) 166, 225, 267, 312, 316, 375, 1065
MspR9I CCNGG 3 cut(s) 317, 359, 375
Mva1269I GAATGC 1 cut(s) 719
MvaI CCWGG 1 cut(s) 359
MvnI CGCG 2 cut(s) 153, 380
MwoI GCNNNNNNNGC 7 cut(s) 198, 207, 237, 608, 674, 866, 1047
NaeI GCCGGC 1 cut(s) 268
NciI CCSGG 2 cut(s) 317, 375
NcoI CCATGG 1 cut(s) 700
NdeII GATC 6 cut(s) 244, 354, 369, 472, 726, 852
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 3 cut(s) 499, 622, 704
NlaIV GGNNCC 3 cut(s) 371, 968, 1008
NotI GCGGCCGC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 721
NspV TTCGAA 1 cut(s) 1060
PctI GAATGC 1 cut(s) 719
PdiI GCCGGC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 2 cut(s) 82, 1120
PflMI CCANNNNNTGG 1 cut(s) 976
PfoI TCCNGGA 1 cut(s) 357
PkrI GCNGC 7 cut(s) 155, 158, 212, 254, 349, 352, 532
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 3 cut(s) 371, 968, 1008
PspPI GGNCC 2 cut(s) 289, 1129
PstI CTGCAG 1 cut(s) 535
PstNI CAGNNNCTG 1 cut(s) 890
PsuI RGATCY 1 cut(s) 369
RsaI GTAC 4 cut(s) 539, 811, 906, 968
RsaNI GTAC 4 cut(s) 538, 810, 905, 967
RseI CAYNNNNRTG 1 cut(s) 1090
SacI GAGCTC 1 cut(s) 573
SacII CCGCGG 1 cut(s) 154
SaqAI TTAA 2 cut(s) 486, 1112
SatI GCNGC 7 cut(s) 154, 157, 211, 253, 348, 351, 531
Sau3AI GATC 6 cut(s) 244, 354, 369, 472, 726, 852
Sau96I GGNCC 2 cut(s) 289, 1129
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 317, 359, 375
SduI GDGCHC 2 cut(s) 114, 573
SfcI CTRYAG 2 cut(s) 531, 909
Sfr303I CCGCGG 1 cut(s) 154
SfuI TTCGAA 1 cut(s) 1060
SgrBI CCGCGG 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 1090
Sse9I AATT 1 cut(s) 606
SspMI CTAG 2 cut(s) 921, 954
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 3 cut(s) 315, 357, 373
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 3 cut(s) 77, 646, 935
TaqI TCGA 3 cut(s) 573, 655, 1060
TasI AATT 1 cut(s) 606
TauI GCSGC 6 cut(s) 156, 159, 213, 255, 350, 353
TfiI GAWTC 2 cut(s) 82, 1120
Tru1I TTAA 2 cut(s) 486, 1112
Tru9I TTAA 2 cut(s) 486, 1112
TscAI CASTG 1 cut(s) 828
TseI GCWGC 1 cut(s) 530
TspDTI ATGAA 4 cut(s) 484, 607, 807, 1074
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 1 cut(s) 828
Van91I CCANNNNNTGG 1 cut(s) 976
VneI GTGCAC 1 cut(s) 110
XagI CCTNNNNNAGG 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 977
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 921, 954
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.